BAC Information

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BAC

Clone NameB6Ng01-170O21
Chromosome13 (Build37)
Map Location 18,486,692 - 18,580,800
singlet/doubletdoublet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O21.bB6Ng01-170O21.g
ACCDH961521DH961522
length1,116928
definitionDH961521|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O21, 5' end.DH961522|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,486,692 - 18,487,832)(18,579,876 - 18,580,800)
sequence
gaattcctcatatcaataaattatgacacagagaatagatgatagaataa
acttggaatttatatgtaatctgggtggaagatggcaattgaataggata
gttcatgtagaagaaatgagttgacatatcaggtcagggaaagaaagaat
ggctgagagtctgtcataggactgaaatttccacagctttttgtcattca
ctctccataccaacaccagacgatgagaattaaagcgcaaaaaaatttaa
gtaactcaaaaccatagcttgtggcagtgttgttctgttttgtggcaaaa
tgagggagaaagaagcggagctggactcaagttagaatccagccaagtct
ctaggtacttttaacccagaatgctcaagacaccaatctaaattgtgagc
caatttatgagcatctatagtgcagcatgcttatctgcagccaccatcgc
tgtggagctgagctatgccatgcttggtttccagagacccttaaagaagg
aggacctatcatctccatggttcaggaggagttaaaggggagaaatgtct
gctagggtatttcaaaaattccttagaaggttaaagaaaaaaaaaaaact
aagcaaagtgggaactcttattggagatataatagcattccttccagtca
tttcagtggggcatacagccattctgtgattggatgctgctcttgatttt
gtgcttactgagtgttccagcattgttctgattcaccatagtcagtgtgg
ccatgcctatgtgaatttccatgaagtcgtcctggatctgtaggatgggg
ttagtgcctattgtgagctctagtctccagcctggttatcaatgttctct
ttctcaactaaaaagacagtagtatttttgaagagacgggggagagacaa
aagatattgggtgatcgtctctgtgcccatttgtccaacaagagcattca
tgagcaagagcatctcctggagagtctctttcagtcagagcaggtgggac
tgtgtgggttctaatgacattcttggccacagtcatgctgtgtgacgaac
tcttagatggaagtagacttcgatgctctataatagcagcaagaggtgag
tgttcagacttcgaaa
gaattcttatggattctcagagtgagggaggtctgagaaaagatcctgaa
agctttcacgaaatctggccgtgtgacagggaactacaatgcctgtgatt
tagctgctaaggaatcccatcgaccaggagcatcattaaacttttaaggt
aaaaacaaaccacagagcaattggtagatatgaagggtacggagtggcca
gagtgactgcggaaattagaaagtgaaggttctgagatgagaagcaaaat
gcagggaccccgttgtcgacctcagtgtcctgcttaaaaacagcgttctg
tgtgcagtattctgaacactagaagcacgctgggtctctctctctctctc
tctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtg
catttccttcatggagtctgtcaaaactgattgctgctctttcattttct
cttggctatttttagtcaatgataaataaagaaccagaattgtgagatat
cacaccagaaacagcagggaagagccaagatgaataactttacatcagtg
gatgcccatagatcccaggccccttaacatttgtaatactgctaatttct
atgggctttttaaatacgcttccacatgagctctcaaaaacccataaaag
tgtggcatgtaaagtaaatttgtttgtcactttgccctcggcctgccata
ttttattgtcaggagaaatggacattagttggaaaaagcagtttgtttaa
aggccaaacaatttttaaagatggcaaatctgtgcgacgggcttcctttt
caacaaagaagcgcccttcagacaataaaaaaaaaaaaataaacacttca
agcacaattcaagaatatattacaaatctaaaggctcatctcttgttagt
tgcattttcccctccgaggggtggaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18486692_18487832
seq2: B6Ng01-170O21.b_44_1159

seq1  GAATTCCTCATATCAATAAATTATGACACAGAGAATAGATGATAGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATATCAATAAATTATGACACAGAGAATAGATGATAGAATAA  50

seq1  ACTTGGAATTTATATGTAATCTGGGTGGAAGATGGCAATTGAATAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATTTATATGTAATCTGGGTGGAAGATGGCAATTGAATAGGATA  100

seq1  GTTCATGTAGAAGAAATGAGTTGACATATCAGGTCAGGGAAAGAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTAGAAGAAATGAGTTGACATATCAGGTCAGGGAAAGAAAGAAT  150

seq1  GGCTGAGAGTCTGTCATAGGACTGAAATTTCCACAGCTTTTTGTCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAGTCTGTCATAGGACTGAAATTTCCACAGCTTTTTGTCATTCA  200

seq1  CTCTCCATACCAACACCAGACGATGAGAATTAAAGCGCAAAAAAATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATACCAACACCAGACGATGAGAATTAAAGCGCAAAAAAATTTAA  250

seq1  GTAACTCAAAACCATAGCTTGTGGCAGTGTTGTTCTGTTTTGTGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAAAACCATAGCTTGTGGCAGTGTTGTTCTGTTTTGTGGCAAAA  300

seq1  TGAGGGAGAAAGAAGCGGAGCTGGACTCAAGTTAGAATCCAGCCAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGAAAGAAGCGGAGCTGGACTCAAGTTAGAATCCAGCCAAGTCT  350

seq1  CTAGGTACTTTTAACCCAGAATGCTCAAGACACCAATCTAAATTGTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTACTTTTAACCCAGAATGCTCAAGACACCAATCTAAATTGTGAGC  400

seq1  CAATTTATGAGCATCTATAGTGCAGCATGCTTATCTGCAGCCACCATCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATGAGCATCTATAGTGCAGCATGCTTATCTGCAGCCACCATCGC  450

seq1  TGTGGAGCTGAGCTATGCCATGCTTGGTTTCCAGAGACCCTTAAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCTGAGCTATGCCATGCTTGGTTTCCAGAGACCCTTAAAGAAGG  500

seq1  AGGACCTATCATCTCCATGGTTCAGGAGGAGTTAAAGGGGAGAAATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTATCATCTCCATGGTTCAGGAGGAGTTAAAGGGGAGAAATGTCT  550

seq1  GCTAGGGTATTTCAAAAATTCCTTAGAAGGTTAAAGAAAAAAAAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGTATTTCAAAAATTCCTTAGAAGGTTAAAGAAAAAAAAAAAACT  600

seq1  AAGCAAAGTGGGAACTCTTATTGGAGATATAATAGCATTCCTTCCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTGGGAACTCTTATTGGAGATATAATAGCATTCCTTCCAGTCA  650

seq1  TTTCAGTGGGGCATACAGCCATTCTGTGATTGGATGCTGCTCTTGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGGGCATACAGCCATTCTGTGATTGGATGCTGCTCTTGATTTT  700

seq1  GTGCTTACTGAGTGTTCCAGCATTGTTCTGATTCACCATAGTCAGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACTGAGTGTTCCAGCATTGTTCTGATTCACCATAGTCAGTGTGG  750

seq1  CCATGCCTATGTGAATTTCCATGAAGTCGTCCTGGATCTGTAGGATGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTATGTGAATTTCCATGAAGTCGTCCTGGATCTGTAGGATGGGG  800

seq1  TTAGTGCCTATTGTGAGCTCTAGTCTCCAGCCTGGTTATCAATGTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCTATTGTGAGCTCTAGTCTCCAGCCTGGTTATCAATGTTCTCT  850

seq1  TTCTCAACTAAAAAAGACAAGTAGTA-TTTTGAAGACCCCCCAAATGAGA  899
      ||||||||| |||||||| ||||||| |||||||||  |     | ||||
seq2  TTCTCAACT-AAAAAGAC-AGTAGTATTTTTGAAGAGACGGGGGA-GAGA  897

seq1  CAAAAGATA-TGGGTGATCGTCTCTGTGCACATTTTGTCCAACAAGAAGC  948
      ||||||||| ||||||||||||||||||| || ||||||||||||| |||
seq2  CAAAAGATATTGGGTGATCGTCTCTGTGCCCA-TTTGTCCAACAAG-AGC  945

seq1  ATTCATGAGCAAAGAGCATCTCCTGGAGAGTCTCCTTTCAGTCAAGAGCA  998
      |||||||||| |||||||||||||||||||||| ||||||||| ||||||
seq2  ATTCATGAGC-AAGAGCATCTCCTGGAGAGTCT-CTTTCAGTC-AGAGCA  992

seq1  GGGTGGGACTGTGTGGGTCTAAATGACATTCTGGCCAACAGGTCATGCTG  1048
       |||||||||||||||||   ||||||||||| | | ||| |||||||||
seq2  -GGTGGGACTGTGTGGGTTCTAATGACATTCTTGGCCACA-GTCATGCTG  1040

seq1  TTGTGACAGACTCTTTAGATGGGAAGGCCAGACTTTCCAGATGGCTTCTA  1098
       ||||||  |||| |||||| |||||   ||||||    ||||    || 
seq2  -TGTGACGAACTC-TTAGAT-GGAAG--TAGACTT---CGATG----CTC  1078

seq1  AATAAAAGCAGCAGAGGAGGTGAGTGTGCCAAGACTTCAGAAA  1141
       |||| ||||||  | ||||||||||| |  ||||||| ||||
seq2  TATAATAGCAGC--AAGAGGTGAGTGTTC--AGACTTC-GAAA  1116

seq1: chr13_18579876_18580800
seq2: B6Ng01-170O21.g_68_995 (reverse)

seq1  CGTTCCATCCCTCGGA-GGGTAAATGCAAACTGACAAGAGATGAGCCTTT  49
      ||||||| |||||||| ||| |||||| |||| |||||||||||||||||
seq2  CGTTCCACCCCTCGGAGGGGAAAATGC-AACTAACAAGAGATGAGCCTTT  49

seq1  AGATGTTGAATATAATCTTGAATTGTGCTTGAAGTGTCTTATTATCTTGT  99
      |||| |  |||||| |||||||||||||||||||||| ||||| | || |
seq2  AGATTTGTAATATATTCTTGAATTGTGCTTGAAGTGT-TTATT-TTTTTT  97

seq1  CTTTTGATGTCTGAAGGGCGCCTCATTGTTAGAAAAGGAAAGCCGTCGCA  149
       ||||  |||||||||||||| || ||||| |||||||||  ||||||||
seq2  TTTTTATTGTCTGAAGGGCGCTTCTTTGTT-GAAAAGGAAGCCCGTCGCA  146

seq1  CAGCTTTGCCATCTTTAAAAATTGTTTGGCCTTTAA--CAACTGC-TTTT  196
      ||| ||||||||||||||||||||||||||||||||   |||||| ||||
seq2  CAGATTTGCCATCTTTAAAAATTGTTTGGCCTTTAAACAAACTGCTTTTT  196

seq1  CCAACTAATGTCCATTTCTCCTGACAAT-AAATATGGCAGGCCGACGGC-  244
      |||||||||||||||||||||||||||| |||||||||||||||| ||| 
seq2  CCAACTAATGTCCATTTCTCCTGACAATAAAATATGGCAGGCCGAGGGCA  246

seq1  AAGTGACAAAC-AATTTACTTTACATGCCACACTTTTATGGG-TTTTGAG  292
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  AAGTGACAAACAAATTTACTTTACATGCCACACTTTTATGGGTTTTTGAG  296

seq1  AGCTCATGTGGAAGCGTATTTTAAAAAGCCCATAGAAATTAGCAGTATTA  342
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTCATGTGGAAGCGTA-TTTAAAAAGCCCATAGAAATTAGCAGTATTA  345

seq1  CAAATGTTAAGGGGCCTGGGATCTATGGGCATCCACTGATGTAAAGTTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTAAGGGGCCTGGGATCTATGGGCATCCACTGATGTAAAGTTAT  395

seq1  TCATCTTGGCTCTTCCCTGCTGTTTCTGGTGTGATATCTCACAATTCTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGGCTCTTCCCTGCTGTTTCTGGTGTGATATCTCACAATTCTGG  445

seq1  TTCTTTATTTATCATTGACTAAAAATAGCCAAGAGAAAATGAAAGAGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTATCATTGACTAAAAATAGCCAAGAGAAAATGAAAGAGCAG  495

seq1  CAATCAGTTCTGACAGACTCCATGAAGGAAATGCACACACACACACACAC  542
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTTTTGACAGACTCCATGAAGGAAATGCACACACACACACACAC  545

seq1  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC  595

seq1  CCAGCGTGCTTCTAGTGTTCAGAATACTGCACACAGAACGCTGTTTTTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTGCTTCTAGTGTTCAGAATACTGCACACAGAACGCTGTTTTTAA  645

seq1  GCAGGACACTGAGGTCGACAACGGGGTCCCTGCATTTTGCTTCTCATCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACACTGAGGTCGACAACGGGGTCCCTGCATTTTGCTTCTCATCTC  695

seq1  AGAACCTTCACTTTCTAATTTCCGCAGTCACTCTGGCCACTCCGTACCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTCACTTTCTAATTTCCGCAGTCACTCTGGCCACTCCGTACCCT  745

seq1  TCATATCTACCAATTGCTCTGTGGTTTGTTTTTACCTTAAAAGTTTAATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTACCAATTGCTCTGTGGTTTGTTTTTACCTTAAAAGTTTAATG  795

seq1  ATGCTCCTGGTCGATGGGATTCCTTAGCAGCTAAATCACAGGCATTGTAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTGGTCGATGGGATTCCTTAGCAGCTAAATCACAGGCATTGTAG  845

seq1  TTCCCTGTCACACGGCCAGATTTCGTGAAAGCTTTCAGGATCTTTTCTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCACACGGCCAGATTTCGTGAAAGCTTTCAGGATCTTTTCTCA  895

seq1  GACCTCCCTCACTCTGAGAATCCATAAGAATTC  925
      |||||||||||||||||||||||||||||||||
seq2  GACCTCCCTCACTCTGAGAATCCATAAGAATTC  928