BAC Information

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BAC

Clone NameB6Ng01-162A07
Chromosome13 (Build37)
Map Location 79,027,397 - 79,028,311
singlet/doubletsinglet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A07.bB6Ng01-162A07.g
ACCDH954969DH954970
length1,225914
definitionDH954969|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A07, 5' end.DH954970|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttaccccatttttaatagggttatttgtttttctggatt
ctaacttcttgggttctttgtatatactggcttttagcctcctattgtat
ttaggattggtaaagatcttttcccaatctgtttgttgcttttttgtctt
attgatagagtcctttgccttacagaagctttgcaattttaggaggtccc
atttgtctagactgaatcttacagtgtaagccactggtgttctgttcaga
aaaatttcccctgtgcccctatcttcaaggctcttcccccacttcctcct
ctataagtttcagtgtctctggttttatgtggagttccttgatctactta
gacttgagctttctacaaggagataagaatggattaattcacattcttct
acatgctaaccaccagttgtgccagcatcatttgttgaaactgctgtctt
tttttttgcactgggtggttttagctcccttgtcaaagatcaagtgacca
ttgttgtgtgggttcatttctgggtcttcaatcttattccactgacctac
ctggctgtcactgtaccagtcccatgaagtttttatcacaattgctctca
agtacagcttgagatcaggcatggtgattccaccagaggctctcttattg
ttgagaatagttttttactcccctagaagaaggaagaacaaagtgtgctt
acttcgatccttcgtagaaggaggaacaaaatgcccatggaaggaattac
agagacaaagttcagagcagagactgaaggaatgaccatctggagactgc
cctgcctggggatccaccccataaacaaccactaaacccagacactattg
caaatgccaacaagatctagctgacagaagactgataaagctgtctcctg
agaggctctgccagtgcctaacaaatacagaagtgaatactcacagtcat
ccattggatgaagcacagggtcccaatgaaggagctagagaagtacccaa
ggagctgaaggggtttgcagccccattggggaaaacaacatgaactaact
tgtatcccagagctcctgggactaaacctccatcaagaaagcccatggtg
ggactctatgtctagctgcattgtctaaaggaagtcctaatggtcatcat
ggagaagccttgttctgtgaggtctatgccatatagtagtcctaggacag
gaacctgatatgtcgttgcacctac
gaattctttatttagctctataccctgcttttattggattatttgtttct
ctgggtgctaacttcttgagttctttgtatttttttgatactagctctat
attggagatagggttggtaaagttcctttcccaatctgtgggttgctgtt
ttgtcctattgatagtgtcctttgccttacagaagctttttaattttatg
aggttgatttgtcaattttggaaacaatatgtaattaagatgagttgaca
tgtactaccatgtgatttggggaagattatttaaattttagtctttaggt
tttccattagtggaaagggtaatttgaatctcatagtgatgctttaagga
ttacataaagcattgattgaaagttctatcattagtcatcggaagatatt
ttccacaacaacagtcacattcttaaattatataaaaataaattgaacta
tttcaaaaatctactcaatgggtctgtctttaattagaatatatcttaga
tgtttctccccaccaggggatcaatcccatatacaaccaccaaacccaga
cactactgcatatgccagaaagattttgcagtcaggaccctgatatagct
ctctcttgtgaggctatgccagtacctggcaaatacagaagttgatgctc
acagtcatctattggatggaacacacagcccctaatgaaggagccagaga
aagcacccatggagttaaagggatctgcaaccctataggaggaactacga
tatgtactacacccccaagctgtttctctggttgcacatgtagcagagga
tggcttagtcagccatcagtgggaagagaggcccttggtcttgtgaagat
tctatgccccagtcaaggggaatgccaggaccagtttgtgggagtgggta
ggtttttttgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79027397_79028311
seq2: B6Ng01-162A07.g_67_980

seq1  GAATTCTTTATTTAGCTCTATACCCTGCTTTTATTGGATTATTTGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTAGCTCTATACCCTGCTTTTATTGGATTATTTGTTTCT  50

seq1  CTGGGTGCTAACTTCTTGAGTTCTTTGTATTTTTTTGATACTAGCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCTAACTTCTTGAGTTCTTTGTATTTTTTTGATACTAGCTCTAT  100

seq1  ATTGGAGATAGGGTTGGTAAAGTTCCTTTCCCAATCTGTGGGTTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGATAGGGTTGGTAAAGTTCCTTTCCCAATCTGTGGGTTGCTGTT  150

seq1  TTGTCCTATTGATAGTGTCCTTTGCCTTACAGAAGCTTTTTAATTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATTGATAGTGTCCTTTGCCTTACAGAAGCTTTTTAATTTTATG  200

seq1  AGGTTGATTTGTCAATTTTGGAAACAATATGTAATTAAGATGAGTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATTTGTCAATTTTGGAAACAATATGTAATTAAGATGAGTTGACA  250

seq1  TGTACTACCATGTGATTTGGGGAAGATTATTTAAATTTTAGTCTTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACCATGTGATTTGGGGAAGATTATTTAAATTTTAGTCTTTAGGT  300

seq1  TTTCCATTAGTGGAAAGGGTAATTTGAATCTCATAGTGATGCTTTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTAGTGGAAAGGGTAATTTGAATCTCATAGTGATGCTTTAAGGA  350

seq1  TTACATAAAGCATTGATTGAAAGTTCTATCATTAGTCATCGGAAGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAAGCATTGATTGAAAGTTCTATCATTAGTCATCGGAAGATATT  400

seq1  TTCCACAACAACAGTCACATTCTTAAATTATATAAAAATAAATTGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAACAACAGTCACATTCTTAAATTATATAAAAATAAATTGAACTA  450

seq1  TTTCAAAAATCTACTCAATGGGTCTGTCTTTAATTAGAATATATCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATCTACTCAATGGGTCTGTCTTTAATTAGAATATATCTTAGA  500

seq1  TGTTTCTCCCCACCAGGGGATCAATCCCATATACAACCACCAAACCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCCCCACCAGGGGATCAATCCCATATACAACCACCAAACCCAGA  550

seq1  CACTACTGCATATGCCAGAAAGATTTTGCAGTCAGGACCCTGATATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGCATATGCCAGAAAGATTTTGCAGTCAGGACCCTGATATAGCT  600

seq1  CTCTCTTGTGAGGCTATGCCAGTACCTGGCAAATACAGAAGTTGATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGTGAGGCTATGCCAGTACCTGGCAAATACAGAAGTTGATGCTC  650

seq1  ACAGTCATCTATTGGATGGAACACACAGCCCCTAATGAAGGAGCCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATCTATTGGATGGAACACACAGCCCCTAATGAAGGAGCCAGAGA  700

seq1  AAGCACCCATGGAGTTAAAGGGATCTGCAACCCTATAGGAGGAACTACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCATGGAGTTAAAGGGATCTGCAACCCTATAGGAGGAACTACGA  750

seq1  TATGTACTACACCCCCAAGCTGTTTCTCTGGTTGCACATGTAGCAGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTACACCCCCAAGCTGTTTCTCTGGTTGCACATGTAGCAGAGGA  800

seq1  TGGCTTAGTCAGCCATCAGTGGGAAGAGAGGCCCTTGGTCTTGTGAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTCAGCCATCAGTGGGAAGAGAGGCCCTTGGTCTTGTGAAGAT  850

seq1  TCTATGCCCCAGTCAAGGGGAATGCCAGGACCAGTTTGTGGGAGTGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCCCAGTCAAGGGGAATGCCAGGACCAGTTTGTGGGAGTGGGTA  900

seq1  GGTTTTTTTTGGGAG  915
      || ||||||||||||
seq2  GG-TTTTTTTGGGAG  914