BAC Information

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BAC

Clone NameB6Ng01-169B20
Chromosome13 (Build37)
Map Location 96,193,858 - 96,289,179
singlet/doubletdoublet
Overlap geneCrhbp, S100z, F2rl1
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1
Downstream geneF2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B20.bB6Ng01-169B20.g
ACCDH960177DH960178
length1,0911,111
definitionDH960177|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B20, 5' end.DH960178|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,288,072 - 96,289,179)(96,193,858 - 96,194,981)
sequence
gaattcctattctgagtgtggctgggcacccaccctttccataggctggt
cccagcctgcgtacaaggagagggcaaactgagcatcagcatgcatgtct
accacccctctccttcagagtgtgactgtctgtgtggcattcgtgctttg
agcctaaggaaacacttcctcccttagttatgtgctgaatcctagcaaca
agaaacctaaggcttgtgaggatgcaggcgaagctggcagtttgggagag
agagagggcgctcacaccagatcctagccgtgctgtggctccccctcccc
ccatttttgtccaccacaactgtgaagaatgtgtatgttgtgtctaaacc
acttttttttttgagacagggtctctctgtttagccctggctgtcctgga
actcactttgtagaccaggctggcctcgaactcagaaatccacctgcctc
tgcctcccgagtgctgggattaaaggcgtgcaccatcacgcctaaaccac
tttttaaattacagccccccccccttccccgatttttgtccaccacaact
gtgaggaatatgtatgttgtgtctaaaccactttttaaattgcagccccc
ctcccccatctgtgtgtgtgtatgtgtgtgtgtgtgtgtttgaacatacc
attgtgtacatggggagataagcttgtggtgtgggacttgtttctctcaa
ccacgtgcgttctggggttcagagtcaggtatgccagcttggaaccaagc
acctttactcgatgagccatcttgccacccctggctgctcactttttatc
tctgttacatctgcgcagatgtactgtgatcacaatgaggtcagagtctg
ttccagcaagattttcttcagagtgtctaatcatctcttattttgtgtgg
ccttagtagttacagaacattatgtacttttctttgggacagagaaatgg
attttccttgcgagaactctcaggctcagcactgacacagaagttcaggt
gctttgaatgagagcgcaccccccatcccatagctcgaatatttggatac
tgctctctagtgagtgtctgtctgaggtgtggtttgctggg
gaattctgttaaaatggacaaaacccttaccagccatctctgccaaaggg
aaacattacacactgcttctagagagcttttaaaacagtagctacatttc
agaattgcctacagagcccttctgcagtgaactcccagggcaggaaaagc
taaagaaacatggagccaggcccaagtggttttgccacctgggggggaaa
aaaaaccacacactatcacaaactccattcagtctcagcagagaggatct
gattggatggtgacagccacctcttgaatggcaaatcttcaggaaatgaa
ctctggggctcagttcctcagcttagatgtacactaacaccaccaaggca
caggttggcctcattgtcaactacagcaacagccgagacctacagtgaca
actgaacccactggcagtgttcccactgattccccagtctttgagaacag
gcttcttggacccttttatatttagatctctagaaaacattggtctattt
ggaaattaccttggtgtgcttttccaaatactaggaataccactgacgtt
gactcctttgtaactggtggccccggtgacatgtacatgctccctgtgct
gtggcttccaagcagcccctctcactgagagggccgctcctccattattg
attttatctatattcattcaacttacaaaagtgactaattcttcgtgcta
ctaacgatcaagagagatggttgatttttaatattttgtttctctgtgtg
catatctgtgtgagtgtttgtgcccatgtgtctgcggtatccccttcaag
ctgaggttctggacacccgtgagctttatgacaagataccaaactccagt
tttcaaggttgagttttaaacttctgaaccaactctccagtcccaggaga
aatactttaaaatcagcaaagtgtgccaagaatatttcacccgctgtaat
gagagaaacaaatgtgtaatgtgtactgactcaaacacagctcacagaaa
tatgagattgtttttattctgggtcaaatatgggtgaccatagcccaggg
acatggatcagacaccgatgacgtgtgtctatatgaaaacgttacttgac
tcgtatgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96288072_96289179
seq2: B6Ng01-169B20.b_43_1133 (reverse)

seq1  CCCAGCAACACCACACCTTCCAGACAGGGCCACTCACTAGAGAGCAGGTA  50
      |||||||| |||||||||  ||||||  | |||||||||||||||| |||
seq2  CCCAGCAA-ACCACACCT--CAGACA--GACACTCACTAGAGAGCA-GTA  44

seq1  TTCAAATATTCGAGCCTATTGGGGATTGGGGGGTGCGCTCTCATTCAAAG  100
      | |||||||||||| ||||  |||| ||||||||||||||||||||||||
seq2  TCCAAATATTCGAG-CTAT--GGGA-TGGGGGGTGCGCTCTCATTCAAAG  90

seq1  CACCCTGAACTTCTGTGGTCAGTGGCCTGAGGCTTGAGAGTTCTCGCAAG  150
      || ||||||||||||| |||||||  |||| || ||||||||||||||||
seq2  CA-CCTGAACTTCTGT-GTCAGTG--CTGA-GCCTGAGAGTTCTCGCAAG  135

seq1  GAAAATCCATTTTCTTCTGTTCCCAAAGAAAGTTACATAATGTTCTGTAA  200
      ||||||||||||   |||| |||||||||||  |||||||||||||||||
seq2  GAAAATCCATTT--CTCTG-TCCCAAAGAAAAGTACATAATGTTCTGTAA  182

seq1  CTACTAAGGCCACACAAAATAAGAGATGATTAGACACTCTGAAG-AAATC  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTACTAAGGCCACACAAAATAAGAGATGATTAGACACTCTGAAGAAAATC  232

seq1  TTGCTGGAACAGACTCTGACCTCATTGTGATCACAGTACATCTGCGCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAACAGACTCTGACCTCATTGTGATCACAGTACATCTGCGCAGA  282

seq1  TGTAACAGAGATAAAAAGTGAGCAGCCAGGGGTGGCAAGATGGCTCATCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGAGATAAAAAGTGAGCAGCCAGGGGTGGCAAGATGGCTCATCG  332

seq1  AGTAAAGGTGCTTGGTTCCAAGCTGGCATACCTGACTCTGAACCCCAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGTGCTTGGTTCCAAGCTGGCATACCTGACTCTGAACCCCAGAA  382

seq1  CGCACGTGGTTGAGAGAAACAAGTCCCACACCACAAGCTTATCTCCCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGTGGTTGAGAGAAACAAGTCCCACACCACAAGCTTATCTCCCCAT  432

seq1  GTACACAATGGTATGTTCAAACACACACACACACACATACACACACACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATGGTATGTTCAAACACACACACACACACATACACACACACAG  482

seq1  ATGGGGGAGGGGGGCTGCAATTTAAAAAGTGGTTTAGACACAACATACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAGGGGGGCTGCAATTTAAAAAGTGGTTTAGACACAACATACAT  532

seq1  ATTCCTCACAGTTGTGGTGGACAAAAATCGGGGAAGGGGGGGGGGCTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCACAGTTGTGGTGGACAAAAATCGGGGAAGGGGGGGGGGCTGTA  582

seq1  ATTTAAAAAGTGGTTTAGGCGTGATGGTGCACGCCTTTAATCCCAGCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGTGGTTTAGGCGTGATGGTGCACGCCTTTAATCCCAGCACT  632

seq1  CGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  682

seq1  AAAGTGAGTTCCAGGACAGCCAGGGCTAAACAGAGAGACCCTGTCTCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGCTAAACAGAGAGACCCTGTCTCAAA  732

seq1  AAAAAAAGTGGTTTAGACACAACATACACATTCTTCACAGTTGTGGTGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGGTTTAGACACAACATACACATTCTTCACAGTTGTGGTGGA  782

seq1  CAAAAATGGGGGGAGGGGGAGCCACAGCACGGCTAGGATCTGGTGTGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGGGGGAGGGGGAGCCACAGCACGGCTAGGATCTGGTGTGAGC  832

seq1  GCCCTCTCTCTCTCCCAAACTGCCAGCTTCGCCTGCATCCTCACAAGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCTCTCTCCCAAACTGCCAGCTTCGCCTGCATCCTCACAAGCCT  882

seq1  TAGGTTTCTTGTTGCTAGGATTCAGCACATAACTAAGGGAGGAAGTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCTTGTTGCTAGGATTCAGCACATAACTAAGGGAGGAAGTGTTT  932

seq1  CCTTAGGCTCAAAGCACGAATGCCACACAGACAGTCACACTCTGAAGGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCTCAAAGCACGAATGCCACACAGACAGTCACACTCTGAAGGAG  982

seq1  AGGGGTGGTAGACATGCATGCTGATGCTCAGTTTGCCCTCTCCTTGTACG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGTAGACATGCATGCTGATGCTCAGTTTGCCCTCTCCTTGTACG  1032

seq1  CAGGCTGGGACCAGCCTATGGAAAGGGTGGGTGCCCAGCCACACTCAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGACCAGCCTATGGAAAGGGTGGGTGCCCAGCCACACTCAGAA  1082

seq1  TAGGAATTC  1108
      |||||||||
seq2  TAGGAATTC  1091

seq1: chr13_96193858_96194981
seq2: B6Ng01-169B20.g_68_1178

seq1  GAATTCTGTTAAAATGGACAAAACCCTTACCAGCCATCTCTGCCAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAAAATGGACAAAACCCTTACCAGCCATCTCTGCCAAAGGG  50

seq1  AAACATTACACACTGCTTCTAGAGAGCTTTTAAAACAGTAGCTACATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTACACACTGCTTCTAGAGAGCTTTTAAAACAGTAGCTACATTTC  100

seq1  AGAATTGCCTACAGAGCCCTTCTGCAGTGAACTCCCAGGGCAGGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCCTACAGAGCCCTTCTGCAGTGAACTCCCAGGGCAGGAAAAGC  150

seq1  TAAAGAAACATGGAGCCAGGCCCAAGTGGTTTTGCCACCTGGGGGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACATGGAGCCAGGCCCAAGTGGTTTTGCCACCTGGGGGGGAAA  200

seq1  AAAAACCACACACTATCACAAACTCCATTCAGTCTCAGCAGAGAGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACACACTATCACAAACTCCATTCAGTCTCAGCAGAGAGGATCT  250

seq1  GATTGGATGGTGACAGCCACCTCTTGAATGGCAAATCTTCAGGAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATGGTGACAGCCACCTCTTGAATGGCAAATCTTCAGGAAATGAA  300

seq1  CTCTGGGGCTCAGTTCCTCAGCTTAGATGTACACTAACACCACCAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGCTCAGTTCCTCAGCTTAGATGTACACTAACACCACCAAGGCA  350

seq1  CAGGTTGGCCTCATTGTCAACTACAGCAACAGCCGAGACCTACAGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCCTCATTGTCAACTACAGCAACAGCCGAGACCTACAGTGACA  400

seq1  ACTGAACCCACTGGCAGTGTTCCCACTGATTCCCCAGTCTTTGAGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCCACTGGCAGTGTTCCCACTGATTCCCCAGTCTTTGAGAACAG  450

seq1  GCTTCTTGGACCCTTTTATATTTAGATCTCTAGAAAACATTGGTCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGACCCTTTTATATTTAGATCTCTAGAAAACATTGGTCTATTT  500

seq1  GGAAATTACCTTGGTGTGCTTTTCCAAATACTAGGAATACCACTGACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTACCTTGGTGTGCTTTTCCAAATACTAGGAATACCACTGACGTT  550

seq1  GACTCCTTTGTAACTGGTGGCCCCGGTGACATGTACATGCTCCCTGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTTGTAACTGGTGGCCCCGGTGACATGTACATGCTCCCTGTGCT  600

seq1  GTGGCTTCCAAGCAGCCCCTCTCACTGAGAGGGCCGCTCCTCCATTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCCAAGCAGCCCCTCTCACTGAGAGGGCCGCTCCTCCATTATTG  650

seq1  ATTTTATCTATATTCATTCAACTTACAAAAGTGACTAATTCTTCGTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTATATTCATTCAACTTACAAAAGTGACTAATTCTTCGTGCTA  700

seq1  CTAACGATCAAGAGAGATGGTTGATTTTTAATATTTTGTTTCTCTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGATCAAGAGAGATGGTTGATTTTTAATATTTTGTTTCTCTGTGTG  750

seq1  CATATCTGTGTGAGTGTTTGTGCCCATGTGTCTGCGGTATCCCCTTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTGTGAGTGTTTGTGCCCATGTGTCTGCGGTATCCCCTTCAAG  800

seq1  CTGAGGTTCTGGACACCCGTGAGCTTTATGACAAGATACCAAACTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCTGGACACCCGTGAGCTTTATGACAAGATACCAAACTCCAGT  850

seq1  TTTCAAGGTTGAGTTTTAAACTTCTGAACCAACTCTCCAGTCCCAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTTGAGTTTTAAACTTCTGAACCAACTCTCCAGTCCCAGGAGA  900

seq1  AATACTTTAAAAATCAGCAAAGTGTGCCAAGAATATTTTCACCCGCTGTA  950
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AATACTTT-AAAATCAGCAAAGTGTGCCAAGAATA-TTTCACCCGCTGTA  948

seq1  ATGAGAAGAAACAAATGTGTAATGTGTACTGACTCAAACCACAGCTCACA  1000
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAG-AGAAACAAATGTGTAATGTGTACTGACTCAAA-CACAGCTCACA  996

seq1  GGAAATATGAGATTGTTTTTATTCTGGGTCAAATATGAGTGACCATAGCC  1050
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -GAAATATGAGATTGTTTTTATTCTGGGTCAAATATGGGTGACCATAGCC  1045

seq1  CAGGGACATGGATTCAGAACACCCGGAATGACGTGTGTCTATATGAAAAC  1100
      |||||||||||| |||| |||||    |||||||||||||||||||||||
seq2  CAGGGACATGGA-TCAG-ACACC---GATGACGTGTGTCTATATGAAAAC  1090

seq1  AGTTACTTGAACTTCGTATGCTCA  1124
       |||||||||   |||||||||||
seq2  -GTTACTTGA--CTCGTATGCTCA  1111