BAC Information

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BAC

Clone NameB6Ng01-166D04
Chromosome13 (Build37)
Map Location 82,516,888 - 82,518,021
singlet/doubletsinglet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166D04.bB6Ng01-166D04.g
ACCDH958042DH958043
length1,1671,112
definitionDH958042|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D04, 5' end.DH958043|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgcctaagatcaaaatttcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattattggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtattaccggaagatccagcaatacctctcctggac
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggatcatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacactattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggaacacatatgaactaacagtaccccggagctcttgactctag
ctgcatatgtatcaaagaatgcctagtagccatcactgaaggaagcccat
gactgcaacttaatgcccagtacaggaacgccaggccaaaaaggggaagt
gggtgggataagggaat
gaattctgcctcttacaactttggactaagtaaaatatattttttctcta
gattatgtttttcaccttcagaaatgatgaattccaacataattccacct
taaattttgccttattttctatctagataataaaataaatattttagtac
actgtttcataaagaaaattggtttgttttgggccatggttctggtaaaa
gggtgagaggtcacatttgggtgtcttagattccttgtgcaaacaattcc
ataacaaaagataatacaacttatttgttacttttgtatctagctggtct
ctctgtgttcttgcaaagacaaactgattcaaaagtgaggctacttgtaa
gtgaccttgtctaattcttactactttccaaagttttcacctctagtcct
tagcctgattaggtttccaccatgataactatttgaaagggtgatggaat
ttcagcactcaaagccttaggagatttcaaatctctacaagcatagactt
tacacttgttagacattttgcagtaggtagattaagttattcaattataa
aatttatattattttctattatttcataaattgtcagttatcatgggatc
aatatgttatagtgagtaggcagtaagaatccagtatttttgtctttcag
aaataaataatcagtggttcttactttttgtcattgtagttttgtcattg
tattttatcattgttaagtattacctttgaaataagttaagctttttttg
tatgtgtaggtttgtgccaaactattttgattacccttccatggaaatat
aaccctttcttaatttctttctttgttgttgtttgtttgttgtttgtttt
aaagcagacttaattcatttatttttcttgtataaaacccttatgtggta
gccacagctgaagcctggtcctctgaacagagactctggtgtggttttca
caagataatcagtgaattcctgataagagactggtgagcagcctcttcca
gagtcagagtcagtagctgcagtctggagaatgccatcaatggttgcttg
caagttacccaggatggcgtgcaagcctctggctgaagtagcgtcatcta
acggcatcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82516888_82518021
seq2: B6Ng01-166D04.g_66_1177

seq1  GAATTCTGCCTCTTACAACTTTGGACTAAGTAAAATATATTTTTTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCTTACAACTTTGGACTAAGTAAAATATATTTTTTCTCTA  50

seq1  GATTATGTTTTTCACCTTCAGAAATGATGAATTCCAACATAATTCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTTTTCACCTTCAGAAATGATGAATTCCAACATAATTCCACCT  100

seq1  TAAATTTTGCCTTATTTTCTATCTAGATAATAAAATAAATATTTTAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGCCTTATTTTCTATCTAGATAATAAAATAAATATTTTAGTAC  150

seq1  ACTGTTTCATAAAGAAAATTGGTTTGTTTTGGGCCATGGTTCTGGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCATAAAGAAAATTGGTTTGTTTTGGGCCATGGTTCTGGTAAAA  200

seq1  GGGTGAGAGGTCACATTTGGGTGTCTTAGATTCCTTGTGCAAACAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAGGTCACATTTGGGTGTCTTAGATTCCTTGTGCAAACAATTCC  250

seq1  ATAACAAAAGATAATACAACTTATTTGTTACTTTTGTATCTAGCTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAGATAATACAACTTATTTGTTACTTTTGTATCTAGCTGGTCT  300

seq1  CTCTGTGTTCTTGCAAAGACAAACTGATTCAAAAGTGAGGCTACTTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTCTTGCAAAGACAAACTGATTCAAAAGTGAGGCTACTTGTAA  350

seq1  GTGACCTTGTCTAATTCTTACTACTTTCCAAAGTTTTCACCTCTAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGTCTAATTCTTACTACTTTCCAAAGTTTTCACCTCTAGTCCT  400

seq1  TAGCCTGATTAGGTTTCCACCATGATAACTATTTGAAAGGGTGATGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGATTAGGTTTCCACCATGATAACTATTTGAAAGGGTGATGGAAT  450

seq1  TTCAGCACTCAAAGCCTTAGGAGATTTCAAATCTCTACAAGCATAGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACTCAAAGCCTTAGGAGATTTCAAATCTCTACAAGCATAGACTT  500

seq1  TACACTTGTTAGACATTTTGCAGTAGGTAGATTAAGTTATTCAATTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGTTAGACATTTTGCAGTAGGTAGATTAAGTTATTCAATTATAA  550

seq1  AATTTATATTATTTTCTATTATTTCATAAATTGTCAGTTATCATGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATTATTTTCTATTATTTCATAAATTGTCAGTTATCATGGGATC  600

seq1  AATATGTTATAGTGAGTAGGCAGTAAGAATCCAGTATTTTTGTCTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTATAGTGAGTAGGCAGTAAGAATCCAGTATTTTTGTCTTTCAG  650

seq1  AAATAAATAATCAGTGGTTCTTACTTTTTGTCATTGTAGTTTTGTCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATCAGTGGTTCTTACTTTTTGTCATTGTAGTTTTGTCATTG  700

seq1  TATTTTATCATTGTTAAGTATTACCTTTGAAATAAGTTAAGCTTTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCATTGTTAAGTATTACCTTTGAAATAAGTTAAGCTTTTTTTG  750

seq1  TATGTGTAGGTTTGTGCCAAACTATTTTGATTACCCTTCCATGGAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAGGTTTGTGCCAAACTATTTTGATTACCCTTCCATGGAAATAT  800

seq1  AACCCTTTCTTAATTTCTTTCTTTGTTGTTGTTTGTTTGTTTGTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  AACCCTTTCTTAATTTCTTTCTTTGTTGTTGTTTGTTTG-TTGTTTG-TT  848

seq1  TTAAAGCAGACTTAATTCATTTATTTTTCTTGTATAAAAACCCTTATGTG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAAAGCAGACTTAATTCATTTATTTTTCTTGTAT-AAAACCCTTATGTG  897

seq1  GTAGCCACAGCTGAAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGTT  950
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GTAGCCACAGCTGAAGCCT-GGTCCTCTGAACAGAGACTCTGGTGTGG-T  945

seq1  TTTCACAAGATAATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGGCAG  1000
      ||||||||||||||||||||||||||||||| ||||| ||||||  ||||
seq2  TTTCACAAGATAATCAGTGAATTCCTGATAA-GAGAC-TGGTGA--GCAG  991

seq1  CCTCTTTCCAGAGGTCAGGAGTCAGGTAGCTGCAAGTCTTGGAG-ATGCC  1049
      |||| ||||||| |||| |||||| |||||||| |||| ||||| |||||
seq2  CCTC-TTCCAGA-GTCA-GAGTCA-GTAGCTGC-AGTC-TGGAGAATGCC  1035

seq1  ATCAATGGTGGCCTTGGCAAAGTTACCCAGGATGGCGTGC-AGCCTCTGG  1098
      ||||||||| | ||||   ||||||||||||||||||||| |||||||||
seq2  ATCAATGGTTG-CTTG--CAAGTTACCCAGGATGGCGTGCAAGCCTCTGG  1082

seq1  CTGAAGTGTAGCAGTCATCTATACCGGCCATCATCA  1134
      |||||  ||||| |||||||| ||  | ||||||||
seq2  CTGAA--GTAGC-GTCATCTA-AC--GGCATCATCA  1112