BAC Information

Click to search

BAC

Clone NameB6Ng01-158G08
Chromosome13 (Build37)
Map Location 61,262,811 - 61,263,943
singlet/doubletsinglet
Overlap geneCtsr
Upstream geneGas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq
Downstream geneCts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158G08.bB6Ng01-158G08.g
ACCDH952353DH952354
length1,1731,118
definitionDH952353|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G08, 5' end.DH952354|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaactg
ttcaacatccttaattatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacattcctcccttgttggtg
ggattgcaagcttgtacaacgactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgagc
atatatccagaagatgttctaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcctttcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcacaagatatatactcactgataagtgagtattagcccggaaac
ttagtatacccgagatataagagacaatttgtaaaacacatgaaactgaa
gaagaacgaagaccaaagtgtggacactttgccccttcttataattggaa
acaatcacccatggaaggagttacatagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatgtccagggatccatcccataatt
agccttcaaatgattacaccattgcatacactagcaagtgttttctgaaa
ggaccctgagatagctgtctcttctgagactaggttggtgcctagcaaac
acataagtgaatgttcacagtcagctattagatggagcacagggccctca
atggaggagccagagaatgtatctaggagctaagagatctgcaaccctga
agtgcaacaacatatgaactaaccagtacccggagctcttgactctagct
gcatatgttcgaaagatggcctatagacatactggaagagcaggccattg
tactactaaattaatatcttcggtacgggaatgccaggggacaaagatgg
tgatagggtgtgatgggtatgtt
gaattcaggaaaatgatgattgaaatttcagtttggactcacagagaggg
gaaaagtatcatgaaacgggaagctggcagtattctccccaaatttgtcg
attggcgaaagaaaggatatgtgactcctgtacggagacaggtatgaagg
tgttacattcccatcctcttaaactgtgttgaaaaggtaaaagagttggt
gttttgtgtgcacattaagtgtggagtaatatgccattcattttttaata
atattttttcttcttagaatacttcatatattttaaatgtatttaatcct
agaaatatattacatatactccctattaatgtccacctatctttctaagg
aacttgtgtccccttttattgcccttaataactcacaaaacaagtagtcc
ctttcaaatgttcatgtatatggccatgactagagcatgagcaaactgcc
agtagtaatgtcttttaggagtctgatatctccaaggaatcaatcaattg
acattaaataattttcaagcagtaataagttttctaacttgttgccaggt
tgttatttatctatgacaaccctttcttccctattcagggagattgtgat
gcttgttgggcatttgctgtgactggtgccatagaagcacaggcaatctg
gcaaacgggcaaactcacccctctgagtgtgcagaacctggtggactgtt
ctaaacctcaaggcaacaatggttgtcttggtggtgatacatacaatgcc
ttccagtatgttttgcacaatggtggtctggagtctgaggcaacatatcc
atatgaagggaaagtaagtggacatcctatgctgtcacttcaactcagct
tggaatgtaagacaattgtagagataatccaccatcttcagggtacaatt
tagtagaattactctgtatatcattaaatctgtcattagttttcaatatc
tgtatagctttctgataaattattttggtgcagctctgttttcttctatg
agatatgcaaactactatacatataattaagattttcaccattaaaatct
caagattgtaggacaattcttgtcataaagattggcaacctattttcagt
ttcaattcttgatagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61262811_61263943
seq2: B6Ng01-158G08.g_67_1184 (reverse)

seq1  ATGCTATCAAGAGATTTAGAACTGAAAATTAGTTTGCATATCTTTAATGA  50
      |||||||||||| ||| | ||||||||| ||| ||||  |||||| ||||
seq2  ATGCTATCAAGA-ATTGA-AACTGAAAA-TAGGTTGCCAATCTTT-ATGA  46

seq1  CAATGAATTTGTCTTACAATCTTTGAGAATTTTTAATGGTTGAAAAATCT  100
      ||| ||| ||||| ||||||| ||||||  ||||||||||   |||||||
seq2  CAA-GAA-TTGTCCTACAATC-TTGAGA--TTTTAATGGT--GAAAATCT  89

seq1  ATATTATATGTATAGTAGTTTGCATATTCTTCATAGAAGAAAACAGAGCT  150
        |||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TAATTATATGTATAGTAGTTTGCATAT--CTCATAGAAGAAAACAGAGCT  137

seq1  GCACCAAAATAATTTTATCAGAAAGCTATACAGATATTGAAAAACTAATG  200
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  GCACCAAAATAA-TTTATCAGAAAGCTATACAGATATTG-AAAACTAATG  185

seq1  ACAGATTTAATGATATACAGAGTAATTCTACTAAATTGTACCCTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTAATGATATACAGAGTAATTCTACTAAATTGTACCCTGAAGAT  235

seq1  GGTGGATTATCTCTACAATTGTCTTACATTCCAAGCTGAGTTGAAGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTATCTCTACAATTGTCTTACATTCCAAGCTGAGTTGAAGTGAC  285

seq1  AGCATAGGATGTCCACTTACTTTCCCTTCATATGGATATGTTGCCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGATGTCCACTTACTTTCCCTTCATATGGATATGTTGCCTCAGA  335

seq1  CTCCAGACCACCATTGTGCAAAACATACTGGAAGGCATTGTATGTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACCACCATTGTGCAAAACATACTGGAAGGCATTGTATGTATCAC  385

seq1  CACCAAGACAACCATTGTTGCCTTGAGGTTTAGAACAGTCCACCAGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGACAACCATTGTTGCCTTGAGGTTTAGAACAGTCCACCAGGTTC  435

seq1  TGCACACTCAGAGGGGTGAGTTTGCCCGTTTGCCAGATTGCCTGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTCAGAGGGGTGAGTTTGCCCGTTTGCCAGATTGCCTGTGCTTC  485

seq1  TATGGCACCAGTCACAGCAAATGCCCAACAAGCATCACAATCTCCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCACCAGTCACAGCAAATGCCCAACAAGCATCACAATCTCCCTGAA  535

seq1  TAGGGAAGAAAGGGTTGTCATAGATAAATAACAACCTGGCAACAAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGAAAGGGTTGTCATAGATAAATAACAACCTGGCAACAAGTTAG  585

seq1  AAAACTTATTACTGCTTGAAAATTATTTAATGTCAATTGATTGATTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATTACTGCTTGAAAATTATTTAATGTCAATTGATTGATTCCTT  635

seq1  GGAGATATCAGACTCCTAAAAGACATTACTACTGGCAGTTTGCTCATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATCAGACTCCTAAAAGACATTACTACTGGCAGTTTGCTCATGCT  685

seq1  CTAGTCATGGCCATATACATGAACATTTGAAAGGGACTACTTGTTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATGGCCATATACATGAACATTTGAAAGGGACTACTTGTTTTGTG  735

seq1  AGTTATTAAGGGCAATAAAAGGGGACACAAGTTCCTTAGAAAGATAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAAGGGCAATAAAAGGGGACACAAGTTCCTTAGAAAGATAGGTG  785

seq1  GACATTAATAGGGAGTATATGTAATATATTTCTAGGATTAAATACATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAATAGGGAGTATATGTAATATATTTCTAGGATTAAATACATTTA  835

seq1  AAATATATGAAGTATTCTAAGAAGAAAAAATATTATTAAAAAATGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGAAGTATTCTAAGAAGAAAAAATATTATTAAAAAATGAATGG  885

seq1  CATATTACTCCACACTTAATGTGCACACAAAACACCAACTCTTTTACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACTCCACACTTAATGTGCACACAAAACACCAACTCTTTTACCTT  935

seq1  TTCAACACAGTTTAAGAGGATGGGAATGTAACACCTTCATACCTGTCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACAGTTTAAGAGGATGGGAATGTAACACCTTCATACCTGTCTCC  985

seq1  GTACAGGAGTCACATATCCTTTCTTTCGCCAATCGACAAATTTGGGGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGTCACATATCCTTTCTTTCGCCAATCGACAAATTTGGGGAGA  1035

seq1  ATACTGCCAGCTTCCCGTTTCATGATACTTTTCCCCTCTCTGTGAGTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCCAGCTTCCCGTTTCATGATACTTTTCCCCTCTCTGTGAGTCCA  1085

seq1  AACTGAAATTTCAATCATCATTTTCCTGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  AACTGAAATTTCAATCATCATTTTCCTGAATTC  1118