BAC Information

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BAC

Clone NameB6Ng01-172G13
Chromosome13 (Build37)
Map Location 19,524,928 - 19,526,012
singlet/doubletsinglet
Overlap genenone
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
Downstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172G13.bB6Ng01-172G13.g
ACCGA001030GA001031
length1,0031,092
definitionB6Ng01-172G13.b B6Ng01-172G13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttaagctctgcaccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagttccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatgtctttgaggcttttccccact
ttctcctctataagttaaactgtctctagttttatgtggagttccttgat
ccacttagatttgacattagtacaaggagataggaatggatcaattcgca
ttcttctacatgataaccacctattgtgccagcactattagttgaaaatg
ctgtcttttttccattggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttctattctattggtctact
tgtctatcgctataccagtaccatgcagtttttatcaaaattgctctgta
gtaaagctttaggtcaggcatggtgattccaccagaggttcttttatcct
taagaagagtttttgctatcctaggttttttgttattcagatgaatctgc
cgattgccctttttattttgttgaagaattgagttggaattttgatgggg
attgcattgaatctgtagattgcgtttggcaagatagccattttttacta
tattgatccttgccatccatgagcatgggagatctttccatcttctgaga
tcttcttttaatttcttccttcagagaacttgaagttcttaacatacaga
tctttgacttccttagttagagtcacgcctaggtattttaatatatttgt
gactatgagacggtggttgtttccctaattttcttcctcagtcctgttta
ttc
gaattctttcagcactcttctaactccaaaaaaatagccttgctcaggta
ttttaacctgtggtcctaaagcatccttacttatatgcccttctccagac
ctcaaactcaatggtatctgtcattctaagtagacctctaagcaatagtc
tgcagaatatgtatttatctggttctcttctctgttagatatttttctac
agctggtgagaagttcactctgtgagacagagctactgagtagagtgagc
actagaggatacatgagggtttttttttcttcccttccctgaaggaaaat
ggtttcctcaaactaattacaaaagataggagaggcttcatgatggcctg
tggttctgttctgcttcactgcattctgtaataaacactctggtcgcaag
actgaattctgatgaaatgacaccatgctgcatgtcactccgcagccaca
gcaaagaggtctccattttcatccgcagcagcctggagctcgggatccca
ccatactctgtgagaatcgaagtacgacagcacattctgaccctcggatt
gcctccaaaccacaaagaacagccacggtgtcaacagccttccttccttc
cctctgaccaagcattctgaagtgatgccctggaagtgtaacatgctggc
tgcgggggtgagtggcttgggaagatgatgttcttttctttctaataaag
cacaggaaaccctgggagtggtgaaactcttttcactttccctaacaggt
gagaaggctaaagtgctaggcaaatgaactttgcttcattaaaaggacaa
aggaaacaaaaaagcgttttgaaagtctctaagattcatctgcaaatgta
atctttatcattttttcttcacaatgtgctctacactgtttgtaaaaaga
atcacttagcaacacccatagtgataaatggggtccttcgagtcagttgt
cttaacctatatgaaacttaatactacggtacagaaaagtgttcctcgag
ggccagtgctccagaatggaatggcagaatgtgttgtcatttcacttccg
aaagtttgttggatgttcctagttggtgaggccatgttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19524928_19526012
seq2: B6Ng01-172G13.g_66_1157

seq1  GAATTCTTTCAGCACTCTTCTAACTCCAAAAAAATAGCCTTGCTCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGCACTCTTCTAACTCCAAAAAAATAGCCTTGCTCAGGTA  50

seq1  TTTTAACCTGTGGTCCTAAAGCATCCTTACTTATATGCCCTTCTCCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTGTGGTCCTAAAGCATCCTTACTTATATGCCCTTCTCCAGAC  100

seq1  CTCAAACTCAATGGTATCTGTCATTCTAAGTAGACCTCTAAGCAATAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCAATGGTATCTGTCATTCTAAGTAGACCTCTAAGCAATAGTC  150

seq1  TGCAGAATATGTATTTATCTGGTTCTCTTCTCTGTTAGATATTTTTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATATGTATTTATCTGGTTCTCTTCTCTGTTAGATATTTTTCTAC  200

seq1  AGCTGGTGAGAAGTTCACTCTGTGAGACAGAGCTACTGAGTAGAGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGAGAAGTTCACTCTGTGAGACAGAGCTACTGAGTAGAGTGAGC  250

seq1  ACTAGAGGATACATGAGGGTTTTTTTTTCTTCCCTTCCCTGAAGGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGATACATGAGGGTTTTTTTTTCTTCCCTTCCCTGAAGGAAAAT  300

seq1  GGTTTCCTCAAACTAATTACAAAAGATAGGAGAGGCTTCATGATGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTCAAACTAATTACAAAAGATAGGAGAGGCTTCATGATGGCCTG  350

seq1  TGGTTCTGTTCTGCTTCACTGCATTCTGTAATAAACACTCTGGTCGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTTCTGCTTCACTGCATTCTGTAATAAACACTCTGGTCGCAAG  400

seq1  ACTGAATTCTGATGAAATGACACCATGCTGCATGTCACTCCGCAGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTCTGATGAAATGACACCATGCTGCATGTCACTCCGCAGCCACA  450

seq1  GCAAAGAGGTCTCCATTTTCATCCGCAGCAGCCTGGAGCTCGGGATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTCTCCATTTTCATCCGCAGCAGCCTGGAGCTCGGGATCCCA  500

seq1  CCATACTCTGTGAGAATCGAAGTACGACAGCACATTCTGACCCTCGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTCTGTGAGAATCGAAGTACGACAGCACATTCTGACCCTCGGATT  550

seq1  GCCTCCAAACCACAAAGAACAGCCACGGTGTCAACAGCCTTCCTTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAACCACAAAGAACAGCCACGGTGTCAACAGCCTTCCTTCCTTC  600

seq1  CCTCTGACCAAGCATTCTGAAGTGATGCCCTGGAAGTGTAACATGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCAAGCATTCTGAAGTGATGCCCTGGAAGTGTAACATGCTGGC  650

seq1  TGCGGGGGTGAGTGGCTTGGGAAGATGATGTTCTTTTCTTTCTAATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGGTGAGTGGCTTGGGAAGATGATGTTCTTTTCTTTCTAATAAAG  700

seq1  CACAGGAAACCCT-GGAGTGGTGAAACTCTTTTCACTTTCCCTAACAGGT  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAACCCTGGGAGTGGTGAAACTCTTTTCACTTTCCCTAACAGGT  750

seq1  GAGAAGGCTAAAGTGCTAGGC-AATGAACTTTGC-TCATTAAAAGGACAA  797
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GAGAAGGCTAAAGTGCTAGGCAAATGAACTTTGCTTCATTAAAAGGACAA  800

seq1  AGGAAACAAAAAAGCG-TTTGAAAGTCTCTAAGATTCATCTGCAAATGTA  846
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGAAACAAAAAAGCGTTTTGAAAGTCTCTAAGATTCATCTGCAAATGTA  850

seq1  ATCTTTATCA-TTTTTCTTCACAATGTGCTCTACACTG-TTGTAAAAAGA  894
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  ATCTTTATCATTTTTTCTTCACAATGTGCTCTACACTGTTTGTAAAAAGA  900

seq1  ATCACTTAGCAACACCCATAGTGATAAAT-GGGTCCTTCGAGTCAGTTGT  943
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCACTTAGCAACACCCATAGTGATAAATGGGGTCCTTCGAGTCAGTTGT  950

seq1  CTTAACTTATATGAAACTTAATACTACGGTAACAG-AAAGTGTTCCTCGA  992
      |||||| ||||||||||||||||||||||| |||| ||||||||||||||
seq2  CTTAACCTATATGAAACTTAATACTACGGT-ACAGAAAAGTGTTCCTCGA  999

seq1  GGGCCAGTGCTCCAGAATGGATTGGCAGAATGTG-TGTCAATTCCACTTC  1041
      ||||||||||||||||||||| |||||||||||| |||| ||| ||||||
seq2  GGGCCAGTGCTCCAGAATGGAATGGCAGAATGTGTTGTC-ATTTCACTTC  1048

seq1  CGGAAG-TTGTTGGATGTTCCTAGTTGGTGAAGGCCATGTTTTGC  1085
      || ||| ||||||||||||||||||||||| ||||||||||||||
seq2  CGAAAGTTTGTTGGATGTTCCTAGTTGGTG-AGGCCATGTTTTGC  1092