BAC Information

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BAC

Clone NameB6Ng01-167E10
Chromosome13 (Build37)
Map Location 21,509,091 - 21,509,934
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Downstream genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167E10.bB6Ng01-167E10.g
ACCDH958817DH958818
length1,208846
definitionDH958817|Mus musculus domesticus DNA, BAC clone: B6Ng01-167E10, 5' end.DH958818|Mus musculus domesticus DNA, BAC clone: B6Ng01-167E10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgaaccccatttttaatggggttatatgaatt
tctggagtccagcttcttgagctctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaatcatttcccaatctgttggtggcctt
tttatcatattgacagtgtcttttgccatacagaagctttgcaattttat
gaggtcccatttgtcaattcttgatcttatagcacaagccattactgttc
tgtttaggaattttccccctgtgcccatatcttcaaggcttttccctaat
tcctcctctattaatttcagtatctctggtcttatgtgtaggtctttgat
ccacttagacttgagctttgtacaagaagataagaatggatcaattccca
ttcttctacatgataaccactagttgtgccagcaccatttgttttaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtggattcatttctgggtcttcaattctattccattgat
ctacctgtctctcactgtgccagtaccatgcagtttttatcacaattgct
ctgtattacagcttaatatcaggcatggtaattccaccagaggttctttt
attgttgagaatagtttttgctatcctaggtcttttatttttccagatga
atttgcaaattgccctttctatctcagtgaagaattgggttggaattttg
atggggattgcattgaatctgtagattgctttcggcaagatagccatttt
tactatattaaccctgccaatccatgaatatgggagatctttccatcttc
tgagatcttcttcaatttcttttcttcagagacttgaaattcttatcata
cagatctttcactttccttagttagaagtcacacgaaggtattttataat
tatttgggactattgtgaaggtgttgtttccctaatttctttctcagtcc
gtttatcctttgtgtagaggaaaggccattgatttattttgagtatttat
atccagctactgtactgaaagcctgttatcagtttaggagtttctgggtg
gattttcggggtcactatatatactatctagagagccggcaagagggaaa
tatggacttcctctttccaaattggctaccctggaactccttttgggggt
tggatttg
gaattccaaggatgcatctttctgacgtggatccatttattgtttttttc
tggccattgttcgaggtgctgaaactatatctgtaaagcaagaagtctta
aaggaatcagagtgtttggggatattggactccaaagagatgcttctgtg
gatgctagaacagaggaacttgtaaacataagaggatgcaaaggcagcgt
cagcaccctgctggagagagatgatgcaggcgcaatgagtgtgggaagaa
ctccactcagtgctcagttctccttcaacaccagagaatccacactgggg
gaagccattatgactgtgaggaggactgtgggaaggctttaaccagaaat
caggcttgaatgaacatcagtggagccacattgcagagaaaccacatcat
ccaagttaggagtgtgggaaagcctccagtgcctgccatatgaatgtaaa
tcatgtaagcctttccgcctttgctcacaccttgtctagcatcagcgaat
acacagcagagagaagcactaccagtgtaatgagtgttgcaaagccttta
ttcagaatgcagggcgttccaggcatcgtcatagtcacactggtgagaaa
ccttcccagtgtagtcagtgcaataaaagctttagtagccagacactcct
tatgaatcaccagagaaaccacattagagagagactggtaagtgtgacaa
atgtggaaaagccttcagtcagcactgattttttttttttaaagaacaca
tacagttgctgaattggattcattctttggacttgtagtctttggatgtg
agggggttcagtaaagaaactgccaagtgggagtggggtgggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21509091_21509934
seq2: B6Ng01-167E10.g_66_911

seq1  GAATTCCAAGGATGCATCTTTCTGACGTGGATCCATTTATTGTTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGATGCATCTTTCTGACGTGGATCCATTTATTGTTTTTTTC  50

seq1  TGGCCATTGTTCGAGGTGCTGAAACTATATCTGTAAAGCAAGAAGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTGTTCGAGGTGCTGAAACTATATCTGTAAAGCAAGAAGTCTTA  100

seq1  AAGGAATCAGAGTGTTTGGGGATATTGGACTCCAAAGAGATGCTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCAGAGTGTTTGGGGATATTGGACTCCAAAGAGATGCTTCTGTG  150

seq1  GATGCTAGAACAGAGGAACTTGTAAACATAAGAGGATGCAAAGGCAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGAACAGAGGAACTTGTAAACATAAGAGGATGCAAAGGCAGCGT  200

seq1  CAGCACCCTGCTGGAGAGAGATGATGCAGGCGCAATGAGTGTGGGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCTGCTGGAGAGAGATGATGCAGGCGCAATGAGTGTGGGAAGAA  250

seq1  CTCCACTCAGTGCTCAGTTCTCCTTCAACACCAGAGAATCCACACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCAGTGCTCAGTTCTCCTTCAACACCAGAGAATCCACACTGGGG  300

seq1  GAAGCCATTATGACTGTGAGGAGGACTGTGGGAAGGCTTTAACCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATTATGACTGTGAGGAGGACTGTGGGAAGGCTTTAACCAGAAAT  350

seq1  CAGGCTTGAATGAACATCAGTGGAGCCACATTGCAGAGAAACCACATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGAATGAACATCAGTGGAGCCACATTGCAGAGAAACCACATCAT  400

seq1  CCAAGTTAGGAGTGTGGGAAAGCCTCCAGTGCCTGCCATATGAATGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTAGGAGTGTGGGAAAGCCTCCAGTGCCTGCCATATGAATGTAAA  450

seq1  TCATGTAAGCCTTTCCGCCTTTGCTCACACCTTGTCTAGCATCAGCGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAGCCTTTCCGCCTTTGCTCACACCTTGTCTAGCATCAGCGAAT  500

seq1  ACACAGCAGAGAGAAGCACTACCAGTGTAATGAGTGTTGCAAAGCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGAGAGAAGCACTACCAGTGTAATGAGTGTTGCAAAGCCTTTA  550

seq1  TTCAGAATGCAGGGCGTTCCAGGCATCGTCATAGTCACACTGGTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGCAGGGCGTTCCAGGCATCGTCATAGTCACACTGGTGAGAAA  600

seq1  CCTTCCCAGTGTAGTCAGTGCAATAAAAGCTTTAGTAGCCAGACACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGTGTAGTCAGTGCAATAAAAGCTTTAGTAGCCAGACACTCCT  650

seq1  TATGAATCACCAGAGAAACCACATTAGAGAGAGACTGGTAAGTGTGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCACCAGAGAAACCACATTAGAGAGAGACTGGTAAGTGTGACAA  700

seq1  ATGTGGAAAAGCCTTCAGTCAGCACTGA-TTTTTTTTTTTAAAGAACACA  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGTGGAAAAGCCTTCAGTCAGCACTGATTTTTTTTTTTTAAAGAACACA  750

seq1  TACAGTTGCTGAATTGGATTCATTCTTTGGACTTGTAGTCTTTGGATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGCTGAATTGGATTCATTCTTTGGACTTGTAGTCTTTGGATGTG  800

seq1  AGGGGGTTCAGTAAAGAAACTGCCAAGTGGGAGT-GGGTGGGTAGG  844
      |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGGGTTCAGTAAAGAAACTGCCAAGTGGGAGTGGGGTGGGTAGG  846