BAC Information

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BAC

Clone NameB6Ng01-171A06
Chromosome13 (Build37)
Map Location 21,363,418 - 21,482,219
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A06.bB6Ng01-171A06.g
ACCGA000009GA000010
length932214
definitionB6Ng01-171A06.b B6Ng01-171A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,481,661 - 21,482,219)(21,363,418 - 21,363,631)
sequence
gaattcctttcagaattgccctgttttctgttgcttcctgtgttcggtct
ttcttacatctgttctagtttcttttctgttgctgtaataaatactatat
gacccaaatgctatgactgcttgagggagtaaagggtttatttttatccc
atagtctttgattgaaggaagtccttgcatgaactcatacaggaacctga
gggcacagactgaagcagaggccactgagaaatgctaactggcctgctcc
actgtggggtggggtgctttcagacccttatcctagctccctggaagcca
gtattctgctagcagccttcagatgaacatgtagaactctcagctcctcc
tacaccatgcctgcctgaatgctgccatgttcctgacttgataatggact
gaacctctgaacctgtaagacagccccaattaaatgttgtccttatagga
gctgccttggtccttcgtgcctcagtagctcttctgccttggtgtctgtt
cacagcagtaaaaccctaagacactacctgactttcttctacaatcagga
ctacctgaccagggatggcaccactgataatatgctgggtcctcccacat
cagtgattaaacaagaaaatgccccccacagacttgccacagacctacca
aatggaagagattcctcagttgagatacccttatagtttgtgtcaaattg
acaaaaagtcactagcataatttagttgactcttgtcaaatacatccatt
attaaaccataacctttcctttcttgtttatacccaaggccttatgttaa
tactccaacctaaaacagcataattttataaacgtcaaagtcttttaaaa
aaaaaactcaacattttaaaattagaatctctttaacttttgggttcctg
gtgcagtaagaccaagtcaaagggctagagag
ttgattcttagctggtgagagactttacccagactcctgggttaaagttt
ccttttctttctcacgctcccttagtcttagcttctctatcttgcctctc
atgcagactttgttagttttctgaagtcatgcttccatagacctgttcac
agggtgagcttatggtttcctatctataaatcacaagagtggagtagaag
gggagggggagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21481661_21482219
seq2: B6Ng01-171A06.b_44_602 (reverse)

seq1  GTCAGGTAGTCCTGATTGTAGAAGAAAGTCAGGTAGTGTCTTAGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTAGTCCTGATTGTAGAAGAAAGTCAGGTAGTGTCTTAGGGTTTT  50

seq1  ACTGCTGTGAACAGACACCAAGGCAGAAGAGCTACTGAGGCACGAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGAACAGACACCAAGGCAGAAGAGCTACTGAGGCACGAAGGAC  100

seq1  CAAGGCAGCTCCTATAAGGACAACATTTAATTGGGGCTGTCTTACAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGCTCCTATAAGGACAACATTTAATTGGGGCTGTCTTACAGGTT  150

seq1  CAGAGGTTCAGTCCATTATCAAGTCAGGAACATGGCAGCATTCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCAGTCCATTATCAAGTCAGGAACATGGCAGCATTCAGGCAGG  200

seq1  CATGGTGTAGGAGGAGCTGAGAGTTCTACATGTTCATCTGAAGGCTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTAGGAGGAGCTGAGAGTTCTACATGTTCATCTGAAGGCTGCTA  250

seq1  GCAGAATACTGGCTTCCAGGGAGCTAGGATAAGGGTCTGAAAGCACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATACTGGCTTCCAGGGAGCTAGGATAAGGGTCTGAAAGCACCCCA  300

seq1  CCCCACAGTGGAGCAGGCCAGTTAGCATTTCTCAGTGGCCTCTGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGTGGAGCAGGCCAGTTAGCATTTCTCAGTGGCCTCTGCTTCAG  350

seq1  TCTGTGCCCTCAGGTTCCTGTATGAGTTCATGCAAGGACTTCCTTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCTCAGGTTCCTGTATGAGTTCATGCAAGGACTTCCTTCAATC  400

seq1  AAAGACTATGGGATAAAAATAAACCCTTTACTCCCTCAAGCAGTCATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTATGGGATAAAAATAAACCCTTTACTCCCTCAAGCAGTCATAGC  450

seq1  ATTTGGGTCATATAGTATTTATTACAGCAACAGAAAAGAAACTAGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTCATATAGTATTTATTACAGCAACAGAAAAGAAACTAGAACAG  500

seq1  ATGTAAGAAAGACCGAACACAGGAAGCAACAGAAAACAGGGCAATTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAAAGACCGAACACAGGAAGCAACAGAAAACAGGGCAATTCTGA  550

seq1  AAGGAATTC  559
      |||||||||
seq2  AAGGAATTC  559

seq1: chr13_21363418_21363631
seq2: B6Ng01-171A06.g_76_289

seq1  TTGATTCTTAGCTGGTGAGAGACTTTACCCAGACTCCTGGGTTAAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTTAGCTGGTGAGAGACTTTACCCAGACTCCTGGGTTAAAGTTT  50

seq1  CCTTTTCTTTCTCACGCTCCCTTAGTCTTAGCTTCTCTATCTTGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTCTCACGCTCCCTTAGTCTTAGCTTCTCTATCTTGCCTCTC  100

seq1  ATGCAGACTTTGTTAGTTTTCTGAAGTCATGCTTCCATAGACCTGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTTTGTTAGTTTTCTGAAGTCATGCTTCCATAGACCTGTTCAC  150

seq1  AGGGTGAGCTTATGGTTTCCTATCTATAAATCACAAGAGTGGAGTAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCTTATGGTTTCCTATCTATAAATCACAAGAGTGGAGTAGAAG  200

seq1  GGGAGGGGGAGATG  214
      ||||||||||||||
seq2  GGGAGGGGGAGATG  214