BAC Information

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BAC

Clone NameB6Ng01-167C24
Chromosome13 (Build37)
Map Location 81,770,006 - 81,921,149
singlet/doubletdoublet
Overlap geneGpr98, Lysmd3, Polr3g, 2900024O10Rik
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneCetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167C24.bB6Ng01-167C24.g
ACCDH958751DH958752
length1,2121,143
definitionDH958751|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C24, 5' end.DH958752|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,770,006 - 81,771,229)(81,919,980 - 81,921,149)
sequence
gaattcaacagcgtaaaactaaattattttcctaaatactgagaatttta
actaacactttgttcttatacctgatggcatcaagacttgatgctctcac
atagttagcctttgcctcactgtggacttggtatagtcagatttcgtgag
tctataggagattaaggtaatgttcctaatattcagcataatggacgtct
aaaagcactcagaaaagacccttgatctggttttcataactggggatttg
aagcagaaatcttgaaagttcccagcttcagtgtcactgtctgggaatta
ggatactgctctttagtttatgatgatgatatgtcaaataaggtctttat
aaaggacttcaaggagctcatgactaatgtctttgagtaagaattgaatt
gtacatattcatcatggaaataaggtggttcagttgttcaattttgcttg
gatgcatttgatatactcattgtttttttaacagatgcaaccttgagtga
tgtaatttttaactagactacatctttgcaatcacctagcacaaagagct
tgattttataagtgaagaaacaaaatcctgaagaacagtttcatgttcaa
agtcacttaagttgtggcagaagtgggatataattctccaacacatgcaa
tcgcatgcattttttttgtaataattcagaatgtatttgtaaatcagtag
gagtttactacttagcctaggaaatctcccagacataagtctggtacctc
tgccctgattaaatgtctactgtcttctttaatgtcctttctctttattt
ctttgctctagttctttggagagatgactcacaaagaaggaagctttggt
tcagggatggaagatggttgtaacactcagtgccaaatcacttaaggggt
attttggacttttcctgtcaagaagtaacatcttaattccaatttctaca
aatgtgcagcttatgaaggggtctgcagccccataggaggagtattatat
gaactaccagtaaccccagagctccctgggactaaatcaccaatcaagaa
aacacatggtgggactcatggcttcagctgcatatgtaacagaaaatggc
ctagtcggtcatcatgagggaagccttggtcctgtgaaaggttctatgcc
cagtataggatgcctatcagaccagaagttgagttgacctgggggacaca
ggggagggagga
gaattctttacattgtgaattgcaggccagccaggactagtagtagaccc
tgcctaaaatataaaaattaagtacttttactaacaagtttaaaaggaaa
ttaggccaagcagtggtggctcacgcctttaatctcagcacttgggaggc
agaggcaggtgaatttctgagttcgaggccagcctggtctacagagtgag
ttccagggcagccagggctacacagagaaaccttgtctcgaaaaaacaaa
caaacaaacaaaaaaaggaaattagattacgtcatatgtatactaaagaa
cactagtgaaaaaaaaaactactaaaattttaagattgtaaaaccaagcc
taagaagaaaagtattaaataaaggtgaaaataaaccatttacatggaga
tgtttgaaacaaaggacaaaataaactaaactagaaggaataaattactg
agaaataatataatgagattttttttaatggaactttgatagaattaaaa
agctggtaaaatattctcatttaatatgaagaattttcttgaaacacata
aatttcacattcttctaggaagtgaaataaagaagaaattattacttaat
actttaaaagaaagttttgcttaaaagtatttctcatacaagcctgatga
gggaagttgtattctcctgccttgcaaccccactggaaacccattgtgaa
aagagagaaccaacctcaaacaatggtcttctgacaccacacgcgtgcca
tggctgtggcccacatgcacacacacaataattattataaatttgatgct
tctaatacatagttaaatttaaattatttcaagaaaataaaagtaactaa
agtgaccaaagttggagaactggatttggtcaatatagacaaagtaatca
ataaattctgtttctacaactaaaacatatttgatccacttggattttgt
gcagttttttttagattcttgagctaatttccgtgctttaatcacgcatg
atattataattttttattttgtagcaaagtactagcaaaatctcagcatg
ctaaaactctgcggacctcaatcatggtcttagctgcttctcccacctct
ctgaaagccttaaggacacttgcctatccttgctgatttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81770006_81771229
seq2: B6Ng01-167C24.b_46_1257

seq1  GAATTCAACAGCGTAAAACTAAATTATTTTCCTAAATACTGAGAATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCGTAAAACTAAATTATTTTCCTAAATACTGAGAATTTTA  50

seq1  ACTAACACTTTGTTCTTATACCTGATGGCATCAAGACTTGATGCTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACTTTGTTCTTATACCTGATGGCATCAAGACTTGATGCTCTCAC  100

seq1  ATAGTTAGCCTTTGCCTCACTGTGGACTTGGTATAGTCAGATTTCGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGCCTTTGCCTCACTGTGGACTTGGTATAGTCAGATTTCGTGAG  150

seq1  TCTATAGGAGATTAAGGTAATGTTCCTAATATTCAGCATAATGGACGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGAGATTAAGGTAATGTTCCTAATATTCAGCATAATGGACGTCT  200

seq1  AAAAGCACTCAGAAAAGACCCTTGATCTGGTTTTCATAACTGGGGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTCAGAAAAGACCCTTGATCTGGTTTTCATAACTGGGGATTTG  250

seq1  AAGCAGAAATCTTGAAAGTTCCCAGCTTCAGTGTCACTGTCTGGGAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAATCTTGAAAGTTCCCAGCTTCAGTGTCACTGTCTGGGAATTA  300

seq1  GGATACTGCTCTTTAGTTTATGATGATGATATGTCAAATAAGGTCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGCTCTTTAGTTTATGATGATGATATGTCAAATAAGGTCTTTAT  350

seq1  AAAGGACTTCAAGGAGCTCATGACTAATGTCTTTGAGTAAGAATTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTCAAGGAGCTCATGACTAATGTCTTTGAGTAAGAATTGAATT  400

seq1  GTACATATTCATCATGGAAATAAGGTGGTTCAGTTGTTCAATTTTGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATTCATCATGGAAATAAGGTGGTTCAGTTGTTCAATTTTGCTTG  450

seq1  GATGCATTTGATATACTCATTGTTTTTTTAACAGATGCAACCTTGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTGATATACTCATTGTTTTTTTAACAGATGCAACCTTGAGTGA  500

seq1  TGTAATTTTTAACTAGACTACATCTTTGCAATCACCTAGCACAAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTTAACTAGACTACATCTTTGCAATCACCTAGCACAAAGAGCT  550

seq1  TGATTTTATAAGTGAAGAAACAAAATCCTGAAGAACAGTTTCATGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATAAGTGAAGAAACAAAATCCTGAAGAACAGTTTCATGTTCAA  600

seq1  AGTCACTTAAGTTGTGGCAGAAGTGGGATATAATTCTCCAACACATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTAAGTTGTGGCAGAAGTGGGATATAATTCTCCAACACATGCAA  650

seq1  TCGCATGCATTTTTTTTGTAATAATTCAGAATGTATTTGTAAATCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGCATTTTTTTTGTAATAATTCAGAATGTATTTGTAAATCAGTAG  700

seq1  GAGTTTACTACTTAGCCTAGGAAATCTCCCAGACATAAGTCTGGTACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACTACTTAGCCTAGGAAATCTCCCAGACATAAGTCTGGTACCTC  750

seq1  TGCCCTGATTAAATGTCTACTGTCTTCTTTAATGTCCTTTCTCTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGATTAAATGTCTACTGTCTTCTTTAATGTCCTTTCTCTTTATTT  800

seq1  CTTTGCTCTAGTTCTTTGGAGAGATGACTCACAAAGAAGGAAGCTTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTAGTTCTTTGGAGAGATGACTCACAAAGAAGGAAGCTTTGGT  850

seq1  TCAGGGATGGAAGATGGTTGTAACACTCAGTGCCAAATCACTTAAGGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGGAAGATGGTTGTAACACTCAGTGCCAAATCACTTAAGGGGT  900

seq1  ATTTTGGACTTTTCCTGTCAAGAAGTAACATCTTAATTCCAATTTCTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGACTTTTCCTGTCAAGAAGTAACATCTTAATTCCAATTTCTACA  950

seq1  AATGTGCAGCTTATGAAGGGGTCTGCAGCCCCATAGGAGGAGTATTAATA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATGTGCAGCTTATGAAGGGGTCTGCAGCCCCATAGGAGGAGTATT-ATA  999

seq1  TGAACTAACCAGTAACCCCAGAGCTCCCTGGGACTAAATCACCAATCAAA  1050
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAACT-ACCAGTAACCCCAGAGCTCCCTGGGACTAAATCACCAATC-AA  1047

seq1  GAAAACACATGGTGGGACTCATGGCTCCAGCTGCATATGTAACAGAGAAT  1100
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  GAAAACACATGGTGGGACTCATGGCTTCAGCTGCATATGTAACAGAAAAT  1097

seq1  GGCCTAGTCGGTCATCA--ATGGAAGGAGAGGCCCTTGGTCCTGTG-AAG  1147
      |||||||||||||||||  | |||||       ||||||||||||| |||
seq2  GGCCTAGTCGGTCATCATGAGGGAAG-------CCTTGGTCCTGTGAAAG  1140

seq1  GTTCTATGCCCCAGTATAGGGGAATGCCAGAGCCAGGAAGCAGGAG-TGA  1196
      |||||||| |||||||||||   |||||     |||  | ||| || |||
seq2  GTTCTATG-CCCAGTATAGG---ATGCC--TATCAG--ACCAGAAGTTGA  1182

seq1  GTGGA-CTGGGGAGCA-GGGGGAGGGAGGA  1224
      || || ||||||  ||  ||||||||||||
seq2  GTTGACCTGGGGGACACAGGGGAGGGAGGA  1212

seq1: chr13_81919980_81921149
seq2: B6Ng01-167C24.g_67_1209 (reverse)

seq1  AAAGAAAAACAGC-AGGATAGGCAAGTTGTCTTAATAGCTTCTCAGAGAA  49
      |||| ||| |||| |||||||||||| |||| | |  |||| |||||| |
seq2  AAAG-AAATCAGCAAGGATAGGCAAG-TGTCCTTAAGGCTT-TCAGAG-A  46

seq1  GGTGGGAGAAGCAGCTAAAGACCAATGGATTTGAGTGTCTGCAAGAGTTT  99
      |||||||||||||||| |||||| |||   ||||| ||| || |||| ||
seq2  GGTGGGAGAAGCAGCT-AAGACC-ATG--ATTGAG-GTCCGC-AGAG-TT  89

seq1  TTAGCATGCTGAAGATTTTTGCTAGTTACTTTTGCTACAAAAT-AAAAAT  148
      ||||||||||| ||| ||||||||| ||| ||||||||||||| ||||||
seq2  TTAGCATGCTG-AGA-TTTTGCTAG-TAC-TTTGCTACAAAATAAAAAAT  135

seq1  TATAATTATCATGCGTTGAATTTAAAGCACGGAAATTAGCTCAAGAATCT  198
      ||||| ||||||||| |||  |||||||||||||||||||||||||||||
seq2  TATAA-TATCATGCG-TGA--TTAAAGCACGGAAATTAGCTCAAGAATCT  181

seq1  TAAAAAAAAACTTGCACAAAAATCCAAGTGGATCAAATATGTTTTAGTTG  248
        ||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  --AAAAAAAAC-TGCAC-AAAATCCAAGTGGATCAAATATGTTTTAGTTG  227

seq1  TAGAAACAGAATTTTATTTGATTACTTTTGTCTATATTGACCAAATCCAG  298
      ||||||||||||||   |||||||| ||||||||||||||||||||||||
seq2  TAGAAACAGAATTT--ATTGATTAC-TTTGTCTATATTGACCAAATCCAG  274

seq1  TTCTCCAACTTTTGGTCACTTTTAGTTACTTTTATTTTCTTTGAAATAAT  348
      ||||||||| ||||||||| ||||||||||||||||||| ||||||||||
seq2  TTCTCCAAC-TTTGGTCAC-TTTAGTTACTTTTATTTTC-TTGAAATAAT  321

seq1  TTAAATTTAACTATGTATTAGAAGCATCAAATTTATAATAATTATTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTAACTATGTATTAGAAGCATCAAATTTATAATAATTATTGTGT  371

seq1  GTGTGCATGTGGGCCACAGCCATGGCACGCGTGTGGTGTCAGAAGACCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGGGCCACAGCCATGGCACGCGTGTGGTGTCAGAAGACCAT  421

seq1  TGTTTGAGGTTGGTTCTCTCTTTTCACAATGGGTTTCCAGTGGGGTTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGTTGGTTCTCTCTTTTCACAATGGGTTTCCAGTGGGGTTGCA  471

seq1  AGGCAGGAGAATACAACTTCCCTCATCAGGCTTGTATGAGAAATACTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAATACAACTTCCCTCATCAGGCTTGTATGAGAAATACTTTT  521

seq1  AAGCAAAACTTTCTTTTAAAGTATTAAGTAATAATTTCTTCTTTATTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACTTTCTTTTAAAGTATTAAGTAATAATTTCTTCTTTATTTCA  571

seq1  CTTCCTAGAAGAATGTGAAATTTATGTGTTTCAAGAAAATTCTTCATATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAAGAATGTGAAATTTATGTGTTTCAAGAAAATTCTTCATATT  621

seq1  AAATGAGAATATTTTACCAGCTTTTTAATTCTATCAAAGTTCCATTAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAATATTTTACCAGCTTTTTAATTCTATCAAAGTTCCATTAAAA  671

seq1  AAAATCTCATTATATTATTTCTCAGTAATTTATTCCTTCTAGTTTAGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCATTATATTATTTCTCAGTAATTTATTCCTTCTAGTTTAGTTT  721

seq1  ATTTTGTCCTTTGTTTCAAACATCTCCATGTAAATGGTTTATTTTCACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCTTTGTTTCAAACATCTCCATGTAAATGGTTTATTTTCACCT  771

seq1  TTATTTAATACTTTTCTTCTTAGGCTTGGTTTTACAATCTTAAAATTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATACTTTTCTTCTTAGGCTTGGTTTTACAATCTTAAAATTTTA  821

seq1  GTAGTTTTTTTTTTCACTAGTGTTCTTTAGTATACATATGACGTAATCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTTTTTTCACTAGTGTTCTTTAGTATACATATGACGTAATCTA  871

seq1  ATTTCCTTTTTTTGTTTGTTTGTTTGTTTTTTCGAGACAAGGTTTCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTTTTGTTTGTTTGTTTGTTTTTTCGAGACAAGGTTTCTCTG  921

seq1  TGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  971

seq1  ACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGT  1021

seq1  GAGCCACCACTGCTTGGCCTAATTTCCTTTTAAACTTGTTAGTAAAAGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCACTGCTTGGCCTAATTTCCTTTTAAACTTGTTAGTAAAAGTA  1071

seq1  CTTAATTTTTATATTTTAGGCAGGGTCTACTACTAGTCCTGGCTGGCCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTTATATTTTAGGCAGGGTCTACTACTAGTCCTGGCTGGCCTG  1121

seq1  CAATTCACAATGTAAAGAATTC  1170
      ||||||||||||||||||||||
seq2  CAATTCACAATGTAAAGAATTC  1143