BAC Information

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BAC

Clone NameB6Ng01-165G24
Chromosome13 (Build37)
Map Location 23,123,543 - 23,217,017
singlet/doubletdoublet
Overlap geneV1rh5, V1ri2, V1ri10, V1rh14, LOC100040639
Upstream geneHist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6
Downstream geneV1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165G24.bB6Ng01-165G24.g
ACCDH957495DH957496
length1,1591,054
definitionDH957495|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G24, 5' end.DH957496|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,215,858 - 23,217,017)(23,123,543 - 23,124,592)
sequence
gaattcccttggcagaaccccttgtcccttggcagaaccccttagttatg
caaacttgtactttccctgccccgctctccccccttgagtttttcctata
taagcctgtgaaaaatttggctcgaggtcgattctcctctacaccatact
aggtgcatgagtttcgaccccagagctctggtctatgtgctttcttgctg
ttgctttattaaatcttgccttcaacattttgagttcggtctcagtgtct
tcttgggtccgcggctgtcccgaggcttgagtgagggtctcccttcgggg
gtctttcaatctcacagcttatatcatctaggaagtttctcaaatcaaaa
gctgctattgcctttgtcagtccttttgtaagaagaattatgatgtctgt
aaaagccaagtgagtgagaataaggtatatgggtgtcttctcagggtttc
cccaccaactgaacatataatttacaaaaccagacatgttacccagaatc
ccaaccacattcatggagggcaaatccattttgtttataaactttcaaat
aatttttacttcctaggtagaaaaccatgtatgcaggatggaaagatctt
ttccagaaagcaaaagtaacgctagacatggttctgaacagcacatctgc
ataatagcatttcctgctgctcaagagacagtatatatgtaatgttgcag
gtgaggtccctgaatctccccaattttctgcagactctgagttattgtgt
gtgcactgagaggtgagtttttaacctttattcaaaaattttaaaggaga
tatgttttatatttacatttgacttgttcaagtgaatgcatgtgtgtgtg
tctgtctgtctgtctgtgtgcctaaattattcttgttacagtcagaatag
gtgaattgcactccaggttcttccaaccaagttatctccctctgtttctt
actgtatttttatcacattggctatccaatcctcaaagtttcaggcctct
ttctcattttttatttttgattcagtggtaacaatttctaagatttgcat
tttgcttacaaagctttttaattcccattctacatctttattttaaattt
tttacctggacatctgtggttactctattagtttcactagtattttttaa
acatattcc
gaattccttatttgaaacttttccttctgtatccatcctaatattctttg
gatttcatcacatactgctatgtatacttgtcagtttagttactgcatac
ctgtgggtgtgtatacagataaatcactagagtaacagttaacgctactg
tattgataagtcctgctgtaaggatccaggctgtgaacaaactgcatcct
gaaacagctcatctcactgctaagcagcacacaagcaatacagtctttgc
ttttgtttgttctttttggaaaaccagagtggatgattgtaaccttccca
agacttgtgaattagacacagatagcatataacccatctatctaaacaca
aggccagcccatcttttagtacttcccattatgagttagggtgagttgag
agcagggttgtttacaggttcctatcactaactgaatacttcatttttat
gttaaatctgttaatgttgctgatgtccttggtattaatgtccagagcat
tattcactgtgttcagatatttaggatgatgtgatttgctgtagaggagc
agatgaaaggcaataactgagatttagagtcatgaagccacctggacaaa
aacctaggggaaaaaccaggttcacacataccaagtgtgcaatcaccagg
gtatagacatttaaataatcttgtgagcttgacaggaaggaaagcaagga
acagaggcattccaagtactcagaacacacaaacccatggagacactgag
gcaatccagattgctcttattctaagaaaggtgcccaaaacttgctaaaa
ttatccaaggtatgagaatggagctccgcaacatgaataataacatattg
ctgatgtctaagacatactgctgatctctaagttctggaatcagcttgga
ctaatgtagatcaagcagcctgcctgacaaacagatttgaaaagaaacag
gagagaagcatgcttgtaaagcaaactgacactgctgcttacaaggcccc
cacgaggcaaatgccccaccattgacctttttagagggggaagtgttccc
tgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23215858_23217017
seq2: B6Ng01-165G24.b_46_1204 (reverse)

seq1  GGAATATGTTTAAAAAATAACTAGTGAAAATTTATATAGAGTAAAACCAC  50
      |||||||||||||||||| |||||||||| |    |||||||  ||||||
seq2  GGAATATGTTTAAAAAAT-ACTAGTGAAACT---AATAGAGT--AACCAC  44

seq1  AGAATGGTCAGTATAAAAATTTAAA--TAAGATGTAGAAATTGGAATTAT  98
      || |||  |||   |||||||||||   ||||||||| ||| ||||||| 
seq2  AG-ATGTCCAGGTAAAAAATTTAAAATAAAGATGTAG-AATGGGAATTAA  92

seq1  AAAGCTTTGT-AGCAAAATGCAAATC-TAGAAATTGTTACACCTG-ATCA  145
      |||||||||| ||||||||||||||| |||||||||||||  ||| ||||
seq2  AAAGCTTTGTAAGCAAAATGCAAATCTTAGAAATTGTTACCACTGAATCA  142

seq1  AAA--TAAAAATGAGAAAGAGGCCTGAAACTTTGAGGATTGGATAGCCAA  193
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATGAGAAAGAGGCCTGAAACTTTGAGGATTGGATAGCCAA  192

seq1  TGTGAT-AAAATACAGTAAGAAACAGAGGGAGATAACTTGGTTGGAAGAA  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAAAATACAGTAAGAAACAGAGGGAGATAACTTGGTTGGAAGAA  242

seq1  CCTGGAGTGCAATTCACCTATTCTGACTGTTAACAAGAATAATTTAGGCA  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGGAGTGCAATTCACCTATTCTGACTG-TAACAAGAATAATTTAGGCA  291

seq1  CACAGACAGACAGACAGACACACACACATGCATTCACTTGAACAAGTCAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGACAGACAGACACACACACATGCATTCACTTGAACAAGTCAA  341

seq1  ATGTAAATATAAAACATATCTCCTTTAAAATTTTTGAATAAAGGTTAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATAAAACATATCTCCTTTAAAATTTTTGAATAAAGGTTAAAA  391

seq1  ACTCACCTCTCAGTGCACACACAATAACTCAGAGTCTGCAGAAAATTGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTCTCAGTGCACACACAATAACTCAGAGTCTGCAGAAAATTGGG  441

seq1  GAGATTCAGGGACCTCACCTGCAACATTACATATATACTGTCTCTTGAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCAGGGACCTCACCTGCAACATTACATATATACTGTCTCTTGAGC  491

seq1  AGCAGGAAATGCTATTATGCAGATGTGCTGTTCAGAACCATGTCTAGCGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAATGCTATTATGCAGATGTGCTGTTCAGAACCATGTCTAGCGT  541

seq1  TACTTTTGCTTTCTGGAAAAGATCTTTCCATCCTGCATACATGGTTTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCTTTCTGGAAAAGATCTTTCCATCCTGCATACATGGTTTTCT  591

seq1  ACCTAGGAAGTAAAAATTATTTGAAAGTTTATAAACAAAATGGATTTGCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAAGTAAAAATTATTTGAAAGTTTATAAACAAAATGGATTTGCC  641

seq1  CTCCATGAATGTGGTTGGGATTCTGGGTAACATGTCTGGTTTTGTAAATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAATGTGGTTGGGATTCTGGGTAACATGTCTGGTTTTGTAAATT  691

seq1  ATATGTTCAGTTGGTGGGGAAACCCTGAGAAGACACCCATATACCTTATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCAGTTGGTGGGGAAACCCTGAGAAGACACCCATATACCTTATT  741

seq1  CTCACTCACTTGGCTTTTACAGACATCATAATTCTTCTTACAAAAGGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTTGGCTTTTACAGACATCATAATTCTTCTTACAAAAGGACT  791

seq1  GACAAAGGCAATAGCAGCTTTTGATTTGAGAAACTTCCTAGATGATATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCAATAGCAGCTTTTGATTTGAGAAACTTCCTAGATGATATAA  841

seq1  GCTGTGAGATTGAAAGACCCCCGAAGGGAGACCCTCACTCAAGCCTCGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGATTGAAAGACCCCCGAAGGGAGACCCTCACTCAAGCCTCGGG  891

seq1  ACAGCCGCGGACCCAAGAAGACACTGAGACCGAACTCAAAATGTTGAAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGCGGACCCAAGAAGACACTGAGACCGAACTCAAAATGTTGAAGG  941

seq1  CAAGATTTAATAAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCTGGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAATAAAGCAACAGCAAGAAAGCACATAGACCAGAGCTCTGGG  991

seq1  GTCGAAACTCATGCACCTAGTATGGTGTAGAGGAGAATCGACCTCGAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAACTCATGCACCTAGTATGGTGTAGAGGAGAATCGACCTCGAGCC  1041

seq1  AAATTTTTCACAGGCTTATATAGGAAAAACTCAAGGGGGGAGAGCGGGGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCACAGGCTTATATAGGAAAAACTCAAGGGGGGAGAGCGGGGC  1091

seq1  AGGGAAAGTACAAGTTTGCATAACTAAGGGGTTCTGCCAAGGGACAAGGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTACAAGTTTGCATAACTAAGGGGTTCTGCCAAGGGACAAGGG  1141

seq1  GTTCTGCCAAGGGAATTC  1160
      ||||||||||||||||||
seq2  GTTCTGCCAAGGGAATTC  1159

seq1: chr13_23123543_23124592
seq2: B6Ng01-165G24.g_69_1122

seq1  GAATTCCTTATTTGAAACTTTTCCTTCTGTATCCATCCTAATATTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTGAAACTTTTCCTTCTGTATCCATCCTAATATTCTTTG  50

seq1  GATTTCATCACATACTGCTATGTATACTTGTCAGTTTAGTTACTGCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATCACATACTGCTATGTATACTTGTCAGTTTAGTTACTGCATAC  100

seq1  CTGTGGGTGTGTATACAGATAAATCACTAGAGTAACAGTTAACGCTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGTGTATACAGATAAATCACTAGAGTAACAGTTAACGCTACTG  150

seq1  TATTGATAAGTCCTGCTGTAAGGATCCAGGCTGTGAACAAACTGCATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAAGTCCTGCTGTAAGGATCCAGGCTGTGAACAAACTGCATCCT  200

seq1  GAAACAGCTCATCTCACTGCTAAGCAGCACACAAGCAATACAGTCTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTCATCTCACTGCTAAGCAGCACACAAGCAATACAGTCTTTGC  250

seq1  TTTTGTTTGTTCTTTTTGGAAAACCAGAGTGGATGATTGTAACCTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTCTTTTTGGAAAACCAGAGTGGATGATTGTAACCTTCCCA  300

seq1  AGACTTGTGAATTAGACACAGATAGCATATAACCCATCTATCTAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTGAATTAGACACAGATAGCATATAACCCATCTATCTAAACACA  350

seq1  AGGCCAGCCCATCTTTTAGTACTTCCCATTATGAGTTAGGGTGAGTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCCATCTTTTAGTACTTCCCATTATGAGTTAGGGTGAGTTGAG  400

seq1  AGCAGGGTTGTTTACAGGTTCCTATCACTAACTGAATACTTCATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTTGTTTACAGGTTCCTATCACTAACTGAATACTTCATTTTTAT  450

seq1  GTTAAATCTGTTAATGTTGCTGATGTCCTTGGTATTAATGTCCAGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCTGTTAATGTTGCTGATGTCCTTGGTATTAATGTCCAGAGCAT  500

seq1  TATTCACTGTGTTCAGATATTTAGGATGATGTGATTTGCTGTAGAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTGTGTTCAGATATTTAGGATGATGTGATTTGCTGTAGAGGAGC  550

seq1  AGATGAAAGGCAATAACTGAGATTTAGAGTCATGAAGCCACCTGGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGGCAATAACTGAGATTTAGAGTCATGAAGCCACCTGGACAAA  600

seq1  AACCTAGGGGAAAAACCAGGTTCACACATACCAAGTGTGCAATCACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGGGAAAAACCAGGTTCACACATACCAAGTGTGCAATCACCAGG  650

seq1  GTATAGACATTTAAATAATCTTGTGAGCTTGACAGGAAGGAAAGCAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGACATTTAAATAATCTTGTGAGCTTGACAGGAAGGAAAGCAAGGA  700

seq1  ACAGAGGCATTCCAAGTACTCAGAACACACAAACCCATGGAGACACTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCATTCCAAGTACTCAGAACACACAAACCCATGGAGACACTGAG  750

seq1  GCAATCCAGATTGCTCTTATTCTAAGAAAGGTGCCCAAAACTTGCTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAGATTGCTCTTATTCTAAGAAAGGTGCCCAAAACTTGCTAAAA  800

seq1  TTATCCAAGGTATGAGAATGGAGCTCCGCAACATGAATAATAACATATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAAGGTATGAGAATGGAGCTCCGCAACATGAATAATAACATATTG  850

seq1  CTGATGTCTAAGACATACTGCTGATCTCTAAGTTCTGGAATCAGCTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTAAGACATACTGCTGATCTCTAAGTTCTGGAATCAGCTTGGA  900

seq1  CTAATGTAGATCAAAGCAGCCTGCCTGACAAACAGATTGGAAAAGAAACA  950
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CTAATGTAGATC-AAGCAGCCTGCCTGACAAACAGATTTGAAAAGAAACA  949

seq1  GGAGGAGAAGCAGGC-TGTAAAGCAAACTGACAACTGCTGCTTACAAGGC  999
      ||| |||||||| || |||||||||||||||| |||||||||||||||||
seq2  GGA-GAGAAGCATGCTTGTAAAGCAAACTGAC-ACTGCTGCTTACAAGGC  997

seq1  CCCACAGAGGCAAATG-CCCACCA-TGACC-TTTTAGAGGGG--AGTG-T  1043
      |||   |||||||||| ||||||| ||||| |||||||||||  |||| |
seq2  CCCCACGAGGCAAATGCCCCACCATTGACCTTTTTAGAGGGGGAAGTGTT  1047

seq1  CCCTGCC  1050
      |||||||
seq2  CCCTGCC  1054