BAC Information

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BAC

Clone NameB6Ng01-169K16
Chromosome13 (Build37)
Map Location 27,897,654 - 28,067,076
singlet/doubletdoublet
Overlap genePrl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036
Upstream geneLOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1
Downstream genePrl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K16.bB6Ng01-169K16.g
ACCDH960584DH960585
length1,0191,114
definitionDH960584|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K16, 5' end.DH960585|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,066,466 - 28,067,076)(27,897,654 - 27,898,791)
sequence
gaattctgtatagatttcataaatgggcaccagattttttacttttcata
atcatcaaatttgtaatagaaattatcaaagtgtattcaaaagtttatga
cacaataaaataacatcatgtgcttgtttttaagccattgaatccactta
gtactggcagtatacacatggatgtgaggctgtgcactttaactttggta
tcctatcagaaccataaccataaaaaatgacattagatcctcagccagtg
gtaggactttgtgagctcctctttttttcatgctagaattttagctgact
tgaccttgtgaatatcttatgtatgtagtccaggacactgtgaattcatt
tgtgcaactacccttccatatctggaaatcaatatttcttgagagttcta
aaattcctctgactcttacattttgtcaccacctcatccatgaatactaa
atttgagtgtgatatacactttcctttagagtggagcactaatagccttt
tattctctgtactctgaccacttgtaagcctttgtattaatcttcactac
tgcaaaacgaaactaatgatgtgagttgagaatttcactgatctatgttt
ataaagataagctattatggaggcagttaaatctctgtctacttagtaga
aataagcctcatttatggcctttattatatctagctataggtttaaagct
cagttcacagtactagtgatgcatttcatcttgaggggggagcccttatc
tctaatcatataaaggttggtcagtcccatagcattcatgcctctataac
aacagagttaatatattgccagactagtccttttcatagtctgcacggtt
catttttgtataagactattgattatgttcctccatccacagaatacaga
gcaacttttggcaccatgagtgatagctaatacaagtgtgatttccagtc
aatacatgattgaattcttcatggttgtgagtccagcatgtgtgtcttca
gcaattggtttatcattat
gaattcagtatcatcctagaaatccattcaatctatcaaataagccacta
ccatatctgaataatggacattttaaacaataaaaatttagaagcacata
acaaataattaagttttatcatacataagtaaatcaattttatattttaa
ttggcttgtggatttatatttcctagtatgttctacatagggtttaagac
ttatattgtcataatcaaataaaatagccttctatattcccagtgaacta
agaaaagtatatttgtgcaggttccaaggtattttcaagaaaactgtgta
ggatggaatttgttataaaactgcagaattaaatgcaaaatgtagttaaa
tggctcatttccttactatattaattttagttttaattgtttatttttga
atgaaacatcaccaactgcatacgtgtgccatgctttcactcatttatac
aatttctagccaccatataactacatatttcatcatttccaggatagtca
gtatgcccagagccaccagctcattgtcaagagcctcaaaaaatgtcaca
catcttctctcgaccttccaaaaccagggagtcaagccatgcagacacat
gtgagtctccacccatagcgtttatttcaccaaatatatacactgctttt
gtcatacgataaagttattttagtcaatatattggaaggaaatggacagt
gactggaaaccaaaagaaaattttattttatagcttataatttgcaagga
aacattaataaatctataaatcaatcatgcagaagatcctctcacaatgc
tgaaccttaaggatctatgtagtctgtagaaaatttaaactattgttgac
attcattgtaaaatgtgaagtaatctggatttatagaatatcaatgtggt
tgtatttatcatatgttgctaatagactctgtgttgacagtatttgcgtt
attaatgcatctaccattctccgggcttcagtacctcctgtctatttctg
ttctgatcctaatgtgtttctactgatgctctgctcaccctatcatacct
gacgtcagctaagaaaacatgcgaatcaattataagagttacacagggtg
tacatccccctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28066466_28067076
seq2: B6Ng01-169K16.b_46_656 (reverse)

seq1  CTTATCTTTATAAACATAGATCAGTGAAATTCTCAACTCACATCATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTATAAACATAGATCAGTGAAATTCTCAACTCACATCATTAGT  50

seq1  TTCGTTTTGCAGTAGTGAAGATTAATACAAAGGCTTACAAGTGGTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTTGCAGTAGTGAAGATTAATACAAAGGCTTACAAGTGGTCAGAG  100

seq1  TACAGAGAATAAAAGGCTATTAGTGCTCCACTCTAAAGGAAAGTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAATAAAAGGCTATTAGTGCTCCACTCTAAAGGAAAGTGTATAT  150

seq1  CACACTCAAATTTAGTATTCATGGATGAGGTGGTGACAAAATGTAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAAATTTAGTATTCATGGATGAGGTGGTGACAAAATGTAAGAGT  200

seq1  CAGAGGAATTTTAGAACTCTCAAGAAATATTGATTTCCAGATATGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAATTTTAGAACTCTCAAGAAATATTGATTTCCAGATATGGAAGG  250

seq1  GTAGTTGCACAAATGAATTCACAGTGTCCTGGACTACATACATAAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGCACAAATGAATTCACAGTGTCCTGGACTACATACATAAGATAT  300

seq1  TCACAAGGTCAAGTCAGCTAAAATTCTAGCATGAAAAAAAGAGGAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGTCAAGTCAGCTAAAATTCTAGCATGAAAAAAAGAGGAGCTCA  350

seq1  CAAAGTCCTACCACTGGCTGAGGATCTAATGTCATTTTTTATGGTTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCTACCACTGGCTGAGGATCTAATGTCATTTTTTATGGTTATGG  400

seq1  TTCTGATAGGATACCAAAGTTAAAGTGCACAGCCTCACATCCATGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAGGATACCAAAGTTAAAGTGCACAGCCTCACATCCATGTGTAT  450

seq1  ACTGCCAGTACTAAGTGGATTCAATGGCTTAAAAACAAGCACATGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGTACTAAGTGGATTCAATGGCTTAAAAACAAGCACATGATGTT  500

seq1  ATTTTATTGTGTCATAAACTTTTGAATACACTTTGATAATTTCTATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTGTCATAAACTTTTGAATACACTTTGATAATTTCTATTACA  550

seq1  AATTTGATGATTATGAAAAGTAAAAAATCTGGTGCCCATTTATGAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATGATTATGAAAAGTAAAAAATCTGGTGCCCATTTATGAAATCT  600

seq1  ATACAGAATTC  611
      |||||||||||
seq2  ATACAGAATTC  611

seq1: chr13_27897654_27898791
seq2: B6Ng01-169K16.g_68_1181

seq1  GAATTCAGTATCATCCTAGAAATCCATTCAATCTATCAAATAAGCCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCATCCTAGAAATCCATTCAATCTATCAAATAAGCCACTA  50

seq1  CCATATCTGAATAATGGACATTTTAAACAATAAAAATTTAGAAGCACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTGAATAATGGACATTTTAAACAATAAAAATTTAGAAGCACATA  100

seq1  ACAAATAATTAAGTTTTATCATACATAAGTAAATCAATTTTATATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATTAAGTTTTATCATACATAAGTAAATCAATTTTATATTTTAA  150

seq1  TTGGCTTGTGGATTTATATTTCCTAGTATGTTCTACATAGGGTTTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGTGGATTTATATTTCCTAGTATGTTCTACATAGGGTTTAAGAC  200

seq1  TTATATTGTCATAATCAAATAAAATAGCCTTCTATATTCCCAGTGAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTCATAATCAAATAAAATAGCCTTCTATATTCCCAGTGAACTA  250

seq1  AGAAAAGTATATTTGTGCAGGTTCCAAGGTATTTTCAAGAAAACTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTATATTTGTGCAGGTTCCAAGGTATTTTCAAGAAAACTGTGTA  300

seq1  GGATGGAATTTGTTATAAAACTGCAGAATTAAATGCAAAATGTAGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAATTTGTTATAAAACTGCAGAATTAAATGCAAAATGTAGTTAAA  350

seq1  TGGCTCATTTCCTTACTATATTAATTTTAGTTTTAATTGTTTATTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTTCCTTACTATATTAATTTTAGTTTTAATTGTTTATTTTTGA  400

seq1  ATGAAACATCACCAACTGCATACGTGTGCCATGCTTTCACTCATTTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATCACCAACTGCATACGTGTGCCATGCTTTCACTCATTTATAC  450

seq1  AATTTCTAGCCACCATATAACTACATATTTCATCATTTCCAGGATAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAGCCACCATATAACTACATATTTCATCATTTCCAGGATAGTCA  500

seq1  GTATGCCCAGAGCCACCAGCTCATTGTCAAGAGCCTCAAAAAATGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCCAGAGCCACCAGCTCATTGTCAAGAGCCTCAAAAAATGTCACA  550

seq1  CATCTTCTCTCGACCTTCCAAAACCAGGGAGTCAAGCCATGCAGACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCTCGACCTTCCAAAACCAGGGAGTCAAGCCATGCAGACACAT  600

seq1  GTGAGTCTCCACCCATAGCGTTTATTTCACCAAATATATACACTGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTCCACCCATAGCGTTTATTTCACCAAATATATACACTGCTTTT  650

seq1  GTCATACGATAAAGTTATTTTAGTCAATATATTGGAAGGAAATGGACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACGATAAAGTTATTTTAGTCAATATATTGGAAGGAAATGGACAGT  700

seq1  GACTGGAAACCAAAAGAAAATTTTATTTTATAGCTTATAATTTGCAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAACCAAAAGAAAATTTTATTTTATAGCTTATAATTTGCAAGGA  750

seq1  AACATTAATAAATCTATAAATCAATCATGCAGAAGATCCTCTCACAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAATAAATCTATAAATCAATCATGCAGAAGATCCTCTCACAATGC  800

seq1  TGAACCTTAAGGATCTATGTAGTCTGTAGAAAATTTAAACTATTGTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTAAGGATCTATGTAGTCTGTAGAAAATTTAAACTATTGTTGAC  850

seq1  ATTCATTGTAAAATGTGAAGTAATCTGGATTTATAGAATATCAATGTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTAAAATGTGAAGTAATCTGGATTTATAGAATATCAATGTGGT  900

seq1  TGTATTTATCATATGTTGCTAATAGACTCTGTGTTGACAGTTATTTGCGT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTATTTATCATATGTTGCTAATAGACTCTGTGTTGACAG-TATTTGCGT  949

seq1  TATTAATGCATCTACCATTTCTTCCGGGCTTTCAAGTACCTCCTGGTTCT  1000
      |||||||||||||||||||   |||||||||   |||||||||||  |||
seq2  TATTAATGCATCTACCATT--CTCCGGGCTT--CAGTACCTCCTG--TCT  993

seq1  ATTTCTGTTTCTGATCCTAAATGTTGTTTCCTAACTGATTGCTCTGCCTT  1050
      ||||||| |||||||||| |||| ||||||   ||||| ||||||||  |
seq2  ATTTCTG-TTCTGATCCT-AATG-TGTTTC--TACTGA-TGCTCTGC--T  1035

seq1  CACCCATATCATACCTGAACGTCAGCTAAAGAAAAACATGCAGATATC-A  1099
      ||||| ||||||||||| |||||||||||   ||||||||| || ||| |
seq2  CACCC-TATCATACCTG-ACGTCAGCTAA--GAAAACATGC-GA-ATCAA  1079

seq1  TTATAAGATGTTACACAGTGTGTAACCATCCCCACTGTG  1138
      |||||||| ||||||||| |||||  ||||||| |||||
seq2  TTATAAGA-GTTACACAGGGTGTA--CATCCCC-CTGTG  1114