BAC Information

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BAC

Clone NameB6Ng01-166O19
Chromosome13 (Build37)
Map Location 90,279,132 - 90,280,237
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O19.bB6Ng01-166O19.g
ACCDH958562DH958563
length1,1901,102
definitionDH958562|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O19, 5' end.DH958563|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattatggggagaattttattaagagagagggtgaagaatcaagt
gttgaggaattataatgtgtaaataataaatagaagtgaaggatgtagca
actaacaattaaaaggagggaacaaaagaaggacaagaagaatggtgtgt
cctagaaagcaatttgagagacgtcttgggtccctgactccactgagact
actcttcacaggcgagagtgtggactacagaagctaacagcttctgggac
agtcagtagccacagagcttctgaggcagcccccttttcgagctccagac
atccaggcaacttccctgccagaggataggtgtccgcccgggagggcttc
ccctgagcatctgtgggagacatcttggatcccggactccaccagactag
tctgcacaggtgagagtgtggattacagaagctaacagcttctgggacag
gtccggtttcaggccttcatcttctgccaggaggcaagtctgaatgccag
atatctgtgcaccttctctgaaagagaagagcctgcctgcagagagtgct
ctgaccactgaaactcaggagagagctagtctccctggtctgctggtaga
gaataacagaatcacgagaggaacaagctctaaccagagacaactataac
aactgactccagagtttaccagatggaaaaaggcagatgtaagaatctta
ctaacaaaaaccaagaccactcaccatcatcagaacccagtactcccacc
tcagccagtccagggcaccccaacacacccaaaaacctagacctggattt
aaaggcatatctcatgatgatggtagaagaaagacatcaagaaggacttt
aataactcacttaaagaaatacaggagaacactgctaaacaggtagaaga
ccataaagaagaagcacaaaaatcccttaaagaattgcaggaaaacacaa
cccaacagtgatggaattgaataaaccatccacactgaaaaagggaagta
gacccaataaagaaaacccaaagtggaggcacgctggaaatagataccct
agaaaaggaatctggaccatagaatgcgagccatcagccacagaatacat
gagatggaagagagatcctcgatgccgaaattccctaaaagaaactcggc
caacattcagaaaaataccaatggcaaagattcttaatct
gaattctttttttcaaagaaagtgaggttattattgcttaagacaaagct
agactaagccaagaaaggatttctcttaaaagttccacagcaattgatct
gaggacagtgaaagaggcattctttccaagtatggacacactaatgcaaa
acagttctggtgtatgagttgattcctctgcttctaatccagtaggacag
tgacctcattggatcctggcccctgttcagtaggtattgtcattcccttc
ctctggcaacaccagcactttctgcaggctgctgtctgtactgctgtagt
tatttccatgtctaggccatgactttggcctttgggtcttgaccatcacc
tttcaaatattctcactaactggagcttttgtctggtttggtctaaggaa
gaataaactacaaacttatggtttggtccatagtccataatttaagccaa
tacctatttagacttctgttgaatctttgcaacaaaatctaaaaaagaat
atgaactactcaaatacacatgcttaaagtcctaaggtaagcttgtatat
ggtatttcaacaccgtaatcttaagaaacaaaagttataagaaactgcag
cctgaactctcatcaattattcatatttcattaaacatatttaaattagt
attactactccatttaccacagggtcagtctttgttttgtgcatttggtg
ttttgactattacgtgacagaaggtatttcttttctggtccaatacattt
ggagttctgtaggcttcttgtatgtttatgggcatttctttctttaggtt
agggaagttttcttctataattttgttgaagatatttactgaccctttga
gttggtaatcttcactctcttcaatacctatcatccttaggtttggtctt
ctcattgtgtcctggatttcctggatgtttgggttaggagcttttgaatt
tgcattttcttgttcactgttgtatcaatgttttctatggaattttatgt
ccctgagaatctctctctatctctggtttttttatgtgatgccttgcatc
catgactcctgatctctttctaaggttttcttacttcaagggtgtctccc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90279132_90280237
seq2: B6Ng01-166O19.g_69_1170

seq1  GAATTCTTTTTTTCAAAGAAAGTGAGGTTATTATTGCTTAAGACAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTCAAAGAAAGTGAGGTTATTATTGCTTAAGACAAAGCT  50

seq1  AGACTAAGCCAAGAAAGGATTTCTCTTAAAAGTTCCACAGCAATTGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGCCAAGAAAGGATTTCTCTTAAAAGTTCCACAGCAATTGATCT  100

seq1  GAGGACAGTGAAAGAGGCATTCTTTCCAAGTATGGACACACTAATGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGTGAAAGAGGCATTCTTTCCAAGTATGGACACACTAATGCAAA  150

seq1  ACAGTTCTGGTGTATGAGTTGATTCCTCTGCTTCTAATCCAGTAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGGTGTATGAGTTGATTCCTCTGCTTCTAATCCAGTAGGACAG  200

seq1  TGACCTCATTGGATCCTGGCCCCTGTTCAGTAGGTATTGTCATTCCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTGGATCCTGGCCCCTGTTCAGTAGGTATTGTCATTCCCTTC  250

seq1  CTCTGGCAACACCAGCACTTTCTGCAGGCTGCTGTCTGTACTGCTGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAACACCAGCACTTTCTGCAGGCTGCTGTCTGTACTGCTGTAGT  300

seq1  TATTTCCATGTCTAGGCCATGACTTTGGCCTTTGGGTCTTGACCATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATGTCTAGGCCATGACTTTGGCCTTTGGGTCTTGACCATCACC  350

seq1  TTTCAAATATTCTCACTAACTGGAGCTTTTGTCTGGTTTGGTCTAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATATTCTCACTAACTGGAGCTTTTGTCTGGTTTGGTCTAAGGAA  400

seq1  GAATAAACTACAAACTTATGGTTTGGTCCATAGTCCATAATTTAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACTACAAACTTATGGTTTGGTCCATAGTCCATAATTTAAGCCAA  450

seq1  TACCTATTTAGACTTCTGTTGAATCTTTGCAACAAAATCTAAAAAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTTAGACTTCTGTTGAATCTTTGCAACAAAATCTAAAAAAGAAT  500

seq1  ATGAACTACTCAAATACACATGCTTAAAGTCCTAAGGTAAGCTTGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTACTCAAATACACATGCTTAAAGTCCTAAGGTAAGCTTGTATAT  550

seq1  GGTATTTCAACACCGTAATCTTAAGAAACAAAAGTTATAAGAAACTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCAACACCGTAATCTTAAGAAACAAAAGTTATAAGAAACTGCAG  600

seq1  CCTGAACTCTCATCAATTATTCATATTTCATTAAACATATTTAAATTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCTCATCAATTATTCATATTTCATTAAACATATTTAAATTAGT  650

seq1  ATTACTACTCCATTTACCACAGGGTCAGTCTTTGTTTTGTGCATTTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTACTCCATTTACCACAGGGTCAGTCTTTGTTTTGTGCATTTGGTG  700

seq1  TTTTGACTATTACGTGACAGAAGGTATTTCTTTTCTGGTCCAATACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTATTACGTGACAGAAGGTATTTCTTTTCTGGTCCAATACATTT  750

seq1  GGAGTTCTGTAGGCTTCTTGTATGTTTATGGGCATTTCTTTCTTTAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTGTAGGCTTCTTGTATGTTTATGGGCATTTCTTTCTTTAGGTT  800

seq1  AGGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTACTGACCCTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTACTGACCCTTTGA  850

seq1  GTTGGTAATCTTCACTCTCTTCAATACCTATCATCCTTAGGTTTGGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAATCTTCACTCTCTTCAATACCTATCATCCTTAGGTTTGGTCTT  900

seq1  CTCATTGTGTCCTGGATTTCCTGGATGTTTGGGTTAGGAGCTTTTTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CTCATTGTGTCCTGGATTTCCTGGATGTTTGGGTTAGGAGC-TTTTGAA-  948

seq1  TTTGCATTTTCTTTGTTCACTGTTGTATCAATGTTTTCTATGGAATTTTA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTC-TTGTTCACTGTTGTATCAATGTTTTCTATGGAATTTTA  997

seq1  TGTCCCTGAGATTCTCTCTTCTATCTCTGGTATTTTATTGGTGATG-CTT  1049
      ||||||||||| |||||| |||||||||||| |||| |  |||||| |||
seq2  TGTCCCTGAGAATCTCTC-TCTATCTCTGGT-TTTTTTATGTGATGCCTT  1045

seq1  GCATCCATGACTCCTGATCTCTTTCCTAGGTTTTCTATCTCCAGGGTTGT  1099
      |||||||||||||||||||||||||  |||||||||  || || || |||
seq2  GCATCCATGACTCCTGATCTCTTTCTAAGGTTTTCTTACTTCAAGGGTGT  1095

seq1  CTCCCTT  1106
      |||||||
seq2  CTCCCTT  1102