BAC Information

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BAC

Clone NameB6Ng01-164D09
Chromosome13 (Build37)
Map Location 12,935,651 - 13,078,151
singlet/doubletdoublet
Overlap geneLOC100039999, LOC100039754
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
Downstream genePrl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164D09.bB6Ng01-164D09.g
ACCDH956595DH956596
length9201,205
definitionDH956595|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D09, 5' end.DH956596|Mus musculus domesticus DNA, BAC clone: B6Ng01-164D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,935,651 - 12,936,211)(13,076,960 - 13,078,151)
sequence
gaattcttgaaattctttagcaaatggatggaactagaaaatatcctgag
ggaggtatctcagtcccaaaagaacacacatggtatgcactcactaataa
gtagctattagcccaaaagctccaaatatcgaagatacaattcccagacc
acatgcaactcaagaaggaagaccaaagtgtctgtgtttcaatccttctt
agaaggggaataaaatactcacaggagcaaatatggagataaggccatcc
agagactgtcccatttggtgattcatcccatttagagttatgaaacccag
acggtattgtgcattccaaaaagtgcatgctgaaaggagcctgatattgc
tgtcagccgagagacccaaccagagcttacaaatgcagaggtggatgctc
gcagccaaccattgcttacacatacaggggcagatgctcacagccactga
ttggtgtgagcatggggttcccagtagtggagttagagaaaggactgaat
gagttcaaggggtttgtcaccctataggaagaaggacaatatcaaccaac
cagacccccagagcttccagggagtaaactatcaaacaaggagtacacat
ggctccagctgcatatgtagcagaggatggacttgtcaggcatcaatggg
aggagaggtccttccttagtcctatgaagactcaatagatgtcccactgt
agggaaatagagggcgggaggtgaaaatggttgggtgggtagagaaacac
cctcatagaagaagggggtggaggatggcacaagcattttgtaggagagg
gaaccaggaaatgcataacacttgaaatgtaaattaagaaaatattcata
aaagaaatgaaaaaaaaagatattacatgggcttgggttttgggtagagt
tcgtaaaggaatgccagcta
gaattcaacacaaaagaaaataaaaggatcaggttctaacaaagcatgca
aataccttaatacttgttccacttctttcatagagcaagcaaatttgggt
gcagcaagggagataggagacactttctttcatacctcttcttaataaaa
taaagtagttagtattccttatcaacgtgaagtaatacaaaatgggacca
gtcttcctagtcttgccacagaaattggcagcacattacccagtgcactg
aatgttcaggcatgaaatttacaggatatattaaacttgcctcaaagttg
agaatgagcaatgtattgcagagtcagaatctctgaaaggagactttcaa
agacaaagtgtgaacttgtagaggtaaagccaaaatggcaatgcctctgc
tagttggtgggaaatactctattttgaggggaaatttttctagagttctc
tttttttattgtatcctggtctatttttattatcagagtaatatcaattc
agataaatgagtctgttagtattccctttctagaaaattttaaatattta
aattaaatgttgaggaagtcaaataatttgtaatttttaattactaggga
atagaaacttacaatgcataaaatatttatcttatcaacttatcctgtaa
aaattaacgggtttcttgacttcctattgtaacctaatctaaccatacat
ttataaccccatttcttagttgacaaaatcaggatattttgagggaaaaa
aatcttctttcctaacacatgctgtctttatctcactgtcctgcatttga
tctggttcttcacttaccacacatgtgtctaatcttagaataaaggtaac
cacacagaaacacgggatactttcaaccacttagtgcattcgggtgtacc
acttccactcatatataatattttctgcaaatttgcatctgcaccattta
ctgtttttatagacgctattggctgcctgtgtctgtgagatagtagtagt
aataaaataataatgaaagggtttcaaagaattgatttaaacatcaatag
ccctgggaacattacccctttagtatttgggggcagaatttacattggga
agaattttctataacctccactcacgctcaaaatacaaattttggttcgc
tcaggagggacccacagatgtatatgtctaaacaaaaccattgtctaggc
ttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12935651_12936211
seq2: B6Ng01-164D09.b_412_968

seq1  ACCCAACCAGAGCTTACAAATGCAGAGGTGGATGCTCGCAGCCAACCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCAGAGCTTACAAATGCAGAGGTGGATGCTCGCAGCCAACCATT  50

seq1  GCTTACACATACAGGGGCAGATGCTCACAGCCACTGATTGGTGTGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACATACAGGGGCAGATGCTCACAGCCACTGATTGGTGTGAGCAT  100

seq1  GGGGTTCCCAGTAGTGGAGTTAGAGAAAGGACTGAATGAGTTCAAGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCCAGTAGTGGAGTTAGAGAAAGGACTGAATGAGTTCAAGGGGT  150

seq1  TTGTCACCCTATAGGAAGAAGGACAATATCAACCAACCAGACCCCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCCTATAGGAAGAAGGACAATATCAACCAACCAGACCCCCAGAG  200

seq1  CTTCCAGGGAGTAAACTATCAAACAAGGAGTACACATGGCTCCAGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGAGTAAACTATCAAACAAGGAGTACACATGGCTCCAGCTGCA  250

seq1  TATGTAGCAGAGGATGGACTTGTCAGGCATCAATGGGAGGAGAGGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAGAGGATGGACTTGTCAGGCATCAATGGGAGGAGAGGTCCTT  300

seq1  CCTTAGTCCTATGAAGACTCAATAGATGTCCCACTGTAGGGAAATAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCCTATGAAGACTCAATAGATGTCCCACTGTAGGGAAATAGAGG  350

seq1  GCGGGAGGTGAAAATGGTTGGGTGGGTAGAGAAACACCCTCATAGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGGTGAAAATGGTTGGGTGGGTAGAGAAACACCCTCATAGAAGAA  400

seq1  GGGGGTGGAGGATGGCACAAGCATTTTGTAGGAGAGGGAACCAGGAAAGT  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGGGTGGAGGATGGCACAAGCATTTTGTAGGAGAGGGAACCAGGAAA-T  449

seq1  GCATAACACTTGAAATGTAAATAAAGAAAATATTCAATAAAAGAAATGAA  500
      |||||||||||||||||||||| |||||||||||| |||||||||||| |
seq2  GCATAACACTTGAAATGTAAATTAAGAAAATATTC-ATAAAAGAAATG-A  497

seq1  AAAAAAAAGATATTTACATGGGCTTTGGTATTTGGTAGAGTTCGTAAAGT  550
      |||||||||||| |||||||||||| ||| || |||||||||||||||| 
seq2  AAAAAAAAGATA-TTACATGGGCTTGGGTTTTGGGTAGAGTTCGTAAAGG  546

seq1  AATGCCAGCAA  561
      ||||||||| |
seq2  AATGCCAGCTA  557

seq1: chr13_13076960_13078151
seq2: B6Ng01-164D09.g_67_1271 (reverse)

seq1  ACCAAGACCTAGACAAAGGTGTTTGTTTTAGAC--ATACATCTGTTGGT-  47
      |||||| ||||||||| ||| |||| |||||||  |||||||||| ||| 
seq2  ACCAAG-CCTAGACAATGGT-TTTG-TTTAGACATATACATCTGTGGGTC  47

seq1  CCTCCTGA-CGAAC--AAAATTGTATTTTGAGC-TGAGTGGAG--TAATG  91
      |||||||| |||||  ||| ||||||||||||| |||||||||  ||  |
seq2  CCTCCTGAGCGAACCAAAATTTGTATTTTGAGCGTGAGTGGAGGTTATAG  97

seq1  AATA-TCTT-CCAATGTACA-TCTGCCCCCAAATACT-TAGGGGTATTGT  137
      || | |||| |||||||| | ||||||||||||||||  ||||||| |||
seq2  AAAATTCTTCCCAATGTAAATTCTGCCCCCAAATACTAAAGGGGTAATGT  147

seq1  --CCAGGGCTATTGATGTTTAAATCAA-TCTTTGAGAACCTTTCATTA-T  183
        ||||||||||||||||||||||||| ||||||| | |||||||||| |
seq2  TCCCAGGGCTATTGATGTTTAAATCAATTCTTTGAAACCCTTTCATTATT  197

seq1  ATTTTATTACTACCTACTATCTCACAGACACAGGCAGCCAATAGCGTCTA  233
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTACTA-CTACTATCTCACAGACACAGGCAGCCAATAGCGTCTA  246

seq1  T-AAAACAGTAAATGGTGCAGATGCAAATTTGCAGAAAAATATTATATAT  282
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAAACAGTAAATGGTGCAGATGCAAATTTGCAG-AAAATATTATATAT  295

seq1  GAGTGGAAGTGGTACACCCGAATGCACTAAGTGGTTGAAAGTATCCCGTG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGTGGTACACCCGAATGCACTAAGTGGTTGAAAGTATCCCGTG  345

seq1  TTTCTGTGTGGTTACCTTTATTCTAAGATTAGACACATGTGTGGTAAGTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTGGTTACCTTTATTCTAAGATTAGACACATGTGTGGTAAGTG  395

seq1  AAGAACCAGATCAAATGCAGGACAGTGAGATAAAGACAGCATGTGTTAGG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGATCAAATGCAGGACAGTGAGATAAAGACAGCATGTGTTAGG  445

seq1  AAAGAAGATTTTTTTCCCTCAAAATATCCTGATTTTGTCAACTAAGAAAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATTTTTTTCCCTCAAAATATCCTGATTTTGTCAACTAAGAAAT  495

seq1  GGGGTTATAAATGTATGGTTAGATTAGGTTAAAATAGGAAGTCAAGAAAC  532
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGGTTATAAATGTATGGTTAGATTAGGTTACAATAGGAAGTCAAGAAAC  545

seq1  CCGTTAATTTTTACAGGATAAGTTGATAAGATAAATATTTTATGCATTGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAATTTTTACAGGATAAGTTGATAAGATAAATATTTTATGCATTGT  595

seq1  AAGTTTCTATTCCCTAATAATTAAAAATTACAAATTATTTGACTTCCTCA  632
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTTTCTATTCCCTAGTAATTAAAAATTACAAATTATTTGACTTCCTCA  645

seq1  ACATTTAATTTAAATATTTAAAATTTTCTAGAAAGGGAATACTAACAGAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATTTAAATATTTAAAATTTTCTAGAAAGGGAATACTAACAGAC  695

seq1  TCATTTATCTGAATTGATATTACTCTGATAATAAAAATAGACCAGGATAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATCTGAATTGATATTACTCTGATAATAAAAATAGACCAGGATAC  745

seq1  AATAAAAAAAGAGAACTCTAGAAAAATTTCCCCTCAAAATAGAGTATTTC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAGAGAACTCTAGAAAAATTTCCCCTCAAAATAGAGTATTTC  795

seq1  CCACCAACTAGCAGAGGCATTGCCATTTTGGCTTTACCTCTACAAGTTCA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACTAGCAGAGGCATTGCCATTTTGGCTTTACCTCTACAAGTTCA  845

seq1  CACTTTGTCTTTGAAAGTCTCCTTTCAGAGATTCTGACTCTGCAATACAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTCTTTGAAAGTCTCCTTTCAGAGATTCTGACTCTGCAATACAT  895

seq1  TGCTCATTCTCAACTTTGAGGCAAGTTTAATATATCCTGTAAATTTCATG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCTCAACTTTGAGGCAAGTTTAATATATCCTGTAAATTTCATG  945

seq1  CCTGAACATTCAGTGCACTGGGTAATGTGCTGCCAATTTCTGTGGCAAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATTCAGTGCACTGGGTAATGTGCTGCCAATTTCTGTGGCAAGA  995

seq1  CTAGGAAGACTGGTCCCATTTTGTATTACTTCACGTTGATAAGGAATACT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGACTGGTCCCATTTTGTATTACTTCACGTTGATAAGGAATACT  1045

seq1  AACTACTTTATTTTATTAAGAAGAGGTATGAAAGAAAGTGTCTCCTATCT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTATTTTATTAAGAAGAGGTATGAAAGAAAGTGTCTCCTATCT  1095

seq1  CCCTTGCTGCACCCAAATTTGCTTGCTCTATGAAAGAAGTGGAACAAGTA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTGCACCCAAATTTGCTTGCTCTATGAAAGAAGTGGAACAAGTA  1145

seq1  TTAAGGTATTTGCATGCTTTGTTAGAACCTGATCCTTTTATTTTCTTTTG  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTATTTGCATGCTTTGTTAGAACCTGATCCTTTTATTTTCTTTTG  1195

seq1  TGTTGAATTC  1192
      ||||||||||
seq2  TGTTGAATTC  1205