BAC Information

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BAC

Clone NameB6Ng01-163N10
Chromosome13 (Build37)
Map Location 58,565,762 - 58,759,505
singlet/doubletdoublet
Overlap geneLOC100041086, Slc28a3
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneLOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1, Mak10, Golph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163N10.bB6Ng01-163N10.g
ACCDH956324DH956325
length1,077431
definitionDH956324|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N10, 5' end.DH956325|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,565,762 - 58,566,839)(58,759,069 - 58,759,505)
sequence
gaattccaagcctagggttggctcaaggactacctagggtattggtgaaa
gccaggaagcaaagtttgattttgcttaggtatttggcaagtcattgttt
ggaggcacctataataaaacaatactgaaagaaagcacacagatccattc
acaaggacaagtttggagcatttgttatacaggatgccaaggttccagga
gactaagtttccgtgaaactctttgcctcaggactgctttcaggtttcta
ggcctgtcatgcgagtcactattggagtggttgtaacacagaatatattg
ctttaaatgctgggtgacggcaatgcctgtgtccatggggggcatttggc
agccattcctgtgggtgatatgggagaggtgacaacatggcgctgatggg
tagctcatcccacacagagaggcttaggaggagtgacacttttagacacg
tatatgaatgcccccaaatgctgatgacactcagtgctagaatccaatga
gtgctggagtttcagagtcactctgttgtacaaagatgtgaggccggggg
tttctgctgtctacgatggaaaagacttcagttactaatctctagacttg
aattttaaaatgtctgttatatcagtagcactctcagaagaatcatggga
taaatccccagcctcttcagttttggattcttttctttctttcttttttt
ttttcttttcttttcttttctttttttttttttaaatgtgggagctagcc
ttttgaatttcccttgagaaaaaattaaaaaattagatttcaatgtagct
ggaaggaagtggatacaacagacacacatttgtgtggatggtaacgaagc
attcacctatagatttgtgtggatggtaacgaagcattcacctatagatt
tgtggtggatggtaacgaagcattcaccttatagagcatactgtcagtgc
tgttcatgatttacttggtatttggaagaaaagcgttgtcatggccacac
tgcaacaaaccatgaggattgaacggcttacagatgaatcacagctttac
gtggagcagagaagcaagtgttcttta
acacagttcaacagcagtaaactaaaggaacaaagaattaaaatgaaggc
aaatcttaatgcctctgtgaataagccggtatgcagccttctggttcttt
atagatgcaataattgggttttgaggcagagactgagcttcctggaagtc
aaaccaaaaaggaaaacaaggtgaatcatgtaacagccaatcaggaagag
gaagccaaaccactgctcaccataagttccaggaaaatcctttgtgttca
gtttcacggtacaagttgttgtgagacagaactcagcattcctggagtca
ctccatgagaaatgttccctgggctctaatctagatcatgatagtgtaga
gtccccgtaagacaatgacgtgcccaggggttaaacaatatcagttggtg
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58565762_58566839
seq2: B6Ng01-163N10.b_47_1123

seq1  GAATTCCAAGCCTAGGGTTGGCTCAAGGACTACCTAGGGTATTGGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCTAGGGTTGGCTCAAGGACTACCTAGGGTATTGGTGAAA  50

seq1  GCCAGGAAGCAAAGTTTGATTTTGCTTAGGTATTTGGCAAGTCATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTTGATTTTGCTTAGGTATTTGGCAAGTCATTGTTT  100

seq1  GGAGGCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTC  150

seq1  ACAAGGACAAGTTTGGAGCATTTGTTATACAGGATGCCAAGGTTCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAAGTTTGGAGCATTTGTTATACAGGATGCCAAGGTTCCAGGA  200

seq1  GACTAAGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTTCAGGTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTTCAGGTTTCTA  250

seq1  GGCCTGTCATGCGAGTCACTATTGGAGTGGTTGTAACACAGAATATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCATGCGAGTCACTATTGGAGTGGTTGTAACACAGAATATATTG  300

seq1  CTTTAAATGCTGGGTGACGGCAATGCCTGTGTCCATGGGGGGCATTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATGCTGGGTGACGGCAATGCCTGTGTCCATGGGGGGCATTTGGC  350

seq1  AGCCATTCCTGTGGGTGATATGGGAGAGGTGACAACATGGCGCTGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCTGTGGGTGATATGGGAGAGGTGACAACATGGCGCTGATGGG  400

seq1  TAGCTCATCCCACACAGAGAGGCTTAGGAGGAGTGACACTTTTAGACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATCCCACACAGAGAGGCTTAGGAGGAGTGACACTTTTAGACACG  450

seq1  TATATGAATGCCCCCAAATGCTGATGACACTCAGTGCTAGAATCCAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATGCCCCCAAATGCTGATGACACTCAGTGCTAGAATCCAATGA  500

seq1  GTGCTGGAGTTTCAGAGTCACTCTGTTGTACAAAGATGTGAGGCCGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGTTTCAGAGTCACTCTGTTGTACAAAGATGTGAGGCCGGGGG  550

seq1  TTTCTGCTGTCTACGATGGAAAAGACTTCAGTTACTAATCTCTAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGTCTACGATGGAAAAGACTTCAGTTACTAATCTCTAGACTTG  600

seq1  AATTTTAAAATGTCTGTTATATCAGTAGCACTCTCAGAAGAATCATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAATGTCTGTTATATCAGTAGCACTCTCAGAAGAATCATGGGA  650

seq1  TAAATCCCCAGCCTCTTCAG-TTTGGATTCTTTTCTTTCTTTCTTTTTTT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAATCCCCAGCCTCTTCAGTTTTGGATTCTTTTCTTTCTTTCTTTTTTT  700

seq1  TTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTAAATGT-GGAGCTAGCC  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTAAATGTGGGAGCTAGCC  750

seq1  TTTTGAATTT-CCTTGAGAAAAAATTAAAAAATTAGATTTCAATGTAGCT  797
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTCCCTTGAGAAAAAATTAAAAAATTAGATTTCAATGTAGCT  800

seq1  GGAAGGAAGTGGATACAACAGACAACACATTTGTGTGGATGGTAACGAAG  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAAGGAAGTGGATACAACAGAC-ACACATTTGTGTGGATGGTAACGAAG  849

seq1  CATTCACCTATAGATTTGTGTGGATGGTAACGAAGCATTCACCTATAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCTATAGATTTGTGTGGATGGTAACGAAGCATTCACCTATAGAT  899

seq1  TTGT-GTGGATGGTAACGAAGCATTCACC-TATAGGAGCATACTGTCAGT  945
      |||| |||||||||||||||||||||||| |||| |||||||||||||||
seq2  TTGTGGTGGATGGTAACGAAGCATTCACCTTATA-GAGCATACTGTCAGT  948

seq1  GCTGTTCCATGATTTACTTGGTATTTGGAAGGAAAAGCGTTGTCATGGCA  995
      |||||| ||||||||||||||||||||||| |||||||||||||||||| 
seq2  GCTGTT-CATGATTTACTTGGTATTTGGAA-GAAAAGCGTTGTCATGGCC  996

seq1  ACACTGCAACAAACAATGAGGAATGGAACGGCATACAGATGAATCACAGC  1045
      |||||||||||||| |||||| || ||||||| |||||||||||||||||
seq2  ACACTGCAACAAACCATGAGG-ATTGAACGGCTTACAGATGAATCACAGC  1045

seq1  TATACGTGAGGCAGAGAAGCAAGTGTTCCTTTA  1078
      | ||||||  ||||||||||||||||| |||||
seq2  TTTACGTGGAGCAGAGAAGCAAGTGTT-CTTTA  1077

seq1: chr13_58759069_58759505
seq2: B6Ng01-163N10.g_66_502 (reverse)

seq1  CACACACACACACACACACACACACACACACCACCAACTGATATTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCACCAACTGATATTGTTTA  50

seq1  ACCCCTGGGCACGTCATTGTCTTACGGGGACTCTACACTATCATGATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGGCACGTCATTGTCTTACGGGGACTCTACACTATCATGATCTA  100

seq1  GATTAGAGCCCAGGGAACATTTCTCATGGAGTGACTCCAGGAATGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGCCCAGGGAACATTTCTCATGGAGTGACTCCAGGAATGCTGAG  150

seq1  TTCTGTCTCACAACAACTTGTACCGTGAAACTGAACACAAAGGATTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTCACAACAACTTGTACCGTGAAACTGAACACAAAGGATTTTCC  200

seq1  TGGAACTTATGGTGAGCAGTGGTTTGGCTTCCTCTTCCTGATTGGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTATGGTGAGCAGTGGTTTGGCTTCCTCTTCCTGATTGGCTGTT  250

seq1  ACATGATTCACCTTGTTTTCCTTTTTGGTTTGACTTCCAGGAAGCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTCACCTTGTTTTCCTTTTTGGTTTGACTTCCAGGAAGCTCAGT  300

seq1  CTCTGCCTCAAAACCCAATTATTGCATCTATAAAGAACCAGAAGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCAAAACCCAATTATTGCATCTATAAAGAACCAGAAGGCTGCA  350

seq1  TACCGGCTTATTCACAGAGGCATTAAGATTTGCCTTCATTTTAATTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGCTTATTCACAGAGGCATTAAGATTTGCCTTCATTTTAATTCTTT  400

seq1  GTTCCTTTAGTTTACTGCTGTTGAACTGTGTGAATTC  437
      |||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTAGTTTACTGCTGTTGAACTGTGTGAATTC  437