BAC Information

Click to search

BAC

Clone NameB6Ng01-169P09
Chromosome13 (Build37)
Map Location 71,461,419 - 71,462,370
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169P09.g
ACCDH960797
length967
definitionDH960797|Mus musculus domesticus DNA, BAC clone: B6Ng01-169P09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgatagattgaaagaataaaatgtaccttttgaatccccaaa
tcctgttagatgccatgcaaaaaaaaatggaggtccctgctggaatcaag
ttcaccataatttggtcgtgatgtaaggacagcatcttgggttatcctct
gggtataaggattcttctgagtaaggaaggaggggagaatgaatggactg
gatatacttcaagccccccagaaatgggctgctcgtgttgcagggtttta
tatgggctgaactcaaacctcacagctctggaagctggaagaaggaagac
atttttcttgaaggaaagcattgtggactgatccaatgatgttatgatgg
gggggaccaaagctatcgtgtgatacaattgttaagcaattatgtgaaaa
atgtaaattaaaatgaaatcttgtatttaaagaaactgagacccaatgat
aaggacacattacaaaaaattacaaaaagaatgtcaaatgcagtccaaag
ttgaaaaccttctgtgcagagcagcagtatagataacttgggaggagggg
ttcggcatcactgcaaacctcacctctaacacacacacacacacacacag
acacacacacacacacacagagagagagagagagagagagagagagagag
agaaacaaggacaacttttctctcacatacatgtacacacacatacacac
atacacacatctaaaaaacacacacaggcacagcaacagtctttacatac
atgtgcacacacagacacatacatatacatatagattcatagacatatac
gtacacatacacagacatacacatgcacacacacaaacatacagtctcac
acacagagatgtcacatgtacatacatagatttcacagtcatacacatag
agacagacatgtatacacacagacacacccattacacacacatgtacata
gccagatggtcacagtc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71461419_71462370
seq2: B6Ng01-169P09.g_83_1033

seq1  TGAAAGAATAAAATATCCCATTTGAATCCCCTAAGCCTGTTAGATGCCAT  50
      |||||||||||||| | || ||||||||||| || |||||||||||||||
seq2  TGAAAGAATAAAATGTACCTTTTGAATCCCCAAATCCTGTTAGATGCCAT  50

seq1  GCAAAGAAGAATGGAGGTCCCTGCTGGAATCAAGTTCACCATCATTTGGT  100
      ||||| || ||||||||||||||||||||||||||||||||| |||||||
seq2  GCAAAAAAAAATGGAGGTCCCTGCTGGAATCAAGTTCACCATAATTTGGT  100

seq1  CTTGATGTAAGGACAGCATCTTGGGTTATCGTCTGGGTATAAGGTTTCTT  150
      | |||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CGTGATGTAAGGACAGCATCTTGGGTTATCCTCTGGGTATAAGGATTCTT  150

seq1  CTGAGTAAGGAAGGAGGGGAGAATGAGTGTACATGACATAGTACAAGCAG  200
      |||||||||||||||||||||||||| || ||  || ||| | |||||  
seq2  CTGAGTAAGGAAGGAGGGGAGAATGAATGGACTGGATATACTTCAAGCCC  200

seq1  CCCAGAAGCTGGCTGCTCCACCTGCAGGGTTTTATATGGGCTGAGCTCAA  250
      |||||||   ||||||||    |||||||||||||||||||||| |||||
seq2  CCCAGAAATGGGCTGCTCGTGTTGCAGGGTTTTATATGGGCTGAACTCAA  250

seq1  ACCTCACAGCTCTGGAAGCTGGAAGAAGGAAGACATTTTTCTTGAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTCACAGCTCTGGAAGCTGGAAGAAGGAAGACATTTTTCTTGAAGGAA  300

seq1  AGCATTGTGGACTGATCCAATGATGTTAGCCCAGGGGGGACCAAAGCTAT  350
      ||||||||||||||||||||||||||||     |||||||||||||||||
seq2  AGCATTGTGGACTGATCCAATGATGTTATGATGGGGGGGACCAAAGCTAT  350

seq1  CGTGTGATACAATTGTTAAGCAATTATGTTTAAAATGTAAATTAAAATTA  400
      |||||||||||||||||||||||||||||  ||||||||||||||||| |
seq2  CGTGTGATACAATTGTTAAGCAATTATGTGAAAAATGTAAATTAAAATGA  400

seq1  AATCTTGTATTTAAAGAAACTGAGACCCAATGATAAGGACACATTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTATTTAAAGAAACTGAGACCCAATGATAAGGACACATTACAAA  450

seq1  AAATTACAAAAAGAATGTCAAATGCAATCCAAAGTTGAAAACCTTCTGTG  500
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATTACAAAAAGAATGTCAAATGCAGTCCAAAGTTGAAAACCTTCTGTG  500

seq1  CAGAGCAGCAGTATAGATAACTTGGGAGGAGGGGTTCGGCATCACTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCAGTATAGATAACTTGGGAGGAGGGGTTCGGCATCACTGCAA  550

seq1  ACCTCACCTCTAACACACACACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTCACCTCTAACACACACACACACACACACAGACACACACACACACAC  600

seq1  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAAGGACAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAAGGACAACT  650

seq1  TTTCTCTCACATACATGTACACACACATACACACATACACACATCT-AAA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTCTCACATACATGTACACACACATACACACATACACACATCTAAAA  700

seq1  AACACACACAGGCACAGCAACAGTC-TTACATACATGTGCACACACAGAC  748
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACACACACAGGCACAGCAACAGTCTTTACATACATGTGCACACACAGAC  750

seq1  ACATACATATACATATAGATTCATAGACATATACGTACACATACACAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATACATATAGATTCATAGACATATACGTACACATACACAGAC  800

seq1  ATACACATGCACACACACAGACATACAGTCTCACACACAGAGATGTACAC  848
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  ATACACATGCACACACACAAACATACAGTCTCACACACAGAGATGT-CAC  849

seq1  ATGTACATACATAGATATACACAGTCATACACATAGAGACAGACATGTAT  898
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ATGTACATACATAGAT-TTCACAGTCATACACATAGAGACAGACATGTAT  898

seq1  ACACACAGACACACCCAGTTACACACACATGTACATAGCCAGATGGTCAC  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACCCA-TTACACACACATGTACATAGCCAGATGGTCAC  947

seq1  AGTC  952
      ||||
seq2  AGTC  951