BAC Information

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BAC

Clone NameB6Ng01-164A09
Chromosome13 (Build37)
Map Location 91,167,721 - 91,321,567
singlet/doubletdoublet
Overlap geneAtg10
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190, EG435376, Rps23
Downstream geneLOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164A09.bB6Ng01-164A09.g
ACCDH956461DH956462
length1,198828
definitionDH956461|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A09, 5' end.DH956462|Mus musculus domesticus DNA, BAC clone: B6Ng01-164A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,167,721 - 91,168,735)(91,320,743 - 91,321,567)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattggcggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcaattcttgatcttacatcacaagccattgccgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttaactcccttgtcaaagatcaagt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggtttttccctatctcttaca
cagtgaggagaaaccagcaaccccacagtcattacacagctatctccttc
ccagccatcagtctcccaataaaaaccatggtctgacccagcattctaaa
tttctccacggtatgtgcttgtcctgcctttgtgctactctgggatttaa
tttcaaacttccaaaatggcctctgttagtctcctagctctagtgctggg
tgtccatgcctataaacttcaaacataaatgtaatgtattctgtgcggaa
ctacactctactactcctcttccttacagggcaaaatcaaatgtaccagt
ataatagtcagctcctctcatgggcctatctgcaccactgtctttcttcc
caggaaccagggtcttatgaagggagcggacccacttcatcacatcacag
gcacccagccagcctttgcctccttggctttttctattaacatcgcctct
ctgaagtacctgcttcccccgcttcattcctggcctttcccaacgtgg
gaattcactctgtagaccagggtggcctcgaactcagaaattcgcctgct
tctgcctcccaagtgctgggattaaaggcgtgcgccaccatcacccagcc
agtgtttacttcttaaaaaggcttagttttgaatttttattaaagtaagt
gtgtgtgtgtgtttgtgtgtgtgtgtttggcatatacatgccacatgtgt
gaaggtgctgtggaggccaaaagagtgttctggatgctgtcaggtggagt
tacagttagctgtgatccacacaaatacggctgctgggaactgtggtcat
ttggaaaagcagcggatcctaagttctacacctgaagctaactgagctca
gactggctatccacctaagagtcccctgcctttccttcctaacatgccag
gattgcaggcactcgccaccacacctggccttcctgtccataattcataa
cattggcataaaagtgtcttttttatgttggctagagaaagtaaagaaga
ctcatttgtttcactggatatgacacttggaagtagactttaggattacc
caaattctggttattgctgagaaaggcttttccatcattcagagagtgat
aaataaatgctcctctcttttggagcattttgcctggggctggagaagag
atggagggcaactgcactcatcagactgtaccaagaaaaagataagattt
ctcacagtatttccaaattctctccgatacaccctgctgtacttttcaaa
tgtgaatttttatgcatgtgaaaagggtcaggcagtgaattgaatattgt
gacaatctagaaggctaagacaagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91167721_91168735
seq2: B6Ng01-164A09.b_234_1244

seq1  CTTTGCAATTTTATGAGGTCCCATTTATCAATTCTTGATCTTACATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAATTTTATGAGGTCCCATTTATCAATTCTTGATCTTACATCACA  50

seq1  AGCCATTGCCGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGCCGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAA  100

seq1  GGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150

seq1  TGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAA  200

seq1  TGGATCAATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACC  250

seq1  ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAACTCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAACTCCCTTG  300

seq1  TCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAAT  350

seq1  TCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTT  400

seq1  TGATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCA  450

seq1  CCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTC  500

seq1  CCTATCTCTTACACAGTGAGGAGAAACCAGCAACCCCACAGTCATTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTTACACAGTGAGGAGAAACCAGCAACCCCACAGTCATTACAC  550

seq1  AGCTATCTCCTTCCCAGCCATCAGTCTCCCAATAAAAACCATGGTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCCTTCCCAGCCATCAGTCTCCCAATAAAAACCATGGTCTGAC  600

seq1  CCAGCATTCTAAATTTCTCCACGGTATGTGCTTGTCCTGCCTTTGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCTAAATTTCTCCACGGTATGTGCTTGTCCTGCCTTTGTGCTA  650

seq1  CTCTGGGATTTAATTTCAAACTTCCAAAATGGCCTCTGTTAGTCTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATTTAATTTCAAACTTCCAAAATGGCCTCTGTTAGTCTCCTAG  700

seq1  CTCTAGTGCTGGGTGTCCATGCCTATAAACTTCAAACATAAATGTAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGCTGGGTGTCCATGCCTATAAACTTCAAACATAAATGTAATGT  750

seq1  ATTCTGTGCGGAACTACACTCTACTACTCCTC-TCCTTACAGGGCAAAAT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTCTGTGCGGAACTACACTCTACTACTCCTCTTCCTTACAGGGCAAAAT  800

seq1  CCAAATGTACCAGTATATTAGTCAGCCCCTCCAATGGGCCTATCTGCACC  849
       |||||||||||||||| |||||||| ||||  |||||||||||||||||
seq2  -CAAATGTACCAGTATAATAGTCAGCTCCTCTCATGGGCCTATCTGCACC  849

seq1  ACTGTCTTTCTTCCCAAGGAACCA-GGTCTTATGAAGGGAGCGAACCCAC  898
      ||||||||||||||| |||||||| |||||||||||||||||| ||||||
seq2  ACTGTCTTTCTTCCC-AGGAACCAGGGTCTTATGAAGGGAGCGGACCCAC  898

seq1  -TCATCACATCACA-GCAACCAGCCAGCCCTTTGCCCTCCTGGGCTTTTT  946
       ||||||||||||| ||| |||||||| |||||| |||||| ||||||||
seq2  TTCATCACATCACAGGCACCCAGCCAG-CCTTTG-CCTCCTTGGCTTTTT  946

seq1  CATAATAAACATCG-CTCTCTGAAGTTACCTGCTTACACACGTCTCATTT  995
      |   || ||||||| |||||||||| ||||||||| | | ||  ||||| 
seq2  C--TATTAACATCGCCTCTCTGAAG-TACCTGCTT-CCCCCGCTTCATTC  992

seq1  CCTGCCTTTCCCAACTGTGG  1015
      |  |||||||||||| ||||
seq2  CTGGCCTTTCCCAAC-GTGG  1011

seq1: chr13_91320743_91321567
seq2: B6Ng01-164A09.g_68_895 (reverse)

seq1  CATTCTTGTCTTAGCCTTCTAGATTGTCACAATAATCAATTCACTGCTTG  50
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CATTCTTGTCTTAGCCTTCTAGATTGTCACAATATTCAATTCACTGCCTG  50

seq1  ACCCTTTTCACATGCATAAAAATTCACATTTGAAAAGTACAGCAGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTCACATGCATAAAAATTCACATTTGAAAAGTACAGCAGGGTGT  100

seq1  ATCGGAGAGAATTTGGAAATACTGTGAGAAATCTTATC-TTTTCTTGGTA  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCGGAGAGAATTTGGAAATACTGTGAGAAATCTTATCTTTTTCTTGGTA  150

seq1  CAGTCTGATGAGTGCAGTTGCCCTCCATCTCTTCTCCAGCCCCAGGC-AA  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTCTGATGAGTGCAGTTGCCCTCCATCTCTTCTCCAGCCCCAGGCAAA  200

seq1  ATGCTCC-AAAGAGAGGAGCATTTATTTATCACTCTCTGAATGATGGAAA  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAAAAGAGAGGAGCATTTATTTATCACTCTCTGAATGATGGAAA  250

seq1  AGCCTTTCTCAGCAATAACCAGAATTTGGGTAATCCTAAAGTCTACTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTCAGCAATAACCAGAATTTGGGTAATCCTAAAGTCTACTTCC  300

seq1  AAGTGTCATATCCAGTGAAACAAATGAGTCTTCTTTACTTTCTCTAGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCATATCCAGTGAAACAAATGAGTCTTCTTTACTTTCTCTAGCCA  350

seq1  ACATAAAAAAGACACTTTTATGCCAATGTTATGAATTATGGACAGGAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAAAGACACTTTTATGCCAATGTTATGAATTATGGACAGGAAGG  400

seq1  CCAGGTGTGGTGGCGAGTGCCTGCAATCCTGGCATGTTAGGAAGGAAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGGTGGCGAGTGCCTGCAATCCTGGCATGTTAGGAAGGAAAGG  450

seq1  CAGGGGACTCTTAGGTGGATAGCCAGTCTGAGCTCAGTTAGCTTCAGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACTCTTAGGTGGATAGCCAGTCTGAGCTCAGTTAGCTTCAGGTG  500

seq1  TAGAACTTAGGATCCGCTGCTTTTCCAAATGACCACAGTTCCCAGCAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTAGGATCCGCTGCTTTTCCAAATGACCACAGTTCCCAGCAGCC  550

seq1  GTATTTGTGTGGATCACAGCTAACTGTAACTCCACCTGACAGCATCCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGTGGATCACAGCTAACTGTAACTCCACCTGACAGCATCCAGA  600

seq1  ACACTCTTTTGGCCTCCACAGCACCTTCACACATGTGGCATGTATATGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTTGGCCTCCACAGCACCTTCACACATGTGGCATGTATATGCC  650

seq1  AAACACACACACACAAACACACACACACACTTACTTTAATAAAAATTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACACACAAACACACACACACACTTACTTTAATAAAAATTCAA  700

seq1  AACTAAGCCTTTTTAAGAAGTAAACACTGGCTGGGTGATGGTGGCGCACG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCCTTTTTAAGAAGTAAACACTGGCTGGGTGATGGTGGCGCACG  750

seq1  CCTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCGAATTTCTGAGTTCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCGAATTTCTGAGTTCG  800

seq1  AGGCCACCCTGGTCTACAGAGTGAATTC  825
      ||||||||||||||||||||||||||||
seq2  AGGCCACCCTGGTCTACAGAGTGAATTC  828