BAC Information

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BAC

Clone NameB6Ng01-163F08
Chromosome13 (Build37)
Map Location 65,856,441 - 65,912,601
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F08.bB6Ng01-163F08.g
ACCDH955949DH955950
length1,2221,063
definitionDH955949|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F08, 5' end.DH955950|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,856,441 - 65,857,251)(65,911,535 - 65,912,601)
sequence
gaattctaagagatggataatttactccataggttccacttatcaaaatt
aagtcaaactaacataagcaacttaaacagacctaaacacctagaaaaag
agaagtcattaaaaatctgccaccaaaaagacctcaggaccatgagtttt
ggggtagaatcctagcagactttcaaggaggaggtaacaaggctactcct
caaagtattcaacaatattgaaagagaagcaacattggccaatttatttg
gtgaacccatggttactcaaatatccagtcaataaagactcaggaacaaa
agagaattgcagatcaactttccttaaagtgactgacacaaaaacacttt
ataaagcaaaataaataaaaaagaaagaaaatagaaaaaatatcaaaaga
tcatccaccatgatcaatgaggtatgattcattaaatagatgcaggaatg
tttcaacataatgtgcgtaaagtgtaaaaaaaaaaagaagtaatcatctc
actagatggtgaataattctctgacaatatccaacatcacttcatgataa
aattcttggagtgattaaggatacaagggacatacctaaacataataatg
ttgccttacagcaagcttagagcaaacattaaaataaatggagagacatt
caaattaattccactaatccccccaaaagataaggtggtccattctctcc
atatctattcaaaatattatctaaaagtttagctagagcaataaaactga
agaagacgaaagtaatataaattataaaggaggaagtaaatttatcttta
tttacagatgaagtgatagtatgcatgagtgaaccaaaacttcccaaagg
caattcctagagctgataacactttcagcaaacttgtagggtacaggatt
aactaaaaagaaaagaaaagcagtagccatcgattgtgaaaatgagttta
caagtgcaaacaaaataaacatatatcataatgtatgaatgattgttgat
acttgtcacattttttcccataatatcttgaggactcaatataagtgggt
agctaaatcctaccaaggttttgtagtacagattacttttgtatataaag
gtcatctagacctactgtgatttatagcttaatactgattattactaaag
agttacctctggttaatgaatccaaagcgctacaccttaacatatggaac
tggcatgaatgggtttctctgc
gaattccaggactcagaacagaggtgttgaaaggtcagctgttagaatgt
gtcattgttgttctttgtatcaatggcttgtctgtcacatttgagtaggt
gtgtcttggttttcatatttttcttgattattcgtggagggagatgacta
aagcgtacttggaaccatggtacagtgggtgcactggagagttgtagcca
cagggccttggaagatgttccatagtctggtatagaggatggtgcgccct
tggtctaaagtgcttggagggttagagcagacttgaaaccctgcttcatg
agtcacagctgccatcctgtcttcatcttctcctctgtacacatgtatga
atctgctgggtagcctttactgacaccttgtgactttctctcatgtgtgt
ggtactttattattctgtgactgagagagaggaaataagatttttttcca
tcctattgatttagtgactaaatcatcatctggggttaaatccttcttcc
taagaggacctacacccactagattgcccattatagagagctcttggaga
cccaatccagggcaatatcaggctctccctatcctgttttacagggtgga
aaggacaaagacctcattttcccctcctgatcaaccctgctcccagtcca
tatgtgactctgtagttttggactcggaactgttattagagggaaagttt
gttcttcatccactgcaacaaagttaacatatctcatttagatcagccgt
attaattgtaggcttgtggtgcaatgttgcttctctgttcaccttccagc
tgctttagccacctctttggtagcactagccagggaacgagaggttgaag
atacctcacaccagagcagcaaagcctctgaactcctcattccagtgtat
ccttccctgctccaatctatgacttacccattttttctggctcagctaac
aactccacctctgtcttgtgttgagagggctcctgtaattgtatggttag
cacatgggttttggggttttacaatttcctcattataatgtctccatgtc
aaatgtcttcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65856441_65857251
seq2: B6Ng01-163F08.b_485_1272

seq1  AATAGATGCAGGAATGTTTCAACATAATGTGCGTAAAGTGTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGCAGGAATGTTTCAACATAATGTGCGTAAAGTGTAAAAAAAAA  50

seq1  AAGAAGTAATTATCTCACTAGATGGTGAATAATTCTCTGACAATATCCAA  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAATCATCTCACTAGATGGTGAATAATTCTCTGACAATATCCAA  100

seq1  CATCACTTCATGATAAAATTCTTGGAGTGATTAAGGATACAAGGGATATA  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATCACTTCATGATAAAATTCTTGGAGTGATTAAGGATACAAGGGACATA  150

seq1  CCTAAACATAATAATGTTGCCTTACAGCAAGCTTAGAGCAAACATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACATAATAATGTTGCCTTACAGCAAGCTTAGAGCAAACATTAAAA  200

seq1  TAAATGGAGAGACATTCAAATTAATTCCACTAATCCCCCCAAAAGATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGAGACATTCAAATTAATTCCACTAATCCCCCCAAAAGATAAG  250

seq1  GTGGTCCATTCTCTCCATATCTATTCAAAATATTATCTAAAAGTTTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCATTCTCTCCATATCTATTCAAAATATTATCTAAAAGTTTAGCT  300

seq1  AGAGCAATAAAACTGAAGAAGACGAAAGTAATATAAATTATAAAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATAAAACTGAAGAAGACGAAAGTAATATAAATTATAAAGGAGGA  350

seq1  AGTAAATTTATCTTTATTTACAGATGAAGTGATAGTATGCATGAGTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTATCTTTATTTACAGATGAAGTGATAGTATGCATGAGTGAAC  400

seq1  CAAAACTTCCCAAAGGCAATTCCTAGAGCTGATAAACACTTTCAGCAAAC  450
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAAACTTCCCAAAGGCAATTCCTAGAGCTGAT-AACACTTTCAGCAAAC  449

seq1  TTGTAGGGTACAGGATTAACTAAAAAAGAAAAGAAAAAGCAGTAGCCATC  500
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTGTAGGGTACAGGATTAACT-AAAAAGAAAAG-AAAAGCAGTAGCCATC  497

seq1  GATTGTGAAAATGAGTTTACAAGTGCAAACAAAATAAACATATATCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGAAAATGAGTTTACAAGTGCAAACAAAATAAACATATATCATAA  547

seq1  TGTATGAATTGATTGTTGATACTTGTCACATTTTTTTCCCATAATAATCT  600
      |||||||| ||||||||||||||||||||| |||||||||||||| ||||
seq2  TGTATGAA-TGATTGTTGATACTTGTCACA-TTTTTTCCCATAAT-ATCT  594

seq1  TGAGGAACTCAATATAAGTGTGTAGGCTAAAATCTTACCAAGGTCTTTGT  650
      ||||| |||||||||||||| ||| ||| ||||| ||||||||| |||||
seq2  TGAGG-ACTCAATATAAGTGGGTA-GCT-AAATCCTACCAAGGT-TTTGT  640

seq1  AGTCACAGATTACTTTTGGTATTATTAAAGGTCATCTAAGACTACTGTGA  700
      ||| ||||||||||||| ||||   |||||||||||||   |||||||||
seq2  AGT-ACAGATTACTTTT-GTAT--ATAAAGGTCATCTAGACCTACTGTGA  686

seq1  TATGTAATAGCTTTAATATACTGATTATATACTAAAGAGTTTACTCTTGT  750
      |   | |||||||    ||||||||||| ||||||||||||  |||| ||
seq2  T---TTATAGCTT---AATACTGATTAT-TACTAAAGAGTTACCTCTGGT  729

seq1  TTAAAAATACCAAAAAGTGCAAAACCTTAACATATTG-ACT-GCGTTTAT  798
      | |  ||| |   |||| || | |||||||||||| | ||| || |  ||
seq2  TAATGAATCC---AAAGCGCTACACCTTAACATATGGAACTGGCATGAAT  776

seq1  GGGTTTTCTCTGC  811
      ||| |||||||||
seq2  GGG-TTTCTCTGC  788

seq1: chr13_65911535_65912601
seq2: B6Ng01-163F08.g_69_1131 (reverse)

seq1  ACCGAAGACAATTATGACATGGAGACAATAATAAATGAGGAAATTGTAAA  50
      ||||||||||  | ||||||||||||| ||   |||||||||||||||||
seq2  ACCGAAGACA--TTTGACATGGAGACATTA--TAATGAGGAAATTGTAAA  46

seq1  AACCCAAAACCAATGTGCTAACCATATCAATTACAGGAGCCCCTGTCACC  100
      | ||||||||| |||||||||||||| |||||||||||| |||| ||| |
seq2  ACCCCAAAACCCATGTGCTAACCATA-CAATTACAGGAG-CCCTCTCAAC  94

seq1  ACAAGACAGAGGTGGAGTTG-TGGCTGAGCCAGGAAAAAATGGGTAAGTC  149
      |||||||||||||||||||| | ||||||||| |||||||||||||||||
seq2  ACAAGACAGAGGTGGAGTTGTTAGCTGAGCCA-GAAAAAATGGGTAAGTC  143

seq1  AATAGATTGGAGCAGGGAAGGATACACTGGAATGAGGAGTTCAGAGGCTT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATAGATTGGAGCAGGGAAGGATACACTGGAATGAGGAGTTCAGAGGCTT  192

seq1  TGCTGCTCTGGTGTGAGGTATCTTCAACCCCTCGTTCCCTGGCTAGTGCT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTGCTCTGGTGTGAGGTATCTTCAACCTCTCGTTCCCTGGCTAGTGCT  242

seq1  ACCAAAGAGGTGGCTAAAGCAGCTGGAAGGTGAACAGAGAAGC-ACATTG  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCAAAGAGGTGGCTAAAGCAGCTGGAAGGTGAACAGAGAAGCAACATTG  292

seq1  CACCACAAGCCTACAATTAATACGGCTGATCT-AATGAGATATGTTAACT  347
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACCACAAGCCTACAATTAATACGGCTGATCTAAATGAGATATGTTAACT  342

seq1  TTGTTGCAGTGGATGAAGAAC-AACTTTCCCTCTAATAACAGTTCCGAGT  396
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTTGCAGTGGATGAAGAACAAACTTTCCCTCTAATAACAGTTCCGAGT  392

seq1  CCAAAACTACAGAGTCACATATGGACTGGGAGCAGGGTTGATCAGGAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTACAGAGTCACATATGGACTGGGAGCAGGGTTGATCAGGAGGG  442

seq1  GAAAATGAGGTCTTTGTCCTTTCCACCCTGTAAAACAGGATAGGGAGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGGTCTTTGTCCTTTCCACCCTGTAAAACAGGATAGGGAGAGC  492

seq1  CTGATATTGCCCTGGATTGGGTCTCCAAGAGCTCTCTATAATGGGCAATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTGCCCTGGATTGGGTCTCCAAGAGCTCTCTATAATGGGCAATC  542

seq1  TAGTGGGTGTAGGTCCTCTTAGGAAGAAGGATTTAACCCCAGATGATGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTGTAGGTCCTCTTAGGAAGAAGGATTTAACCCCAGATGATGAT  592

seq1  TTAGTCACTAAATCAATAGGATGGAAAAAAATCTTATTTCCTCTCTCTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTAAATCAATAGGATGGAAAAAAATCTTATTTCCTCTCTCTCA  642

seq1  GTCACAGAATAATAAAGTACCACACACATGAGAGAAAGTCACAAGGTGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAATAATAAAGTACCACACACATGAGAGAAAGTCACAAGGTGTC  692

seq1  AGTAAAGGCTACCCAGCAGATTCATACATGTGTACAGAGGAGAAGATGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGCTACCCAGCAGATTCATACATGTGTACAGAGGAGAAGATGAA  742

seq1  GACAGGATGGCAGCTGTGACTCATGAAGCAGGGTTTCAAGTCTGCTCTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATGGCAGCTGTGACTCATGAAGCAGGGTTTCAAGTCTGCTCTAA  792

seq1  CCCTCCAAGCACTTTAGACCAAGGGCGCACCATCCTCTATACCAGACTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAGCACTTTAGACCAAGGGCGCACCATCCTCTATACCAGACTAT  842

seq1  GGAACATCTTCCAAGGCCCTGTGGCTACAACTCTCCAGTGCACCCACTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCTTCCAAGGCCCTGTGGCTACAACTCTCCAGTGCACCCACTGT  892

seq1  ACCATGGTTCCAAGTACGCTTTAGTCATCTCCCTCCACGAATAATCAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTTCCAAGTACGCTTTAGTCATCTCCCTCCACGAATAATCAAGA  942

seq1  AAAATATGAAAACCAAGACACACCTACTCAAATGTGACAGACAAGCCAAT  996
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATATGAAAACCAAGACACACCTACTCAAATGTGACAGACAAGCCATT  992

seq1  GATACAAAGAACAACAATGACACATTCTAACAGCTGACCTTTCAACACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAGAACAACAATGACACATTCTAACAGCTGACCTTTCAACACCT  1042

seq1  CTGTTCTGAGTCCTGGAATTC  1067
      |||||||||||||||||||||
seq2  CTGTTCTGAGTCCTGGAATTC  1063