BAC Information

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BAC

Clone NameB6Ng01-170J16
Chromosome13 (Build37)12 (Build37)
Map Location 28,577,150 - 28,577,46040,567,074 - 40,567,908
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399
Downstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J16.bB6Ng01-170J16.g
ACCDH961274DH961275
length1,0181,027
definitionDH961274|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J16, 5' end.DH961275|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,577,150 - 28,577,460)(40,567,074 - 40,567,908)
sequence
gaattctgtgtgaagagttgatttcggttgaaaattgctgagtcactgtt
caatgctctctgaatctggtctgtgcaaatcgcaacttttcttagattcc
tcctcttccttttcacagagtctaagatgatgacaacaggtgtccctccc
ccttgcctccgatgtggaaatttagcaacactcctccattgattcctagg
aatgccctcctagaattttctccttgtttcaaactgaaggaacgaaggaa
agatggaaggaaggaaggagggagagaatgaaggacgtctgctgagcata
tatccagaagatgttccaactggcaacaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgtc
tctcaacagaagaatggatacagaaaatgtggtacatttatacaacggag
tactcctcagctattaaaaagaatgaatttatgaaatgcctaggcaaatg
gatggacctggacggcatcatcctgagtgaggtaacccaatcacaaaaac
acttgcacaatatgtactcactgataagtggatattgtcccagaaattta
gaatacccaagatataagatacaatttgctaaacgcataaaactcaagaa
gaacgaagaccaaagtgtggacactttgccccttcgtagaattgggaaca
aaaaaaccctggaaggagttacagagacaacgtttggagctgagacaaaa
ggatggaccatctagagactgccatatctggggatccatcccataatcag
cttccaactctgacatcattgcatacactagcaagattttgctgaaagga
cccagatacggctgtctcttgtgagactattccgggcctggcaaacacag
aagtggatgcttacagtcagctattggatggatcacaggccccaatggag
gagctagagaagtacccaaggagctgaacgatctgcaatcctataggtgg
acaacaatatgactaacc
gaattcaatttcttgagtcttctgaagggttgggagctgttagtagttca
cggcaggtgatctggctctgactccataccttatcctctgaacttgtgct
gtggaagcagttgagaaattatctggagagtgggtggcagcctacttcga
tgtgtacttttgacaagggagaggccgtgttactgtcttggaatgggttt
ggtccccggaagagaatgttattacatgctgggtttttgtatgggaaact
gcgcgggaaagtgggtcctagtattaggagatgtgaaataaacactccaa
atagaaagttttctgcttatatttaaataatgtatgtcacgctttctttg
gttttgtaccaaattagctcccttattttattagtaaccaaaagtaaggc
tgcctgcttttggtttacttggcatccccagctgagcctctagggtaata
tctatgggatgaaactctctctcgttcttgtggaaagatgagcccacctg
ggcaagcacacaaagcaagcttttgatatcacaaaactggctttgccacc
tgcacagctgacagccaagtatacaggttcttcctggtccgcaacagaga
acacctgtttttataaatagctgcctcttggcacatctactgactcatag
cttctgtcaaaatctcagtgaagaaaatgtatctcagagccaggcatggt
cctcacatctgtaatctcagcacttggggcaagagagacaggaggatcaa
gagttcaatatcattctgagctacacaggtttggaggctaaccctacatg
agattcctgcctcaaaacaaaaatacatagtcaaaggagggttaaaaaga
catatccgactatgccggggcctagcaaacacagaaatggatgatcacat
tcagctattggatggatcacagggctcccaatggagagctgagaattacc
caggagctaagggactgcaccctatagtgaacacaattgactaccagact
caaagctcttgtctctagctgctatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28577150_28577460
seq2: B6Ng01-170J16.b_759_1061 (reverse)

seq1  GGTTAGTTCATATTGTTGTTCCACTTATAGGATTGCAGATCCCTTCAGCT  50
      |||||| ||||||||||| ||||| ||||||||||||||| | |||||||
seq2  GGTTAG-TCATATTGTTG-TCCACCTATAGGATTGCAGAT-CGTTCAGCT  47

seq1  CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCA  100
      |||||||||| ||||||||||||||||||||||  |||||||||||||||
seq2  CCTTGGGTAC-TTCTCTAGCTCCTCCATTGGGG--CCTGTGATCCATCCA  94

seq1  ATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCCCGGGATAGT  150
      |||||||||||| ||||||||||||||||||||||||| ||||| |||||
seq2  ATAGCTGACTGTAAGCATCCACTTCTGTGTTTGCCAGG-CCCGGAATAGT  143

seq1  CTCACAAGAGACAGCCATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCACAAGAGACAGCCGTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTG  193

seq1  TATGCAATGGTGTCAGTGTTTGGAAGCCGATTATGGGATGGATCCCCGGA  250
      ||||||||| |||||| | |||||||| ||||||||||||||||||| ||
seq2  TATGCAATGATGTCAGAG-TTGGAAGCTGATTATGGGATGGATCCCCAGA  242

seq1  TATGGCAGTCTCTAGATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGT  300
      |||||||||||||||||||||||||||||  |||||||||||||| ||||
seq2  TATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACGTTGT  292

seq1  CTCTGTAACTC  311
      |||||||||||
seq2  CTCTGTAACTC  303

seq1: chr12_40567074_40567908
seq2: B6Ng01-170J16.g_273_1092

seq1  GGAAGAGAATGTTATTACATGCTGGTCATTTGTATGTGAAGCCACCCGTG  50
      |||||||||||||||||||||||||   |||||||| ||| |  | || |
seq2  GGAAGAGAATGTTATTACATGCTGGGTTTTTGTATGGGAAACTGCGCGGG  50

seq1  TTATTGGCTCTTATTATTTGTCATAAG-GAAATAAACACTCCAAATAGAA  99
        | ||| || || |||| |  | | | ||||||||||||||||||||||
seq2  AAAGTGGGTCCTAGTATTAG-GAGATGTGAAATAAACACTCCAAATAGAA  99

seq1  AGTTTTCTGCTTATATTTAAATAATGTATGTCACGCTTTCTTTGGTTTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGCTTATATTTAAATAATGTATGTCACGCTTTCTTTGGTTTTG  149

seq1  TACCAAATTAGCTCCCTTATTTTATTAGTAACCAAAAGTAAGGCAAGCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TACCAAATTAGCTCCCTTATTTTATTAGTAACCAAAAGTAAGGCTGCCTG  199

seq1  CTTTTGTACTTACTTGGCATCCCCAGCTGAGAAGTCTAGGGTAATAGTCA  249
      ||||||   ||||||||||||||||||||||   ||||||||||||   |
seq2  CTTTTG-GTTTACTTGGCATCCCCAGCTGAG-CCTCTAGGGTAATATCTA  247

seq1  TGGGATGAAAC-CTTTAGAGGTCATCTGTGGAAAGATGAGCCCACCTGGG  298
      ||||||||||| || |   | ||   ||||||||||||||||||||||||
seq2  TGGGATGAAACTCTCTCTCGTTC--TTGTGGAAAGATGAGCCCACCTGGG  295

seq1  CAAGCACACAAAGCAAGCTTTTGATATCACAAAACTGGCTTTGCCACCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACACAAAGCAAGCTTTTGATATCACAAAACTGGCTTTGCCACCTG  345

seq1  CACAGCTGACAGCCAAGTATACAGGTTCTTCCTGGTCCGCAACAGAGAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGACAGCCAAGTATACAGGTTCTTCCTGGTCCGCAACAGAGAAC  395

seq1  ACCTGTTTTTATAAATAGCTGCCTCTTGGCACATCTACTGACTCATAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTTATAAATAGCTGCCTCTTGGCACATCTACTGACTCATAGCT  445

seq1  TCTGTCAAAATCTCAGTGAAGAAAATGTATCTCAGAGCCAGGCATGGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAATCTCAGTGAAGAAAATGTATCTCAGAGCCAGGCATGGTCC  495

seq1  TCACATCTGTAATCTCAGCACTT-GGGCAAGAGAGACAGGAGGATCAAGA  547
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCACATCTGTAATCTCAGCACTTGGGGCAAGAGAGACAGGAGGATCAAGA  545

seq1  GTTCAATATCATTCTGAGCTACACAGGTTT-GAGGCTAACCCTACATGAG  596
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTCAATATCATTCTGAGCTACACAGGTTTGGAGGCTAACCCTACATGAG  595

seq1  A-TCCTGCCTCAAAACAAAAATACATAGTCAAA-GAGGGTTAAAAAGACA  644
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTCCTGCCTCAAAACAAAAATACATAGTCAAAGGAGGGTTAAAAAGACA  645

seq1  TATCCGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGTC  694
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TATCCGACTATGCCGGGGCCTAGCAAACACAGAAATGGATGATCACATTC  695

seq1  AGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAATTAC  744
      ||||||||||||||||||||||| ||||||||| ||||| ||| ||||||
seq2  AGCTATTGGATGGATCACAGGGCTCCCAATGGA-GAGCT-GAG-AATTAC  742

seq1  CCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAA  794
      || |||||||||  || ||||| |||||||||   |||| ||||| || |
seq2  CC-AGGAGCTAA--GGGACTGC-ACCCTATAG--TGAAC-ACAAT-TG-A  783

seq1  CTAACCAGTACCCCAGAGCTCTTGTCTCTAGCTGCATATGT  835
      || |||||   | || ||||||||||||||||||| |||||
seq2  CT-ACCAG--ACTCAAAGCTCTTGTCTCTAGCTGC-TATGT  820