BAC Information

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BAC

Clone NameB6Ng01-171J15
Chromosome13 (Build37)
Map Location 4,027,813 - 4,168,116
singlet/doubletdoublet
Overlap geneAkr1c14, Akr1c18, LOC100039262
Upstream geneLOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3
Downstream geneAkr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171J15.bB6Ng01-171J15.g
ACCGA000440GA000441
length1,1031,032
definitionB6Ng01-171J15.b B6Ng01-171J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,027,813 - 4,028,914)(4,167,089 - 4,168,116)
sequence
gaattcagaagttaagagcattagttctagctgttttactatttagtgtg
ctgagaaacccatttcaacatcctggcttggtaacaattgtgataatcaa
tattaacaatgaagcatttatagtgctcaagatgactgacatgcataaag
gatgctggacataattttaatttttccattctcataatgactataatgag
gtcgattttgtttctacagcattataatcctaatggagacttatactgtg
gagtttaacagcatttcatttagacttttcatctgtaaactgtgagtttt
agaagggatgaccttctcttcttttcaacatttgaggtttataacaaggt
ctattttgactttctataatccgtttgtcttgccctgaaggacaatagag
ggaaattatctatgaggtttatattgggcatccagttagttgattgtttg
ccattggctaagtcggggtcttcaaaactatgcagacctaattgctagaa
cccgtagtagtagcttatggagtttaaagatgtgttgtaactcaagggtc
ttgagatggggaaaaacaactctggcttatccagatggccctgagtgtaa
accacagtgcccatctaagcagcctgaggatttctggccacaacatttct
ataagccaccaatcttgttatgaattgtgacaacaccaaaggcaatctaa
cacagagccccaggaacctcctgacagttcttcagtagtcctaaatgaac
tatgtaatcaaagccgaggaggagaagaaagctgaagagcacagatgtag
acagaaggaccatgatgtaagacattcttcctctgctcatgcaagtctga
aggggacagggaccacagactgaaaggactaaagctgttgtcaagtgtca
gttgaagaatgttagactgagatgtgaagccaggaacctaaatgtacctc
tgctattttctggctaccagtccttaaggaaaggtctggacgagtctgag
cctaatcacttccgcttatccctcttgaaactaagggctgaagatgaatg
ccttcataggatctctgagatcatggggtgaaatgttttgcaaggctgag
aga
gaattcccttcttacaactatgatgtttgtaggagccacgtggcttgtat
tttggacaacactatccctagtaccctaaagaaaatagaaagcagaaact
ggaagacaggtgtgagccaagggaataagcctattgatggaatagagtcc
tactgtttgtggcatgaacactttttaaaatgcagatgtttcaaatacct
gcctagtagcccaaattttgcaggctgttgtggtaaatctccaaccccaa
taagcccatgaaaagaacatgcaactcaattataatatttataagatgca
tgcctagattggacagatataccactacactattctattccccagctatg
agatctcttgctccttgctgcttctccaggctacgtggttctgctccagc
ttccttctacctcctcttcctctgtcttactgtctcttccatctcctcat
ctctctctctccttcttcctctcttcctctctaaaacctccagccccacc
tctcccttccactgctgaatcacaggctctaccctttatttgaccatttt
aaatgggtagaaggttcacatgaaatcacctgagtatgtaatccactcct
cttccaggaagccaatctcgaggaagcagaattagcatcaaaatacaagc
agcaccagggcaatccacatcagaagattaacatggaaagtcttggggaa
gagtgagaacaactagagttcagaggaaaacttccagaccacagtacagc
ctttgctctgccttgtgacctggccacagggaggtctgtctctgtagttc
cttactgaataacaagataaatgtttgtacatcatcactggcattcttca
ccttggagttaagaacaggcttcacagtgctagtcagcctgggcctcatt
tgcagacttccacgacaatgaaagatgatcaagaaagataggagtttaaa
gaatgaaaaacactttcacagctgctttacatgcatgtattcttctcgcc
tcttctccttctctcttttttctccccgatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4027813_4028914
seq2: B6Ng01-171J15.b_42_1144

seq1  GAATTCAGAAGTTAAGAGCATTAGTTCTAGCTGTTTTACTATTTAGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTTAAGAGCATTAGTTCTAGCTGTTTTACTATTTAGTGTG  50

seq1  CTGAGAAACCCATTTCAACATCCTGGCTTGGTAACAATTGTGATAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACCCATTTCAACATCCTGGCTTGGTAACAATTGTGATAATCAA  100

seq1  TATTAACAATGAAGCATTTATAGTGCTCAAGATGACTGACATGCATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAATGAAGCATTTATAGTGCTCAAGATGACTGACATGCATAAAG  150

seq1  GATGCTGGACATAATTTTAATTTTTCCATTCTCATAATGACTATAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGACATAATTTTAATTTTTCCATTCTCATAATGACTATAATGAG  200

seq1  GTCGATTTTGTTTCTACAGCATTATAATCCTAATGGAGACTTATACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATTTTGTTTCTACAGCATTATAATCCTAATGGAGACTTATACTGTG  250

seq1  GAGTTTAACAGCATTTCATTTAGACTTTTCATCTGTAAACTGTGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAACAGCATTTCATTTAGACTTTTCATCTGTAAACTGTGAGTTTT  300

seq1  AGAAGGGATGACCTTCTCTTCTTTTCAACATTTGAGGTTTATAACAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATGACCTTCTCTTCTTTTCAACATTTGAGGTTTATAACAAGGT  350

seq1  CTATTTTGACTTTCTATAATCCGTTTGTCTTGCCCTGAAGGACAATAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGACTTTCTATAATCCGTTTGTCTTGCCCTGAAGGACAATAGAG  400

seq1  GGAAATTATCTATGAGGTTTATATTGGGCATCCAGTTAGTTGATTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATCTATGAGGTTTATATTGGGCATCCAGTTAGTTGATTGTTTG  450

seq1  CCATTGGCTAAGTCGGGGTCTTCAAAACTATGCAGACCTAATTGCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCTAAGTCGGGGTCTTCAAAACTATGCAGACCTAATTGCTAGAA  500

seq1  CCCGTAGTAGTAGCTTATGGAGTTTAAAGATGTGTTGTAACTCAAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGTAGTAGCTTATGGAGTTTAAAGATGTGTTGTAACTCAAGGGTC  550

seq1  TTGAGATGGGGAAAAACAACTCTGGCTTATCCAGATGGCCCTGAGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGGGAAAAACAACTCTGGCTTATCCAGATGGCCCTGAGTGTAA  600

seq1  ACCACAGTGCCCATCTAAGCAGCCTGAGGATTTCTGGCCACAACATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGCCCATCTAAGCAGCCTGAGGATTTCTGGCCACAACATTTCT  650

seq1  ATAAGCCACCAATCTTGTTATGAATTGTGACAACACCAAAGGCAATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCACCAATCTTGTTATGAATTGTGACAACACCAAAGGCAATCTAA  700

seq1  CACAGAGCCCCAGGAACCTCCTGACAGTTCTTCAGTAGTCCTAAATGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCCCCAGGAACCTCCTGACAGTTCTTCAGTAGTCCTAAATGAAC  750

seq1  TATGTAATCAAAGCCGAGGAGGAGAAGAAAGCTGAAGAGCACAGATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATCAAAGCCGAGGAGGAGAAGAAAGCTGAAGAGCACAGATGTAG  800

seq1  ACAGAAGGACCATGATGTAAGACATTCTTCCTCTGCTCATGCAAGTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGACCATGATGTAAGACATTCTTCCTCTGCTCATGCAAGTCTGA  850

seq1  AGGGGACAGGGACCACAGACTG-AAGGACTAAAGCTGTTGTCAAGTGTCA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGGGACAGGGACCACAGACTGAAAGGACTAAAGCTGTTGTCAAGTGTCA  900

seq1  GTTGAAGAATGTTAGACTGAGATGTGAAGCCAGG-ACCTAAATGTACCTC  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTGAAGAATGTTAGACTGAGATGTGAAGCCAGGAACCTAAATGTACCTC  950

seq1  TGCTATTTTCTGGCTACCAGTCCTTA--GGAAGGTCTGGACGGAGTTCTG  996
      ||||||||||||||||||||||||||  | ||||||||||| ||| ||||
seq2  TGCTATTTTCTGGCTACCAGTCCTTAAGGAAAGGTCTGGAC-GAG-TCTG  998

seq1  AGCCTAATCACTCCGCCTTATCCCTCCTGAAAACTAGGGCTGAAGATGAA  1046
      |||||||||||| |  |||||||||| |||||   |||||||||||||||
seq2  AGCCTAATCACTTCCGCTTATCCCTCTTGAAACTAAGGGCTGAAGATGAA  1048

seq1  TGCCTTCCATAGGGATCTCTGAGATCATGGGGTGAAATGTTTTGC-AGGC  1095
      |||||| |||| ||||||||||||||||||||||||||||||||| ||||
seq2  TGCCTT-CATA-GGATCTCTGAGATCATGGGGTGAAATGTTTTGCAAGGC  1096

seq1  TGAGAGA  1102
      |||||||
seq2  TGAGAGA  1103

seq1: chr13_4167089_4168116
seq2: B6Ng01-171J15.g_63_1094 (reverse)

seq1  GGATGGGGGAG-AAAAAGAGAGAGGGAGAGAGGGCGAGA--GATACATGC  47
      |||| |||||| ||||||||||| |||||   |||||||   ||||||||
seq2  GGATCGGGGAGAAAAAAGAGAGAAGGAGAAGAGGCGAGAAGAATACATGC  50

seq1  ATGTAAAAGCAAGCTGTGAAAGTGTTTTTCATTCTTTAAACT-CTATCTT  96
      |||| ||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ATGT-AAAGC-AGCTGTGAAAGTGTTTTTCATTCTTTAAACTCCTATCTT  98

seq1  TCTTTGATCATCTTTCATTGTCGTGG-AGTCTGCAAATGAGG-CCAGGCT  144
      || ||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TC-TTGATCATCTTTCATTGTCGTGGAAGTCTGCAAATGAGGCCCAGGCT  147

seq1  GACTAGCACTGTGAAGCCTG-TCTTAACTCCAAGGTGAAGAATGCCAGTG  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTAGCACTGTGAAGCCTGTTCTTAACTCCAAGGTGAAGAATGCCAGTG  197

seq1  ATGATGTACAAACATTTATCTTGTTATTCAGTAAGGAACTACAGAGACAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTACAAACATTTATCTTGTTATTCAGTAAGGAACTACAGAGACAG  247

seq1  ACCTCCCTGTGGCCAGGTCACAAGGCAGAGCAAAGGCTGTACTGTGGTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTGTGGCCAGGTCACAAGGCAGAGCAAAGGCTGTACTGTGGTCT  297

seq1  GGAAGTTTTCCTCTGAACTCTAGTTGTTCTCACTCTTCCCCAAGACTTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTTCCTCTGAACTCTAGTTGTTCTCACTCTTCCCCAAGACTTTC  347

seq1  CATGTTAATCTTCTGATGTGGATTGCCCTGGTGCTGCTTGTATTTTGATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAATCTTCTGATGTGGATTGCCCTGGTGCTGCTTGTATTTTGATG  397

seq1  CTAATTCTGCTTCCTCGAGATTGGCTTCCTGGAAGAGGAGTGGATTACAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTGCTTCCTCGAGATTGGCTTCCTGGAAGAGGAGTGGATTACAT  447

seq1  ACTCAGGTGATTTCATGTGAACCTTCTACCCATTTAAAATGGTCAAATAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTGATTTCATGTGAACCTTCTACCCATTTAAAATGGTCAAATAA  497

seq1  AGGGTAGAGCCTGTGATTCAGCAGTGGAAGGGAGAGGTGGGGCTGGAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGCCTGTGATTCAGCAGTGGAAGGGAGAGGTGGGGCTGGAGGT  547

seq1  TTTAGAGAGGAAGAGAGGAAGAAGGAGAGAGAGAGATGAGGAGATGGAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGGAAGAGAGGAAGAAGGAGAGAGAGAGATGAGGAGATGGAAG  597

seq1  AGACAGTAAGACAGAGGAAGAGGAGGTAGAAGGAAGCTGGAGCAGAACCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAAGACAGAGGAAGAGGAGGTAGAAGGAAGCTGGAGCAGAACCA  647

seq1  CGTAGCCTGGAGAAGCAGCAAGGAGCAAGAGATCTCATAGCTGGGGAATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCCTGGAGAAGCAGCAAGGAGCAAGAGATCTCATAGCTGGGGAATA  697

seq1  GAATAGTGTAGTGGTATATCTGTCCAATCTAGGCATGCATCTTATAAATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGTAGTGGTATATCTGTCCAATCTAGGCATGCATCTTATAAATA  747

seq1  TTATAATTGAGTTGCATGTTCTTTTCATGGGCTTATTGGGGTTGGAGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGAGTTGCATGTTCTTTTCATGGGCTTATTGGGGTTGGAGATT  797

seq1  TACCACAACAGCCTGCAAAATTTGGGCTACTAGGCAGGTATTTGAAACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAACAGCCTGCAAAATTTGGGCTACTAGGCAGGTATTTGAAACAT  847

seq1  CTGCATTTTAAAAAGTGTTCATGCCACAAACAGTAGGACTCTATTCCATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTAAAAAGTGTTCATGCCACAAACAGTAGGACTCTATTCCATC  897

seq1  AATAGGCTTATTCCCTTGGCTCACACCTGTCTTCCAGTTTCTGCTTTCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTTATTCCCTTGGCTCACACCTGTCTTCCAGTTTCTGCTTTCTA  947

seq1  TTTTCTTTAGGGTACTAGGGATAGTGTTGTCCAAAATACAAGCCACGTGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGGGTACTAGGGATAGTGTTGTCCAAAATACAAGCCACGTGG  997

seq1  CTCCTACAAACATCATAGTTGTAAGAAGGGAATTC  1028
      |||||||||||||||||||||||||||||||||||
seq2  CTCCTACAAACATCATAGTTGTAAGAAGGGAATTC  1032