BAC Information

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BAC

Clone NameB6Ng01-159L16
Chromosome13 (Build37)
Map Location 29,706,202 - 29,707,254
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159L16.bB6Ng01-159L16.g
ACCDH953307DH953308
length7691,049
definitionDH953307|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L16, 5' end.DH953308|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaattgaagaatcttgaatggcagagaagcacttaaagaaatg
tttaaagcccttagtgaacagggaaatgcaaatcaagatgaccctgagat
ttcaccttacaccaattagtatggctaagatcaaaaactcaggtgacagc
acatgttggctaggatgtggagaaagaggaacactcttccactgctggtg
ggattgaaagctggcataaccactctggaaatcaatctggaggttcctca
gaaaattggaagtagatttacctgaagacccagctataccactcttaggc
atatacccaaaagatgccccaccataccataggggcacatcctccactat
attcataatgaccttatttgtaatagtcagaagctggaaataatccagat
gtccgacaaacaaagaatggatacagaaaatgtggctcatttacataatg
gaatactattcagctattaagaatgaagacatcatgagttttgcagcaaa
tggatggaactagaaaatatcatcctgagtatggtaactcaaactcaaca
ggacacgcatggtatgtactcactgataaggggctatagcctccccacct
cccccgccccaaaagtacaaaatacctaggatacaatccacagaactcaa
gaaggttaacaaggataagggcccaagtaaggatgcctcaatcccagttg
ggaatgagaataatcatgggaggcagagggagagaggaatcttggtggga
gagaggagagggaggggaa

gaattctttgtttctctgtggtgacagagcttgctaaacgtagagtgctc
tacttctgtctcccacttggccaccttggcggtgaggactgcctggggct
cacttctccccatgtttcaattaatgttcagtaatgtgatttgaatgagt
gcacgttgtgtgccgtgatgattctcataattagataggaagccttagca
gcctgtgtagggaatgctctcagaaggaaccttacacatgtctggatcca
caagttggaaggaatcgccaccctagcacccatgattggtaaagaaggat
gcattgttcacagatgtgaagtcatttgggagaacaaaatagattgggca
catgtgaatgttacataaacaatagcaagctagggaatatttgaaacaaa
gacaatcttttacataggaattgttgaggaaaataatttaagaagaagag
atcagttttctttggggaaaaatggggttgatataaactttaccatgtga
attcatttccatttttatatctgtatttgttcactgcagtaacatctggg
ctttatttttcagacttgaaataacttacattcgatggtctgacctttag
ttatgattgcactgactttcagatgtaattcactatgtaattagtttatg
taaaaaagagggggctgtgggaggagcttggttcagtgttaagtggagaa
taaattgaataaagatttttaaataacttctctaacatgattagttcagt
atttgaatgtatccagcaattttttttggaactgggttttcaagtaatat
atgccttttgtaaattcataaatattttagtcatgtgaaaaatagctttc
tgtgttaattttgaaaacctgtgttatttctcaggttgcctaacattttt
gtatttattgcatgtttctgacttaaattgatgacctttaaatagcttac
tttggaataaatacagagagtcatgtggttttggtttgtttgttttatgg
cacattagcctgagtcagtgtgggatgtacttcttcattggttctactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29706202_29707254
seq2: B6Ng01-159L16.g_68_1116 (reverse)

seq1  GAGTAGAAACAATGAAGAGTAACAT-CCACACTGACCTCA-GCTAATGTG  48
      |||||||| |||||||||   |||| ||||||||| |||| |||||||||
seq2  GAGTAGAACCAATGAAGAAGTACATCCCACACTGA-CTCAGGCTAATGTG  49

seq1  CCATTAAAACAAAACAAAACAAAAACCCACATGACTCTCTTGTATTTATT  98
      ||| |||||| ||||||| |||||  ||||||||||||| ||||||||||
seq2  CCA-TAAAAC-AAACAAACCAAAA--CCACATGACTCTC-TGTATTTATT  94

seq1  -CAAAGTAAGCTATTTTAAAGGTCATCAATTTAAGTCAAGAAACATGCAA  147
       |||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  CCAAAGTAAGCTA-TTTAAAGGTCATCAATTTAAGTC-AGAAACATGCAA  142

seq1  TAAAATAC-AAAATGTTAGGCAACCTGAGAAATAACACAGGTTTTCAAAA  196
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  T-AAATACAAAAATGTTAGGCAACCTGAGAAATAACACAGGTTTTCAAAA  191

seq1  TTAACACAGAAAGCTATTTTTCACATGACTAAAATATTTATGAATTTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGAAAGCTATTTTTCACATGACTAAAATATTTATGAATTTACA  241

seq1  AAAGGCATATATTACTTGAAAATCCAGTTCC-AAAAATATTGCTGGATAC  295
      |||||||||||||||||||||| |||||||| ||||| ||||||||||||
seq2  AAAGGCATATATTACTTGAAAACCCAGTTCCAAAAAAAATTGCTGGATAC  291

seq1  ATTCAAATACTGAACTAATCATGTTAGAGAAGTTATTTAAAAATCTTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACTGAACTAATCATGTTAGAGAAGTTATTTAAAAATCTTTAT  341

seq1  TCAATTTATTCTCCACTTAACACTGAACCAAGCTCCTCCCACAGCCCCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATTCTCCACTTAACACTGAACCAAGCTCCTCCCACAGCCCCCT  391

seq1  CTTTTTTACATAAACTAATTACATAGTGAATTACATCTGAAAGTCAGTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTACATAAACTAATTACATAGTGAATTACATCTGAAAGTCAGTGC  441

seq1  AATCATAACTAAAGGTCAGACCATCGAATGTAAGTTATTTCAAGTCTGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAACTAAAGGTCAGACCATCGAATGTAAGTTATTTCAAGTCTGAA  491

seq1  AAATAAAGCCCAGATGTTACTGCAGTGAACAAATACAGATATAAAAATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCCCAGATGTTACTGCAGTGAACAAATACAGATATAAAAATGG  541

seq1  AAATGAATTCACATGGTAAAGTTTATATCAACCCCATTTTTCCCCAAAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTCACATGGTAAAGTTTATATCAACCCCATTTTTCCCCAAAGA  591

seq1  AAACTGATCTCTTCTTCTTAAATTATTTTCCTCAACAATTCCTATGTAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATCTCTTCTTCTTAAATTATTTTCCTCAACAATTCCTATGTAAA  641

seq1  AGATTGTCTTTGTTTCAAATATTCCCTAGCTTGCTATTGTTTATGTAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTCTTTGTTTCAAATATTCCCTAGCTTGCTATTGTTTATGTAACA  691

seq1  TTCACATGTGCCCAATCTATTTTGTTCTCCCAAATGACTTCACATCTGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTGCCCAATCTATTTTGTTCTCCCAAATGACTTCACATCTGTG  741

seq1  AACAATGCATCCTTCTTTACCAATCATGGGTGCTAGGGTGGCGATTCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCATCCTTCTTTACCAATCATGGGTGCTAGGGTGGCGATTCCTT  791

seq1  CCAACTTGTGGATCCAGACATGTGTAAGGTTCCTTCTGAGAGCATTCCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTGGATCCAGACATGTGTAAGGTTCCTTCTGAGAGCATTCCCT  841

seq1  ACACAGGCTGCTAAGGCTTCCTATCTAATTATGAGAATCATCACGGCACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCTGCTAAGGCTTCCTATCTAATTATGAGAATCATCACGGCACA  891

seq1  CAACGTGCACTCATTCAAATCACATTACTGAACATTAATTGAAACATGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTGCACTCATTCAAATCACATTACTGAACATTAATTGAAACATGGG  941

seq1  GAGAAGTGAGCCCCAGGCAGTCCTCACCGCCAAGGTGGCCAAGTGGGAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGAGCCCCAGGCAGTCCTCACCGCCAAGGTGGCCAAGTGGGAGA  991

seq1  CAGAAGTAGAGCACTCTACGTTTAGCAAGCTCTGTCACCACAGAGAAACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGAGCACTCTACGTTTAGCAAGCTCTGTCACCACAGAGAAACA  1041

seq1  AAGAATTC  1053
      ||||||||
seq2  AAGAATTC  1049


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