BAC Information

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BAC

Clone NameB6Ng01-160K24
Chromosome13 (Build37)
Map Location 22,089,672 - 22,090,766
singlet/doubletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24
Downstream genePrss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K24.bB6Ng01-160K24.g
ACCDH953997DH953998
length1,1241,072
definitionDH953997|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K24, 5' end.DH953998|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccgacctctccaatactataaatgtaaaggggtgttgtactttg
tcaaatgctttttcaacatctagtgagatgaccacatgattttttctatg
agtttgcttatttagtggattacgttaatggatttttgtatattgaacca
accttgcatccctgggatgagacctacttgacaatgatgaatgatggttt
tgatgtgttcctggattcagttggcaagaattttactgagtatttttgca
tcgatgctcataagcgaaattggtctgaaattgtctttctttattggatc
cttgtgtggtttggctatcaaagtaattgtggcttcgcagaatgttagtt
agagttccttctgtttctgtttttatggaatagtttgaggagtattggca
ttagctcgtctttgaaggtctgatagaattctgcactgaagccatctggc
cctgggaaagttttggttaggaggtttttaatgatttcttctatttctat
aggggatatggacctgtttcgataggttacctgctcttaatttaactttg
gtatatgatatctgtttagaaaaatcatccatattatttatattttccat
ttttgagtataggcttttgtagtatgatctaatgattgtttgaatttctt
cagtttctgttgttatgtctccattttcatttctgattttgataatttgg
atatggtctctgggccctttagttagtttggctaggtatttttctatctt
gttgattttttttaaagaaccaccttttggttttgttgatcatttgtatc
atttgaagagagcttattattcaaaatatagaaaaacacttcaagagcta
cccaacaaacaaacaacaactctaattaaatgagtattcaattaaacagt
attcccagcagagtatctaattgcccagaggcacttaaaagtgttcaagt
tctcttagtgatcaggaaatgcaatcaaacgtccttgaggttcccattac
tcattcgagctagtaaaactcagtgaacccacgttaagaggttgacaaga
gaaactcttctggcgttgtggattgctacccctcgaatcactcggcatct
cctcagaaattgacaatcaggtta
gaattctcatcagtatccattaaagcaagaggtaatttgaataaagatgt
tcttctggctgggttaaaaagataactgaggcagtcaggaattaacctag
aaccttctgatctagtcagacacggttccattgagccattggcccttgtc
tcaggtctcactactgtggtatgttaaaataaggctttagaattactgcc
ccctttaacgctactaggcaaccattcattctgaccttcccctctctact
cctagaccctaccctgcctggcagacactccccaaacttctatttttttt
ttttttttttttttaccctcaagcactgcttgtcatagaatgcacctgtt
actggagagttcctagcgtcagagcctgggtccttgaagccctaacaagt
caacctatttcaattaacaacagtagtgaagagtttagaaaggagactta
ttcaacttgaccacttgttataatagcaacaaggctcagtggtctgcccc
tcctcttccaccctcgcatccatattgcaggtcctcacatgaggttcagc
cacttacttatattaatttcattcatttatttactagtgtttgggctggg
ggttcgaggacaactttcatcagtcagtctcccttcttcctgtgggaccc
cacaagcacctttacccctgagccagacacccagctttaaataaaacaat
aaagtatgcacaattcacaactaagtagtccttgttaaggagtgttctta
cccaacaccatctcagaactgtgaaaactctggaaagataaactcccttt
ctggctggtggggaccaagacccatcattttttttctcctcccagataac
aattacaaagcaccgcttcaatggtctgatagccaagagaaggctgcttt
tgttgttcaatttgagactcaatgtgtatcgtcaactgacctaactcggg
ttcccctcctcagtgatgagatatagatgctactacttgctgagccatct
cccagcctgggttctagttcccagaaacaggcagcccccccccccccggt
cagtatggctcggccaatggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22089672_22090766
seq2: B6Ng01-160K24.g_68_1139 (reverse)

seq1  GACCATTTGCCCGAGCCAATAACTGACGGGGGGGGGGGGGGGCTGCCTGG  50
      ||||| ||| ||||||||   ||||||  |||||||||||||||||||| 
seq2  GACCA-TTGGCCGAGCCA--TACTGAC-CGGGGGGGGGGGGGCTGCCTGT  46

seq1  TTCTGTGTGAAACTAGGAACACAGGGGCTGGGAGATGGCTCAGCAAGTTA  100
      |||||   | ||||| |||| ||  |||||||||||||||||||||||  
seq2  TTCTG---GGAACTA-GAACCCA--GGCTGGGAGATGGCTCAGCAAGT--  88

seq1  AGGTAAGCATCTATAATCTCATCACTGAGGAGGTGAAACCCGAGTTTAAG  150
      ||   ||||||||| |||||||||||||||||| | ||||||||||  ||
seq2  AG--TAGCATCTAT-ATCTCATCACTGAGGAGG-GGAACCCGAGTT--AG  132

seq1  GTCAGTTGAACGATACACATTGAGTCTCAAATTGAACAAACAAAAGCAGC  200
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GTCAGTTG-ACGATACACATTGAGTCTCAAATTGAAC-AACAAAAGCAGC  180

seq1  CTTTCTCCTTGGCTATCAGACCATTGAAGCGGTGCTTTGTAATTGTTATC  250
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTCT-CTTGGCTATCAGACCATTGAAGCGGTGCTTTGTAATTGTTATC  228

seq1  TGGGAGGAGAAAAAAAATGATGGGGTCTTGGTCCCAACCAGCCAGAAAGG  300
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TGGGAGGAGAAAAAAAATGAT-GGGTCTTGGTCCCCACCAGCCAGAAAGG  277

seq1  GAGTTTATCTTTCCAGAGTTTTCACAGTTCTGAGATGGTGTTGGGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATCTTTCCAGAGTTTTCACAGTTCTGAGATGGTGTTGGGTAAGA  327

seq1  ACACTCCTTAACAAGGACTACTTAGTTGTGAATTGTGCATACTTTATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTTAACAAGGACTACTTAGTTGTGAATTGTGCATACTTTATTGT  377

seq1  TTTATTTAAAGCTGGGTGTCTGGCTCAGGGGTAAAGGTGCTTGTGGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAGCTGGGTGTCTGGCTCAGGGGTAAAGGTGCTTGTGGGGTC  427

seq1  CCACAGGAAGAAGGGAGACTGACTGATGAAAGTTGTCCTCGAACCCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAAGAAGGGAGACTGACTGATGAAAGTTGTCCTCGAACCCCCAG  477

seq1  CCCAAACACTAGTAAATAAATGAATGAAATTAATATAAGTAAGTGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACACTAGTAAATAAATGAATGAAATTAATATAAGTAAGTGGCTGA  527

seq1  ACCTCATGTGAGGACCTGCAATATGGATGCGAGGGTGGAAGAGGAGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGTGAGGACCTGCAATATGGATGCGAGGGTGGAAGAGGAGGGGC  577

seq1  AGACCACTGAGCCTTGTTGCTATTATAACAAGTGGTCAAGTTGAATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTGAGCCTTGTTGCTATTATAACAAGTGGTCAAGTTGAATAAGT  627

seq1  CTCCTTTCTAAACTCTTCACTACTGTTGTTAATTGAAATAGGTTGACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTAAACTCTTCACTACTGTTGTTAATTGAAATAGGTTGACTTG  677

seq1  TTAGGGCTTCAAGGACCCAGGCTCTGACGCTAGGAACTCTCCAGTAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCTTCAAGGACCCAGGCTCTGACGCTAGGAACTCTCCAGTAACAG  727

seq1  GTGCATTCTATGACAAGCAGTGCTTGAGGGTAAAAAAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCTATGACAAGCAGTGCTTGAGGGTAAAAAAAAAAAAAAAAAAA  777

seq1  AAATAGAAGTTTGGGGAGTGTCTGCCAGGCAGGGTAGGGTCTAGGAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGTTTGGGGAGTGTCTGCCAGGCAGGGTAGGGTCTAGGAGTAG  827

seq1  AGAGGGGAAGGTCAGAATGAATGGTTGCCTAGTAGCGTTAAAGGGGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAAGGTCAGAATGAATGGTTGCCTAGTAGCGTTAAAGGGGGCAG  877

seq1  TAATTCTAAAGCCTTATTTTAACATACCACAGTAGTGAGACCTGAGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAAAGCCTTATTTTAACATACCACAGTAGTGAGACCTGAGACAA  927

seq1  GGGCCAATGGCTCAATGGAACCGTGTCTGACTAGATCAGAAGGTTCTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAATGGCTCAATGGAACCGTGTCTGACTAGATCAGAAGGTTCTAGG  977

seq1  TTAATTCCTGACTGCCTCAGTTATCTTTTTAACCCAGCCAGAAGAACATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTGACTGCCTCAGTTATCTTTTTAACCCAGCCAGAAGAACATC  1027

seq1  TTTATTCAAATTACCTCTTGCTTTAATGGATACTGATGAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAAATTACCTCTTGCTTTAATGGATACTGATGAGAATTC  1072