BAC Information

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BAC

Clone NameB6Ng01-158D05
Chromosome13 (Build37)
Map Location 40,732,714 - 40,883,901
singlet/doubletdoublet
Overlap geneLOC100039048, Tcfap2a, EG621629
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneEG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158D05.bB6Ng01-158D05.g
ACCDH952218DH952219
length1,058858
definitionDH952218|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D05, 5' end.DH952219|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,732,714 - 40,733,790)(40,883,339 - 40,883,901)
sequence
gaattccaatcacatgagaactagatctgactcaaaacagattcgcaata
tgtcttgaacctgttggccgaatgtcagaagtgctgctgatctagctttg
tgtttgtctctgaagtgactactgtcgctggggaactgtttcctgctaat
gacatcacggtgctaatattttaccttctgactttgacaggcaaatgagg
ccttgactagattaccttaagtaaataaatgtgagtaaagagattatctg
gcattacgctctattgtagtccttaagacacaggcccaatatttttaaag
gattagcaatctcactgtgtaccttaaagaaaaaccctttgccatatagc
gcccttggccttgagcaacaggcatgccaaaccctctctccccaccccct
tttgtaagaggccacccaccacctgtgtagcacactaagatctgacttaa
ggaaggaaattacatcacatcacagaggggaaaaatttttttattttaaa
cttgagctaagatagtttaaaaatccaagatgtgtttttgttttgttttg
ttttgttccaactatctggcaatctgaaagacgttatttagatgtgcagt
ctttaaaactgagtttaatgggtctccagagagccgggaattatgcattt
tgtatggtctctgtattggcgctcgacatacaaagagtagctgaggagaa
gcaagcattttctctgattgctgatttcagtaattcgtgttattgggtga
tcagatagccttacttaagggattagccactgtcttacagagtcattcca
gtgctccaagaattcctttagagattaaaagcaaatccttggaataagga
tccaatttttcagtccaaagtgacttcttgggacaccagttttttttttc
taaagccagaactgaagtaatcccttagaaagggatatttgatactcata
gcacaaattatgtgagatgctcggggaatccaaatgcattctataattta
ttctaagaatacatgataaggtagtatccctgtaatgtaacttgcgaggg
agggtggg
gaattctacatcttgatttgaaggcaaccaggagagactgtcttccagac
agctaggaggagggtctcaaagcccactcccaaagtgacacacttcctcc
aacaaggccacacctcctaatagtgctactccctgggccaagcatattca
aaccaccacagagcataagaaagcaagggcttgctttagttcacagtttg
aggggatgtggcccatcgcagttggtacatgttgtggcaggagagtgaga
caattggccacactgtactcaggaagaaggaaatggataggaagcatggt
gtggctagcttaataagactgtcttcccagtgaccgacttcctctagtta
ggttccacctcttttcaaagcagccacctgctggggaccatgcattcaaa
cacttgagccttcaggagacatttcacattcaaaccacagtggggaaaca
cagtgctttaagacagttgctgggtattgctcaacacaccagcttcctta
tctaatattagcagggaaaggaccaagtcctgcctgcccctgcatctctg
tttagtccagagtctgtctgtgagaacctctttccactcttgtatatggg
actagtaggataaagagatacaccttcctggcccctgtctttttcaagct
tattccttatgaatttttttccattcttaacaatttccataaatattatt
catccctcttccataccattcactgaggcagggtctctcaaccaaaccca
aagttcttcagtgtggctaaccattttagcctgggaggccctggagagag
aagaaggaaagaaggaaaaagagagaaggagttgttggttttttttgggg
gggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40732714_40733790
seq2: B6Ng01-158D05.b_48_1105

seq1  GAATTCCAATCACATGAGAACTAGATCTGACTCAAAACAGATTCGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCACATGAGAACTAGATCTGACTCAAAACAGATTCGCAATA  50

seq1  TGTCTTGAACCTGTTGGCCGAATGTCAGAAGTGCTGCTGATCTAGCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAACCTGTTGGCCGAATGTCAGAAGTGCTGCTGATCTAGCTTTG  100

seq1  TGTTTGTCTCTGAAGTGACTACTGTCGCTGGGGAACTGTTTCCTGCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTCTGAAGTGACTACTGTCGCTGGGGAACTGTTTCCTGCTAAT  150

seq1  GACATCACGGTGCTAATATTTTACCTTCTGACTTTGACAGGCAAATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACGGTGCTAATATTTTACCTTCTGACTTTGACAGGCAAATGAGG  200

seq1  CCTTGACTAGATTACCTTAAGTAAATAAATGTGAGTAAAGAGATTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTAGATTACCTTAAGTAAATAAATGTGAGTAAAGAGATTATCTG  250

seq1  GCATTACGCTCTATTGTAGTCCTTAAGACACAGGCCCAATATTTTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACGCTCTATTGTAGTCCTTAAGACACAGGCCCAATATTTTTAAAG  300

seq1  GATTAGCAATCTCACTGTGTACCTTAAAGAAAAACCCTTTGCCATATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCAATCTCACTGTGTACCTTAAAGAAAAACCCTTTGCCATATAGC  350

seq1  GCCCTTGGCCTTGAGCAACAGGCATGCCAAACCCTCTCTCCCCACCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGCCTTGAGCAACAGGCATGCCAAACCCTCTCTCCCCACCCCCT  400

seq1  TTTGTAAGAGGCCACCCACCACCTGTGTAGCACACTAAGATCTGACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAGGCCACCCACCACCTGTGTAGCACACTAAGATCTGACTTAA  450

seq1  GGAAGGAAATTACATCACATCACAGAGGGGAAAAATTTTTTTATTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAATTACATCACATCACAGAGGGGAAAAATTTTTTTATTTTAAA  500

seq1  CTTGAGCTAAGATAGTTTAAAAATCCAAGATGTGTTTTTGTTTTGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTAAGATAGTTTAAAAATCCAAGATGTGTTTTTGTTTTGTTTTG  550

seq1  TTTTGTTCCAACTATCTGGCAATCTGAAAGACGTTATTTAGATGTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCAACTATCTGGCAATCTGAAAGACGTTATTTAGATGTGCAGT  600

seq1  CTTTAAAACTGAGTTTAATGGGTCTCCAGAGAGCCGGGAATTATGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACTGAGTTTAATGGGTCTCCAGAGAGCCGGGAATTATGCATTT  650

seq1  TGTATGGTCTCTGTATTGGCGCTCGACATACAAAGAGTAGCTGAGGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCTCTGTATTGGCGCTCGACATACAAAGAGTAGCTGAGGAGAA  700

seq1  GCAAGCATTTTCTCTGATTGCTGATTTCAGTAATTCGTGTTATTGGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTTTCTCTGATTGCTGATTTCAGTAATTCGTGTTATTGGGTGA  750

seq1  TCAGATAGCCTTACTTAAGGGATTAGCCACTGTCTTACAGAGTCATTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGCCTTACTTAAGGGATTAGCCACTGTCTTACAGAGTCATTCCA  800

seq1  GTGCTCCAAGAATTCCTTTAGAGATTAAAAGCAAATCCTTGGAATAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAAGAATTCCTTTAGAGATTAAAAGCAAATCCTTGGAATAAGGA  850

seq1  TCCAATTTTTCAGTCCAAAGTGACTTCTTGGGACACCAGTTTTTTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TCCAATTTTTCAGTCCAAAGTGACTTCTTGGGACACCAGTTTTTTTTTTC  900

seq1  TAAAGCCAGAACTGAAGTAATCCCTTAAGAAAGGGGATATTTGATAACTC  950
      |||||||||||||||||||||||||| ||||| |||||||||||| ||||
seq2  TAAAGCCAGAACTGAAGTAATCCCTT-AGAAA-GGGATATTTGAT-ACTC  947

seq1  AATAGCACAAATTAATTGTGAGAATGCTCGGGGAATCCAAATGCATTCTA  1000
       |||||||||||||  |||||| |||||||||||||||||||||||||||
seq2  -ATAGCACAAATTA--TGTGAG-ATGCTCGGGGAATCCAAATGCATTCTA  993

seq1  ATTAATTTAATTCTTAAGAAATACATTGAATAAGGTAGTTAATCCCTGTA  1050
        |||||| |||| |||| |||||||   ||||||||||  |||||||| 
seq2  --TAATTT-ATTC-TAAG-AATACAT--GATAAGGTAGT--ATCCCTGT-  1033

seq1  AATGTAACCTTGCGGAGGGAGGGTGGG  1077
      ||||||| ||||| |||||||||||||
seq2  AATGTAA-CTTGC-GAGGGAGGGTGGG  1058

seq1: chr13_40883339_40883901
seq2: B6Ng01-158D05.g_363_925 (reverse)

seq1  ACA-CCCCCCCCAAAAAAAACCAACAACTCCTTCTCTCTTTTTCCTTCTT  49
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCCCCCAAAAAAAACCAACAACTCCTTCTCTCTTTTTCCTTCTT  50

seq1  TCCCTTCTTCTCTCTCCAGGGCCTCCCAGGCTAAAATGGTTAGCCACACT  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCTTCTTCTCTCTCCAGGGCCTCCCAGGCTAAAATGGTTAGCCACACT  99

seq1  GAAGAACTTTGGGTTTGGTTGAGAGACCCTGCCTCAGTGAATGGTATGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTGGGTTTGGTTGAGAGACCCTGCCTCAGTGAATGGTATGGA  149

seq1  AGAGGGATGAATAATATTTATGGAAATTGTTAAGAATGGAAAAAAATTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATGAATAATATTTATGGAAATTGTTAAGAATGGAAAAAAATTCA  199

seq1  TAAGGAATAAGCTTGAAAAAGACAGGGGCCAGGAAGGTGTATCTCTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATAAGCTTGAAAAAGACAGGGGCCAGGAAGGTGTATCTCTTTAT  249

seq1  CCTACTAGTCCCATATACAAGAGTGGAAAGAGGTTCTCACAGACAGACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAGTCCCATATACAAGAGTGGAAAGAGGTTCTCACAGACAGACTC  299

seq1  TGGACTAAACAGAGATGCAGGGGCAGGCAGGACTTGGTCCTTTCCCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAACAGAGATGCAGGGGCAGGCAGGACTTGGTCCTTTCCCTGCT  349

seq1  AATATTAGATAAGGAAGCTGGTGTGTTGAGCAATACCCAGCAACTGTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGATAAGGAAGCTGGTGTGTTGAGCAATACCCAGCAACTGTCTT  399

seq1  AAAGCACTGTGTTTCCCCACTGTGGTTTGAATGTGAAATGTCTCCTGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGTGTTTCCCCACTGTGGTTTGAATGTGAAATGTCTCCTGAAG  449

seq1  GCTCAAGTGTTTGAATGCATGGTCCCCAGCAGGTGGCTGCTTTGAAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTGTTTGAATGCATGGTCCCCAGCAGGTGGCTGCTTTGAAAAGA  499

seq1  GGTGGAACCTAACTAGAGGAAGTCGGTCACTGGGAAGACAGTCTTATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACCTAACTAGAGGAAGTCGGTCACTGGGAAGACAGTCTTATTAA  549

seq1  GCTAGCCACACCAT  563
      ||||||||||||||
seq2  GCTAGCCACACCAT  563