BAC Information

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BAC

Clone NameB6Ng01-170O18
Chromosome13 (Build37)
Map Location 106,066,616 - 106,130,821
singlet/doubletdoublet
Overlap geneRnf180
Upstream geneAdamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O18.bB6Ng01-170O18.g
ACCDH961515DH961516
length1,148556
definitionDH961515|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O18, 5' end.DH961516|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,066,616 - 106,067,630)(106,130,260 - 106,130,821)
sequence
gaattctcacctgaggaataccaaatggctgagaagcacatgaaaaaaat
gttcaatatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagataaaaaattcaggtgacag
cagatgctggcgaggatgtgaagaaagaggaacactcctccattgctggt
gggattgcaagcttgtacaaccactctggaagtcagtctggaggttcctc
agaaaattgggcatagtagtactggaggatccagcaatacctctctgggg
catatattcagaagaagttccaactggtaataaagacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacttttttttttt
gagacagaatctctctctgagtgtgatgcttgctgactaggctagactga
taagccagaaacgttctacccccaccccacccctgtccctaggatcttct
ttgcctctgtctcctcagggctgggattacaagtatataccaccatgtct
ggccttccctgtgagtaatggggatccaaactggtcacgtggaacctatc
gatacatgtgataaggttacaaaaacctaaacataacgggcaaaatatga
caactaggatggtgtacatatgtccatcctttgacctgtgagccacatgg
aaccacatatggctatgaatgagggccaacacaaaattataaacttaaat
tatgtgagactattttcacaagtttaattttttatttatttattattttt
tttactggctcacaccgttctagggtatactttgaagatgatcatgtcac
aatgttcaaaggctggacataacccttctaggagtacatttgccaagagt
tccttgggtaggacttgtctacctcccctctctctgattctacaatttgc
atttaagatgcatttaaaattattttaatataaaaattactgcaaaacta
tggagttcaaattatagtcctccatggtttttatcatgaacctcttttga
aacacgtaattaattctctcttaccttccttccctaagttttggctgc
tcctggcaaatcaattatattggctgcacatttggtgatatccagccatt
ttctgttttgtttgacaacctccatataatttccaaagtgtgttattatt
tttgtcacttaactttttattttttctatacattgccttagcattatcta
caataataacctaagcttctttatccaccccgcagtctcttaaggagaat
atctcaaagggaaatctcatagctcagaaaacctcattaagatatgtaag
aacttgtcaggtccaatgtggactatatttgcccatagcattggcagttg
ctgtatctgttgataaatgcactgaaaccctgaagtgtattagttttaac
agtggttgcaatcagaggtttatgccttaaaaattcaattactactattt
gaaatttcataaaatctaagccaaggattaatagataatgaagtcccttt
gctgaggtacaatccactaagtacttccattggccaaaaatgttggttaa
aaaattttgcaatttaatatgctcatgtgtgtgtgtgtgtggtgttggtg
tgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106066616_106067630
seq2: B6Ng01-170O18.b_181_1191

seq1  ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGAAGAAAGAGGAACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGAAGAAAGAGGAACACTC  50

seq1  CTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGT  100

seq1  CTGGAGGTTCCTCAGAAAATTGGGCATAGTAGTACTGGAGGATCCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTTCCTCAGAAAATTGGGCATAGTAGTACTGGAGGATCCAGCAA  150

seq1  TACCTCTCTGGGGCATATATTCAGAAGAAGTTCCAACTGGTAATAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCTGGGGCATATATTCAGAAGAAGTTCCAACTGGTAATAAAGAC  200

seq1  ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG  250

seq1  GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT  300

seq1  ACTTTTTTTTTTTGAGACAGAATCTCTCTCTGAGTGTGATGCTTGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTTGAGACAGAATCTCTCTCTGAGTGTGATGCTTGCTGAC  350

seq1  TAGGCTAGACTGATAAGCCAGAAACGTTCTACCCCCACCCCACCCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGACTGATAAGCCAGAAACGTTCTACCCCCACCCCACCCCTGTC  400

seq1  CCTAGGATCTTCTTTGCCTCTGTCTCCTCAGGGCTGGGATTACAAGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATCTTCTTTGCCTCTGTCTCCTCAGGGCTGGGATTACAAGTATA  450

seq1  TACCACCATGTCTGGCCTTCCCTGTGAGTAATGGGGATCCAAACTGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCATGTCTGGCCTTCCCTGTGAGTAATGGGGATCCAAACTGGTCA  500

seq1  CGTGGAACCTATCGATACATGTGATAAGGTTACAAAAACCTAAACATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAACCTATCGATACATGTGATAAGGTTACAAAAACCTAAACATAAC  550

seq1  GGGCAAAATATGACAACTAGGATGGTGTACATATGTCCATCCTTTGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAATATGACAACTAGGATGGTGTACATATGTCCATCCTTTGACCT  600

seq1  GTGAGCCACATGGAACCACATATGGCTATGAATGAGGGCCAACACAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACATGGAACCACATATGGCTATGAATGAGGGCCAACACAAAAT  650

seq1  TATAAACTTAAATTATGTGAGACTATTTTCACAAGTTTAATTTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTAAATTATGTGAGACTATTTTCACAAGTTTAATTTTTTATTT  700

seq1  ATTTATTATTTTTTTTACTGGCTCACACCGTTCTAGGGTATACTTTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTTTTTTTACTGGCTCACACCGTTCTAGGGTATACTTTGAAG  750

seq1  ATGATCATGTCACAATGTTCAAAGGCTGGACATAACCCTTCTAGGAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATGTCACAATGTTCAAAGGCTGGACATAACCCTTCTAGGAGTAC  800

seq1  ATTTGCCAAGAGTTCCTTGGGTAGGACTTGTCTACCTCCCCTCTCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAAGAGTTCCTTGGGTAGGACTTGTCTACCTCCCCTCTCTCTGA  850

seq1  ATCTACAATTTGCAATTAAAGATGCAATTTAAAATTATTTTTAAATATTA  900
       |||||||||||| ||| ||||||| |||||||||||||||  |||| ||
seq2  TTCTACAATTTGC-ATTTAAGATGC-ATTTAAAATTATTTT--AATA-TA  895

seq1  AAAATTACTGCAAAAACTATGAAGTCAAAATTATAGTCAT-CAT-GTTTT  948
      ||||||||||| ||||||||| |||  ||||||||||| | ||| |||||
seq2  AAAATTACTGC-AAAACTATGGAGTTCAAATTATAGTCCTCCATGGTTTT  944

seq1  TATCAATGAA-CTCTTTTGACACAGTTATGTAATTCTCTCTTACTCTCCT  997
      |||| ||||| ||||||||| |||  ||  ||||||||||||||  ||||
seq2  TATC-ATGAACCTCTTTTGAAACACGTAATTAATTCTCTCTTACCTTCCT  993

seq1  TCCCATAGTTTTGGCTGC  1015
      ||||  ||||||||||||
seq2  TCCCTAAGTTTTGGCTGC  1011

seq1: chr13_106130260_106130821
seq2: B6Ng01-170O18.g_70_631 (reverse)

seq1  CACCCACACCAACACCACACACACACACACATGAGCATATTAAATTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACCAACACCACACACACACACACATGAGCATATTAAATTGCAA  50

seq1  AATTTTTTAACCAACATTTTTGGCCAATGGAAGTACTTAGTGGATTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAACCAACATTTTTGGCCAATGGAAGTACTTAGTGGATTGTAC  100

seq1  CTCAGCAAAGGGACTTCATTATCTATTAATCCTTGGCTTAGATTTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAAGGGACTTCATTATCTATTAATCCTTGGCTTAGATTTTATGA  150

seq1  AATTTCAAATAGTAGTAATTGAATTTTTAAGGCATAAACCTCTGATTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATAGTAGTAATTGAATTTTTAAGGCATAAACCTCTGATTGCA  200

seq1  ACCACTGTTAAAACTAATACACTTCAGGGTTTCAGTGCATTTATCAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTAAAACTAATACACTTCAGGGTTTCAGTGCATTTATCAACAG  250

seq1  ATACAGCAACTGCCAATGCTATGGGCAAATATAGTCCACATTGGACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAACTGCCAATGCTATGGGCAAATATAGTCCACATTGGACCTGA  300

seq1  CAAGTTCTTACATATCTTAATGAGGTTTTCTGAGCTATGAGATTTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTACATATCTTAATGAGGTTTTCTGAGCTATGAGATTTCCCTT  350

seq1  TGAGATATTCTCCTTAAGAGACTGCGGGGTGGATAAAGAAGCTTAGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATTCTCCTTAAGAGACTGCGGGGTGGATAAAGAAGCTTAGGTTA  400

seq1  TTATTGTAGATAATGCTAAGGCAATGTATAGAAAAAATAAAAAGTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAGATAATGCTAAGGCAATGTATAGAAAAAATAAAAAGTTAAGT  450

seq1  GACAAAAATAATAACACACTTTGGAAATTATATGGAGGTTGTCAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATAATAACACACTTTGGAAATTATATGGAGGTTGTCAAACAAA  500

seq1  ACAGAAAATGGCTGGATATCACCAAATGTGCAGCCAATATAATTGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGGCTGGATATCACCAAATGTGCAGCCAATATAATTGATTTG  550

seq1  CCAGGAGAATTC  562
      ||||||||||||
seq2  CCAGGAGAATTC  562