BAC Information

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BAC

Clone NameB6Ng01-171B05
Chromosome13 (Build37)
Map Location 22,186,504 - 22,187,644
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17
Downstream geneV1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171B05.bB6Ng01-171B05.g
ACCGA000055GA000056
length7541,114
definitionB6Ng01-171B05.b B6Ng01-171B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccatttttaatggggttatttgattt
tctggagtccacctttttgagttctttatatatattggatattagtcccc
tatctgatttaggattggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttacagaagctttgcagtttcat
gaggtcccatatgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggctttcccctact
ttctcctctataagtttcagtgtctctggttttatgtggagctccttgat
ccacttagatttgaccttagtgcaaggagataggaatggatcaattcgca
ttcttctacatgataacaaccagttgtgctagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcacttgtcgaagatcaagtg
actataggtgtgtgggttcatttatgggtctccaattctattccattggc
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgtt
ctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttga
gaagagtttttgctatcctaggttttttgttattccagatgaattttgca
gattgctcttttctaatttcgttgaaagaatttgagtttggaattttgat
gggg
gaattctcctcaccgtagagcctgtggtgaaggtgagtgctgggtcaggc
ctgccagggtcaggcttcccagtttgtatttgtactttagaattcatgtg
gttcttagctcaagtcaagcacagcgaagacttccgttgtcagtgccgcc
ctgtcagaaagtctgcacagcctccgtctctggagcacagcttccttctt
cctccaaatcattacctttatgtgactcagaagttatcctcgccatcaat
agggtttaactgctcagaagaaaaatgtggactcagaaagcagaacatca
acaaaagcacttgatcctgtcacatccccgcccccgctccagcccctgcc
ctcagaaaaatataacccactaagcttctgggactagtttccagtttctc
gtcctgtcctctgtcccaattcccagcgtaggtatgctgggactcacatc
tgagtctcagagtaggtggtgtctgccttttcatctttaagactttcttt
aaacacaggcacagaatacatgatagagattaccaaagattctgttttct
gagtaagcttccacaaggatatgaacacacaggagacaccccgattccac
cacaggcagttcaaggtcattggtgtacttggtaggtttattccttgtat
actaaactacaaaatgggactcaaaatcgtgactggctcaccacccctat
ttcaaaatccaatagccttgtataaagctttaagaaaacctatacaattc
atctgtggtagcgatggttctatctgtcacatagtgagaggccaagtctt
ttcaattcaagtctctaattttgggagaacctgatctaagtttgaactca
ggtaaactaacaggctggtaccttaacatttagtttccaagttgcccccc
aacaaacccagaccaagctccagtctcagggttacaccccaacagacacc
tttctcaggtatcccccacaaacctgcaccccaggttacagccaccccct
gcctacacaactaaagccaagaacaggaatagtgtgaatgacttcttacc
cagccagtatgttaggccaaggtagattcaataaatgctgcatgtactct
gcttgctgctacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22186504_22187644
seq2: B6Ng01-171B05.g_66_1179

seq1  GAATTCTCCTCACCGTAGAGCCTGTGGTGAAGGTGAGTGCTGGGTCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCACCGTAGAGCCTGTGGTGAAGGTGAGTGCTGGGTCAGGC  50

seq1  CTGCCAGGGTCAGGCTTCCCAGTTTGTATTTGTACTTTAGAATTCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGGTCAGGCTTCCCAGTTTGTATTTGTACTTTAGAATTCATGTG  100

seq1  GTTCTTAGCTCAAGTCAAGCACAGCGAAGACTTCCGTTGTCAGTGCCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGCTCAAGTCAAGCACAGCGAAGACTTCCGTTGTCAGTGCCGCC  150

seq1  CTGTCAGAAAGTCTGCACAGCCTCCGTCTCTGGAGCACAGCTTCCTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAAAGTCTGCACAGCCTCCGTCTCTGGAGCACAGCTTCCTTCTT  200

seq1  CCTCCAAATCATTACCTTTATGTGACTCAGAAGTTATCCTCGCCATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATCATTACCTTTATGTGACTCAGAAGTTATCCTCGCCATCAAT  250

seq1  AGGGTTTAACTGCTCAGAAGAAAAATGTGGACTCAGAAAGCAGAACATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAACTGCTCAGAAGAAAAATGTGGACTCAGAAAGCAGAACATCA  300

seq1  ACAAAAGCACTTGATCCTGTCACATCCCCGCCCCCGCTCCAGCCCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCACTTGATCCTGTCACATCCCCGCCCCCGCTCCAGCCCCTGCC  350

seq1  CTCAGAAAAATATAACCCACTAAGCTTCTGGGACTAGTTTCCAGTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAATATAACCCACTAAGCTTCTGGGACTAGTTTCCAGTTTCTC  400

seq1  GTCCTGTCCTCTGTCCCAATTCCCAGCGTAGGTATGCTGGGACTCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCTCTGTCCCAATTCCCAGCGTAGGTATGCTGGGACTCACATC  450

seq1  TGAGTCTCAGAGTAGGTGGTGTCTGCCTTTTCATCTTTAAGACTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCAGAGTAGGTGGTGTCTGCCTTTTCATCTTTAAGACTTTCTTT  500

seq1  AAACACAGGCACAGAATACATGATAGAGATTACCAAAGATTCTGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCACAGAATACATGATAGAGATTACCAAAGATTCTGTTTTCT  550

seq1  GAGTAAGCTTCCACAAGGATATGAACACACAGGAGACACCCCGATTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCTTCCACAAGGATATGAACACACAGGAGACACCCCGATTCCAC  600

seq1  CACAGGCAGTTCAAGGTCATTGGTGTACTTGGTAGGTTTATTCCTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAGTTCAAGGTCATTGGTGTACTTGGTAGGTTTATTCCTTGTAT  650

seq1  ACTAAACTACAAAATGGGACTCAAAATCGTGACTGGCTCACCACCCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTACAAAATGGGACTCAAAATCGTGACTGGCTCACCACCCCTAT  700

seq1  TTCAAAATCCAATAGCCTTGTATAAAGCTTTAAGAAAACCTATACAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATCCAATAGCCTTGTATAAAGCTTTAAGAAAACCTATACAATTC  750

seq1  ATCTGTGGTAGCGATGGTTCTATCTGTCACATAGTGAGAGGCCAAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGTAGCGATGGTTCTATCTGTCACATAGTGAGAGGCCAAGTCTT  800

seq1  TTCAATTCAAGTCTCTAATTTT-GGAGAACCTGATCTAAGTTTGAACTCA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCAATTCAAGTCTCTAATTTTGGGAGAACCTGATCTAAGTTTGAACTCA  850

seq1  GGTAAACTAACAGGCTGGTACC-TAACA-TTAGTTTCCAAGTTGCCCCCC  897
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GGTAAACTAACAGGCTGGTACCTTAACATTTAGTTTCCAAGTTGCCCCCC  900

seq1  AACAAAACCCAGACCAAGCTCCAGTCTCCAGGTTACACCCCCAACAAGAC  947
      ||| ||||||||||||||||||||||||  ||||||| ||||||| ||| 
seq2  AAC-AAACCCAGACCAAGCTCCAGTCTCAGGGTTACA-CCCCAAC-AGA-  946

seq1  CACCTTCTCCAGGTTATTCCCCCAACAAACCTGCACCCCCAGGTTACAAG  997
      ||||||   |||| |||  |||| ||||||||||| ||||||||||||  
seq2  CACCTTTCTCAGG-TAT--CCCCCACAAACCTGCA-CCCCAGGTTACA--  990

seq1  CCCACCCCCTGCCTAACCACCACTAAAGCAGAGAACAGAAATTAAGTTTG  1047
       ||||||||||||||  ||| ||||||||  ||||||| |||  ||  ||
seq2  GCCACCCCCTGCCTA--CACAACTAAAGCCAAGAACAGGAAT--AG--TG  1034

seq1  TGATATGACTCCTAACACCAGCCAGTTATGTTAAAGGCCACAGTAGATTT  1097
      ||| |||||| || || |||||||| ||||||  ||||||  |||||  |
seq2  TGA-ATGACTTCTTAC-CCAGCCAG-TATGTT--AGGCCAAGGTAGA--T  1077

seq1  TCAATTAGATGCTTGCACATGTACTCCCTGCTTGCTGCTTACTA  1141
      |||| || |||||    ||||||||  ||||||||||| |||||
seq2  TCAA-TAAATGCT---GCATGTACT--CTGCTTGCTGC-TACTA  1114