BAC Information

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BAC

Clone NameB6Ng01-171K21
Chromosome13 (Build37)15 (Build37)
Map Location 33,345,051 - 33,346,1896,603,863 - 6,604,455
singlet/doubletsingletsinglet
Overlap geneSerpinb9e
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d
Downstream geneSerpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171K21.bB6Ng01-171K21.g
ACCGA000497GA000498
length1,113920
definitionB6Ng01-171K21.b B6Ng01-171K21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,345,051 - 33,346,189)(6,603,863 - 6,604,455)
sequence
gaattcaagaataattataattttaaatatgagctttagaagaaatatga
atgtaccaggtgatgcagaggcatttgtaaggttcaaataacagtgatct
caatgactcaaataccaattttggaacctgtcacatctgacatctaaaca
tgtaaggtttaaccccaaattgaaggctcttttagtttaatgaaactgag
caattctgacagagtgccattcctggaaatcaaatctagtatcatcaaat
ataagtaagggactagatctaggaactgtggaagcagaaacaggagtctt
cctcagaggtaaagatggtgagagctgagacaacacataatctagtaaga
agcagccccagggcatgattatggtgaaggtatacccatgaatcacagtc
tccggaatgttagaatgtcaaaacactgcagatcacccatgcattcaaag
gtaaaatgtcatactgataattagacccatgacttcttatgacatttaca
tcattccctctgtagtacttgacatgcacaaacaatctttggttttaaaa
tgaaagggtctgaggtgaagctccatgaattccttgagctctaaattgaa
ccatgtggtctggctagtttgcatcaatttgactgtgaaaaatagtgaga
tcagaccatggtggggagaaaggaaagtaaagaggagagaaggaagaaga
caaaaggatgcatagaaaggacaacaatgtgcgatgtgaaggaactggaa
tttcttacctttagtctgtttggagacccacatgtttatgtgttgcctgg
actcctctgcagcttcggcaaaagagagctgctcaatctcagagtgatag
aatttaagacaggactttttaaatgtctttggagagaaaattttcagtga
ggtgacatgcaaaataaaatgtcatcaagatttccaccttctgattatat
gtataataaatgatgagtgtagatatcactttataatagaaaatcatcaa
atgggattattaccacataataataactacagttgtcaattgaaatttaa
aggtcatttaacagaatactgactttgatgagtattgcaggtttacaatg
tgctaggctgtct
gaattccttcccaaaggtcagatgtgtcagggacacgtcatccaggatga
gcccaaatgttgctgcttgctctatgaggtcatcgctcacctgcctggag
gccagctctcgttgggtaatcaattctccagcatcaaattgagccaccac
cgacttgaggatctctgtggtgatagaagacaggacctgctcatcatagt
cctcgacaatgctggtgtagataagaggaagctggctggccaccggctgg
aagaggatgctcagtgtgatattgacgttctgcaatctttgttaccaggt
tccatggttgagagcagcagtcaaagataatcggtttctgtacacaagag
atgaggaaatgagtcccttcccctaccacaatgtcctgtatgccacggaa
tcggtcaaagatgacagctctgtgtccagcatccacattatacaaagcga
gttcaccactcctcctacaactgccaacgccaggccgaactttccaaagg
actcaaacactttggcagccatgactccttgtaaggtttctactcatacc
tgctttcactctgacttccaaatgaattccccccttatctttttttgata
aattttgcttgagagtcatttttattcgatatggctacttcagttttttt
cttgggaccagttgcttggaagatttttattccagctttttactctgagg
cagtgtctttctttgtcactgaagtgtgtttcttgtatgcaggaaaattc
tgggtcctgtttacatagccagtctgttagtctatgtctttttattgggg
aattgagtccattgatattaagagatagtaagggaaaggtatttgttact
tccctgttatttttgttggttagaagtgaaattgttgtttgtttgggcta
tctttcttttggttctgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_33345051_33346189
seq2: B6Ng01-171K21.b_33_1145 (reverse)

seq1  AGACAGCCTAGACCACATAGTAAGACTTGCCAAAATAAACTTCATCAAAG  50
      |||||||||||  ||||| |||| || |||   ||||    |||||||||
seq2  AGACAGCCTAG--CACATTGTAA-ACCTGC---AATA---CTCATCAAAG  41

seq1  TCAGTATTCTGTTAAAATGA-CTTTAAATTTTTCAAATTTGACAACTTGT  99
      ||||||||||||| |||||| |||||||  ||||||  |||||||| |||
seq2  TCAGTATTCTGTT-AAATGACCTTTAAA--TTTCAA--TTGACAAC-TGT  85

seq1  AGTTTTATTTATTTATGTGTTATAATTCCCATTTGATGATTTTCTTATAT  149
      ||  |||||   ||||||| ||  | |||||||||||||||||||  |||
seq2  AG--TTATT--ATTATGTGGTAATAATCCCATTTGATGATTTTCTATTAT  131

seq1  AAAGTGATATCTACACTCATTCAATTTTATTAATACCATATTAATCAGAA  199
      ||||||||||||||||||| |||  |||||| ||| |||| |||||||||
seq2  AAAGTGATATCTACACTCA-TCA--TTTATT-ATA-CATA-TAATCAGAA  175

seq1  GGTGGAAAATCTTGATGACATTTTATTTTGCAATGTCACCTCACTGAAAA  249
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGG-AAATCTTGATGACATTTTATTTTGC-ATGTCACCTCACTGAAAA  223

seq1  TTTTCTCTCCAAAGACATTTAAAAAGTCCTGTCTTAAATTCTATCACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCCAAAGACATTTAAAAAGTCCTGTCTTAAATTCTATCACTCT  273

seq1  GAGATTGAGCAGCTCTCTTTTGCCGAAGCTGCAGAGGAGTCCAGGCAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGCAGCTCTCTTTTGCCGAAGCTGCAGAGGAGTCCAGGCAACA  323

seq1  CATAAACATGTGGGTCTCCAAACAGACTAAAGGTAAGAAATTCCAGTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATGTGGGTCTCCAAACAGACTAAAGGTAAGAAATTCCAGTTCC  373

seq1  TTCACATCGCACATTGTTGTCCTTTCTATGCATCCTTTTGTCTTCTTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCGCACATTGTTGTCCTTTCTATGCATCCTTTTGTCTTCTTCCT  423

seq1  TCTCTCCTCTTTACTTTCCTTTCTCCCCACCATGGTCTGATCTCACTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCTTTACTTTCCTTTCTCCCCACCATGGTCTGATCTCACTATT  473

seq1  TTTCACAGTCAAATTGATGCAAACTAGCCAGACCACATGGTTCAATTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTCAAATTGATGCAAACTAGCCAGACCACATGGTTCAATTTAG  523

seq1  AGCTCAAGGAATTCATGGAGCTTCACCTCAGACCCTTTCATTTTAAAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGGAATTCATGGAGCTTCACCTCAGACCCTTTCATTTTAAAACC  573

seq1  AAAGATTGTTTGTGCATGTCAAGTACTACAGAGGGAATGATGTAAATGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGTTTGTGCATGTCAAGTACTACAGAGGGAATGATGTAAATGTC  623

seq1  ATAAGAAGTCATGGGTCTAATTATCAGTATGACATTTTACCTTTGAATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGTCATGGGTCTAATTATCAGTATGACATTTTACCTTTGAATGC  673

seq1  ATGGGTGATCTGCAGTGTTTTGACATTCTAACATTCCGGAGACTGTGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGATCTGCAGTGTTTTGACATTCTAACATTCCGGAGACTGTGATT  723

seq1  CATGGGTATACCTTCACCATAATCATGCCCTGGGGCTGCTTCTTACTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTATACCTTCACCATAATCATGCCCTGGGGCTGCTTCTTACTAGA  773

seq1  TTATGTGTTGTCTCAGCTCTCACCATCTTTACCTCTGAGGAAGACTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTTGTCTCAGCTCTCACCATCTTTACCTCTGAGGAAGACTCCTG  823

seq1  TTTCTGCTTCCACAGTTCCTAGATCTAGTCCCTTACTTATATTTGATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTCCACAGTTCCTAGATCTAGTCCCTTACTTATATTTGATGAT  873

seq1  ACTAGATTTGATTTCCAGGAATGGCACTCTGTCAGAATTGCTCAGTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTGATTTCCAGGAATGGCACTCTGTCAGAATTGCTCAGTTTCA  923

seq1  TTAAACTAAAAGAGCCTTCAATTTGGGGTTAAACCTTACATGTTTAGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAAAAGAGCCTTCAATTTGGGGTTAAACCTTACATGTTTAGATG  973

seq1  TCAGATGTGACAGGTTCCAAAATTGGTATTTGAGTCATTGAGATCACTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTGACAGGTTCCAAAATTGGTATTTGAGTCATTGAGATCACTGT  1023

seq1  TATTTGAACCTTACAAATGCCTCTGCATCACCTGGTACATTCATATTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAACCTTACAAATGCCTCTGCATCACCTGGTACATTCATATTTCT  1073

seq1  TCTAAAGCTCATATTTAAAATTATAATTATTCTTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCTCATATTTAAAATTATAATTATTCTTGAATTC  1113

seq1: chr15_6603863_6604455
seq2: B6Ng01-171K21.g_71_648 (reverse)

seq1  GGGGAATTCATGTGGAGGTCAGTGTGAAAGCAGGTGTGAGTGGAAGCAAC  50
      ||||||||||| |||| ||||| |||||||||||| ||||| ||| |   
seq2  GGGGAATTCATTTGGAAGTCAGAGTGAAAGCAGGTATGAGTAGAAACCTT  50

seq1  AGAAGGAGTCATGGCTGCCAAAGTGTTTGAGTCCATTGGAAAGTTCGGCC  100
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAGGAGTCATGGCTGCCAAAGTGTTTGAGTCCTTTGGAAAGTTCGGCC  100

seq1  TGGCGTTGGCAGTTGCAGGAGGCGTGGTGAACTCTGCTTTGTATAATGTG  150
      ||||||||||||||| |||||| ||||||||||| |||||||||||||||
seq2  TGGCGTTGGCAGTTGTAGGAGGAGTGGTGAACTC-GCTTTGTATAATGTG  149

seq1  GATGCTGGACACAGAGCTGTCATCTTTGACCGATTCCGTGGCGTACAGGA  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGCTGGACACAGAGCTGTCATCTTTGACCGATTCCGTGGCATACAGGA  199

seq1  CATTGTGGTCGGGGAAGGGACTCATTTCCTCATCCCTTGGGTACAGAAAC  250
      ||||||||| |||||||||||||||||||||||| |||| ||||||||||
seq2  CATTGTGGTAGGGGAAGGGACTCATTTCCTCATCTCTTGTGTACAGAAAC  249

seq1  CAATTATCTTTGACTGCCGCTCTCGACCACGGAACGTACCGGTCATCACT  300
      | ||||||||||||||| |||||| |||| |||||             ||
seq2  CGATTATCTTTGACTGCTGCTCTCAACCATGGAAC-------------CT  286

seq1  GGTAGCAAAGACTTGCAGAACGTCAATATCACACTGCGAATCCTCTTCCG  350
      |||| |||||| |||||||||||||||||||||||| | |||||||||| 
seq2  GGTAACAAAGA-TTGCAGAACGTCAATATCACACTGAGCATCCTCTTCCA  335

seq1  GCCGGTGGCCAGCCAGCTTCCTCGTATCTACACCAGCATTGGCGAGGACT  400
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GCCGGTGGCCAGCCAGCTTCCTCTTATCTACACCAGCATTGTCGAGGACT  385

seq1  ATGATGAGCGGGTCCTGCCTTCTATCACCACAGAGATCCTCAAGTCGGTG  450
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATGATGAGCAGGTCCTGTCTTCTATCACCACAGAGATCCTCAAGTCGGTG  435

seq1  GTGGCTCGATTCGATGCTGGAGAATTGATTACCCAGCGAGAGCTGGTCTC  500
      ||||||| ||| ||||||||||||||||||||||| |||||||||| |||
seq2  GTGGCTCAATTTGATGCTGGAGAATTGATTACCCAACGAGAGCTGGCCTC  485

seq1  CAGGCAGGTGAGCGATGACCTCACAGAGCGAGCGGCAACATTTGGGCTTA  550
      ||||||||||||||||||||||| ||||| ||| |||||||||||||| |
seq2  CAGGCAGGTGAGCGATGACCTCATAGAGCAAGCAGCAACATTTGGGCTCA  535

seq1  TCCTGGATGACGTGTCCCTGACACATCTGACCTTCGGGAAGGA  593
      |||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTGGATGACGTGTCCCTGACACATCTGACCTTTGGGAAGGA  578