BAC Information

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BAC

Clone NameB6Ng01-163O19
Chromosome13 (Build37)
Map Location 97,593,658 - 97,724,596
singlet/doubletdoublet
Overlap geneLOC625662
Upstream geneIqgap2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456
Downstream gene1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O19.bB6Ng01-163O19.g
ACCDH956388DH956389
length1,0761,143
definitionDH956388|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O19, 5' end.DH956389|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,723,520 - 97,724,596)(97,593,658 - 97,594,802)
sequence
gaattcagacagagagtttggtgccttatcccaggacacccttgttcaag
gtggctcttgctaccgaccccaatggccgtgggactctgtttcaaaaacc
ttcttggtttctgctagatgatcggcacttcactacatttttcaataaaa
ggttccaattacactggctgtgaatgtttgcttcacaggagaggcagctt
cctgggttaagacattcttcataagacatctggaagatgctcggtttggc
ttttgtttttcaccaccctcacagcaagaatgtcaaaggacagcctgcag
ccaactcttaagacactcgctcatcgtagctatttgcattgtcttttgtc
cgtccaggctggctaagctgcaaactgtgactcaaaatcaagtcactcca
acaagcctttactcctgagcccccgcccccaagtcctgtatggtggtcta
caggtttgcagagatgtggcttttcataccaatcctttccctgctcgtgg
tctacttccctcatttagaccatgatgaaggtcagctcattaaaggcaag
tggtgacgtaactctcaaacgcttttattgcaccctgatgagagccggca
gcagaagttctcagtgaaaataatagaggatttaaaaatatgattattgt
tgtgctaagtatgccagtgtatgatatggcttagctttggaaaaaaaatc
tcagaactggggctggagatacagcttagccatagagcttgtgaaacatg
tacaaggcctaggttcattccctgggaccatcctcctcctcttctgaaga
ctggggagtgagtgcttagaacgtaagtatgcacttcagattgagtgtgc
acgtgcgcgcgcgcgcgcgcgcgcgcacacacacacacacacacacacac
acacacacacacacacggaaattcactgtgggtttgaggaacaaaatagt
gacaagatagccagaacctaaatgtgacacaccttaccagcaatgcctgg
attaaagttccaggtgtgtaattccatacagtaaaaagaccacctgacgc
ttaatataaatgtggtgagttaaaga
gaattctcagttcttcccacatcatgtctgcctgcatactggctatgctt
cctgccataattatgagactgaacatctgaaagtgtaagccagctccaat
taaatatcctttataaaagctgccttggtcatggtgtctcttcacagcag
tggaaaccctaagatgccattgtaaaagtagttttaagaaagactcgtca
cattgatgattcttagtaatttttaaaggatttgtttttctcctacatgt
tacctctttttttttttttactgtaatgacccacaagagatatttgttga
cacccatgctgattaagctaattaaaaggtttaagttctatttatttatg
gccagcttgtgtctctgaagagtttcttggtgtccgtgctcaggggcatg
cagagtttttaaagaagaacccacaaagaccatcatttgcatcaaactta
gatgagggtcagagtaaccttgaaacattcattcctggcagagcattgca
gtattttagacataacgtgcctattatttttggtgaatacatctggacta
tggtcaagaccatgaaaagctcagatgtgttgccaaggcaaatgggtctg
ttgagggtagtggactgagaactgtctaagagcaaaatgaagtcagaaca
gcccacttgaaataaagtcttcagatgattacagtagtagtaatgagtaa
atattagcagaagcttggggttagtgaaagtgtctagtgccgggaacatt
actggactgtggtagtctctgtctccagggactgtcagcagtgctgttgc
tgccatcatctttgcctcttagaacattgatgtgcgtctcagggcaccat
tatttcagatagactgaaaccatgcctttgtgtaggctgagcagactgtt
actgttggtctttatttctttgtaagttaacttcccaggacttagatttt
ttcttttattttaatttaaatccgtttttaataactaccatgtaccatgc
acccttcctccctcccagctaagataaaatattgaatcataaatatttag
cctatgatcacatacctcaatcaccaatctaggctacttctagttttagt
gatcaagaaaaatagtggttgcccaaacattaaatgtaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_97723520_97724596
seq2: B6Ng01-163O19.b_43_1118 (reverse)

seq1  TCTTTAA-ACTCCACAATTTTAATTAAAGTCAAGTGGTCCTTTTACCTGA  49
      |||||||  | ||||| || || | |  |||| |||||| ||||||   |
seq2  TCTTTAACTCACCACATTTATATTAAGCGTCAGGTGGTCTTTTTACTGTA  50

seq1  TGGAAATGTACACACCCTGAACTTTTAATCAGGCATTGCTGGTAAAGTGT  99
      |||||   ||||||||  ||||||| |  |||||||||||||||| ||||
seq2  TGGAA--TTACACACCTGGAACTTTAATCCAGGCATTGCTGGTAAGGTGT  98

seq1  GTCACATTTAGGTTCTGGCTATCTTGTCACTATTTTGTTCCTCAAACCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTAGGTTCTGGCTATCTTGTCACTATTTTGTTCCTCAAACCCA  148

seq1  CAGTGAATTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  198

seq1  GTGCGCGCGCGCGCGCGCGCGCGCACGTGCACACTCAATCTGAAGTGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCGCGCGCGCGCGCGCGCGCACGTGCACACTCAATCTGAAGTGCAT  248

seq1  ACTTACGTTCTAAGCACTCACTCCCCAGTCTTCAGAAGAGGAGGAGGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACGTTCTAAGCACTCACTCCCCAGTCTTCAGAAGAGGAGGAGGATG  298

seq1  GTCCCAGGGAATGAACCTAGGCCTTGTACATGTTTCACAAGCTCTATGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGAATGAACCTAGGCCTTGTACATGTTTCACAAGCTCTATGGC  348

seq1  TAAGCTGTATCTCCAGCCCCAGTTCTGAGATTTTTTTTCCAAAGCTAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTATCTCCAGCCCCAGTTCTGAGATTTTTTTTCCAAAGCTAAGC  398

seq1  CATATCATACACTGGCATACTTAGCACAACAATAATCATATTTTTAAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATACACTGGCATACTTAGCACAACAATAATCATATTTTTAAATC  448

seq1  CTCTATTATTTTCACTGAGAACTTCTGCTGCCGGCTCTCATCAGGGTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTATTTTCACTGAGAACTTCTGCTGCCGGCTCTCATCAGGGTGCA  498

seq1  ATAAAAGCGTTTGAGAGTTACGTCACCACTTGCCTTTAATGAGCTGACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCGTTTGAGAGTTACGTCACCACTTGCCTTTAATGAGCTGACCT  548

seq1  TCATCATGGTCTAAATGAGGGAAGTAGACCACGAGCAGGGAAAGGATTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGGTCTAAATGAGGGAAGTAGACCACGAGCAGGGAAAGGATTGG  598

seq1  TATGAAAAGCCACATCTCTGCAAACCTGTAGACCACCATACAGGACTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGCCACATCTCTGCAAACCTGTAGACCACCATACAGGACTTGG  648

seq1  GGGCGGGGGCTCAGGAGTAAAGGCTTGTTGGAGTGACTTGATTTTGAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGGCTCAGGAGTAAAGGCTTGTTGGAGTGACTTGATTTTGAGTC  698

seq1  ACAGTTTGCAGCTTAGCCAGCCTGGACGGACAAAAGACAATGCAAATAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGCAGCTTAGCCAGCCTGGACGGACAAAAGACAATGCAAATAGC  748

seq1  TACGATGAGCGAGTGTCTTAAGAGTTGGCTGCAGGCTGTCCTTTGACATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATGAGCGAGTGTCTTAAGAGTTGGCTGCAGGCTGTCCTTTGACATT  798

seq1  CTTGCTGTGAGGGTGGTGAAAAACAAAAGCCAAACCGAGCATCTTCCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGAGGGTGGTGAAAAACAAAAGCCAAACCGAGCATCTTCCAGA  848

seq1  TGTCTTATGAAGAATGTCTTAACCCAGGAAGCTGCCTCTCCTGTGAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATGAAGAATGTCTTAACCCAGGAAGCTGCCTCTCCTGTGAAGCA  898

seq1  AACATTCACAGCCAGTGTAATTGGAACCTTTTATTGAAAAATGTAGTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACAGCCAGTGTAATTGGAACCTTTTATTGAAAAATGTAGTGAA  948

seq1  GTGCCGATCATCTAGCAGAAACCAAGAAGGTTTTTGAAACAGAGTCCCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGATCATCTAGCAGAAACCAAGAAGGTTTTTGAAACAGAGTCCCAC  998

seq1  GGCCATTGGGGTCGGTAGCAAGAGCCACCTTGAACAAGGGTGTCCTGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGGGGTCGGTAGCAAGAGCCACCTTGAACAAGGGTGTCCTGGGA  1048

seq1  TAAGGCACCAAACTCTCTGTCTGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  TAAGGCACCAAACTCTCTGTCTGAATTC  1076

seq1: chr13_97593658_97594802
seq2: B6Ng01-163O19.g_68_1210

seq1  GAATTCTCAGTTCTTCCCACATCATGTCTGCCTGCATACTGGCTATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCTTCCCACATCATGTCTGCCTGCATACTGGCTATGCTT  50

seq1  CCTGCCATAATTATGAGACTGAACATCTGAAAGTGTAAGCCAGCTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATAATTATGAGACTGAACATCTGAAAGTGTAAGCCAGCTCCAAT  100

seq1  TAAATATCCTTTATAAAAGCTGCCTTGGTCATGGTGTCTCTTCACAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCCTTTATAAAAGCTGCCTTGGTCATGGTGTCTCTTCACAGCAG  150

seq1  TGGAAACCCTAAGATGCCATTGTAAAAGTAGTTTTAAGAAAGACTCGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCCTAAGATGCCATTGTAAAAGTAGTTTTAAGAAAGACTCGTCA  200

seq1  CATTGATGATTCTTAGTAATTTTTAAAGGATTTGTTTTTCTCCTACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGATTCTTAGTAATTTTTAAAGGATTTGTTTTTCTCCTACATGT  250

seq1  TACCTCTTTTTTTTTTTTTACTGTAATGACCCACAAGAGATATTTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTTTTTTTTTTTACTGTAATGACCCACAAGAGATATTTGTTGA  300

seq1  CACCCATGCTGATTAAGCTAATTAAAAGGTTTAAGTTCTATTTATTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGCTGATTAAGCTAATTAAAAGGTTTAAGTTCTATTTATTTATG  350

seq1  GCCAGCTTGTGTCTCTGAAGAGTTTCTTGGTGTCCGTGCTCAGGGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTGTGTCTCTGAAGAGTTTCTTGGTGTCCGTGCTCAGGGGCATG  400

seq1  CAGAGTTTTTAAAGAAGAACCCACAAAGACCATCATTTGCATCAAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTTTAAAGAAGAACCCACAAAGACCATCATTTGCATCAAACTTA  450

seq1  GATGAGGGTCAGAGTAACCTTGAAACATTCATTCCTGGCAGAGCATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGTCAGAGTAACCTTGAAACATTCATTCCTGGCAGAGCATTGCA  500

seq1  GTATTTTAGACATAACGTGCCTATTATTTTTGGTGAATACATCTGGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAGACATAACGTGCCTATTATTTTTGGTGAATACATCTGGACTA  550

seq1  TGGTCAAGACCATGAAAAGCTCAGATGTGTTGCCAAGGCAAATGGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGACCATGAAAAGCTCAGATGTGTTGCCAAGGCAAATGGGTCTG  600

seq1  TTGAGGGTAGTGGACTGAGAACTGTCTAAGAGCAAAATGAAGTCAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTAGTGGACTGAGAACTGTCTAAGAGCAAAATGAAGTCAGAACA  650

seq1  GCCCACTTGAAATAAAGTCTTCAGATGATTACAGTAGTAGTAATGAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTGAAATAAAGTCTTCAGATGATTACAGTAGTAGTAATGAGTAA  700

seq1  ATATTAGCAGAAGCTTGGGGTTAGTGAAAGTGTCTAGTGCCGGGAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCAGAAGCTTGGGGTTAGTGAAAGTGTCTAGTGCCGGGAACATT  750

seq1  ACTGGACTGTGGTAGTCTCTGTCTCCAGGGACTGTCAGCAGTGCTGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTGTGGTAGTCTCTGTCTCCAGGGACTGTCAGCAGTGCTGTTGC  800

seq1  TGCCATCATCTTTGCCTCTTAGAACATTGATGTGCGTCTCAGGGCACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCATCTTTGCCTCTTAGAACATTGATGTGCGTCTCAGGGCACCAT  850

seq1  TATTTCAGATAGACTGAAACCATGCCTTTGTGTAGGCTGAGCAGACTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGATAGACTGAAACCATGCCTTTGTGTAGGCTGAGCAGACTGTT  900

seq1  ACTGTTGGTCTTTATTTCTTTGTAAGTTAACTT-CCAGGACTTAGA-TTT  948
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  ACTGTTGGTCTTTATTTCTTTGTAAGTTAACTTCCCAGGACTTAGATTTT  950

seq1  TTCTTTTATTTTAATTTAATTCGTTTTTTAATAACTA-CATGTACCATGC  997
      ||||||||||||||||||| ||  ||||||||||||| ||||||||||||
seq2  TTCTTTTATTTTAATTTAAATCCGTTTTTAATAACTACCATGTACCATGC  1000

seq1  ACCCTT-CTCCCTCACAGCTAAAGATAAAAATATGAATCATAAAATATTA  1046
      |||||| ||||||| ||||| |||||||||   |||||||||||   |||
seq2  ACCCTTCCTCCCTCCCAGCT-AAGATAAAATATTGAATCATAAATATTTA  1049

seq1  G-CTATAGATCACATACCTCAAATCACC-ATCTAAGCTAACTTCTAGTTT  1094
      | |||| ||||||||||||| ||||||| ||||| ||| |||||||||||
seq2  GCCTAT-GATCACATACCTC-AATCACCAATCTAGGCT-ACTTCTAGTTT  1096

seq1  TAGGAATCATAGAAAAATAGTTGTTTTCACAAACATTAAAATGTTAAGTG  1144
      |||  |||| |||||||||| || || | |||||||| ||||| ||||||
seq2  TAGTGATCA-AGAAAAATAG-TGGTTGCCCAAACATT-AAATG-TAAGTG  1142

seq1  C  1145
      |
seq2  C  1143