BAC Information

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BAC

Clone NameB6Ng01-173I04
Chromosome13 (Build37)
Map Location 45,580,359 - 45,757,879
singlet/doubletdoublet
Overlap geneGmpr, Atxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173I04.bB6Ng01-173I04.g
ACCGA001838GA001839
length1,1741,128
definitionB6Ng01-173I04.b B6Ng01-173I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,580,359 - 45,581,527)(45,756,758 - 45,757,879)
sequence
gaattcttcctgtatccggtgctttcctccatggtatcatcctcatcaga
gcctgcctgatgccagcactatacccttgagtctacaggactgtgagctt
caagaggcctcttttctttattcaccaccaaaatgttccagccttgggca
ttttgttatagcaacagaaaatgagctcatactaccatgctagtcaacag
gacagctcagagaaagcaactttgtgacttgtaaacaaaactagtttttt
ttctctctcattcaacctgtttaccctaaaattggtcccttcaataaaat
cctgaggataggttgggagcttggctcacttatgggaaaagcttgggcat
ttcagtcaacaatcactatctacattgtagacttgagtctgttcccctta
cagaactgctcgtcctgaactgtgctgtgggtttgtgtccatagagggat
gttctgagtcctatgaaattctccctgttccactcattgaggtggagaca
gtttattctactgcatactgatctatgcacacagtcctatgacaggcatg
tttttcaagtttcaacccagaagcaggaacaagtagacttttgcttcata
tttatgaacactgaattttgggacattcatttttatctcttgatttgggt
ctttagaattcagagtgccagggctggggagatggctcagcaagcataac
aacctgagttcagattcccagaatccacgtgaaaagctgggcatgatgtg
agctctgtaacccttgtgctggaggtgtgccgaagagacaggagactctt
gggggttgcttggctgccagccgagctccagggtttaagtgagaggactc
tctcaggagaattagctgcagaggtgacagagcagacatctgataccctc
ttctgaccctcagcacctgcctgagggcatgtatcccacatacacacatg
ggtgtgcaagtttcagcacacacaccacctacacacgtgcacacacacca
taactcccagccagctggtggtaatacaaggaaacaactacactgactgt
ggtggttaataagggggtgggggctagagaagatgctgaccctaaagggt
atgatgtcaatggtctggtaggctgaaaccttgtctatcactatttcacg
catcttgggcagtccaagttcctc

gaattcattgtgctattaaaggcatattcagatgaaagggattgccagct
gccacgagcagagctgttgtgttgatgtccagtagccatggagactgcat
tggactgtcacccaaaatacaaagttcacatttattccagaaagtgagtt
tgtaaggtatggtctgctacttaaacgatcaatatttcaatgtttatgga
cttttaaaaggtttcttccaacctgctgttcccacagaagttcctgaatc
tgatacacaaggagaaatgttttggtacaaaccccatcataagcttgcat
tgcattggtgctggggacaacttgatgtacaccaaagggggttctttata
catctctccaccagaatattgttggctgtgtattttctctgaactgagag
gtgaggattgaactttgtagtgccttcagagggggaaaaaatccagagag
tttaaaaacattcattttgagagagagaaatacattgaaagttgtgagaa
gcttgaacgccagcccaggcactggcgggcttccattcagactctgttgt
aaatgtacactcggtgactaagttcaggcccttcatcatttataagcaaa
actcttttttttttccccccaagatcatcaagaaggaaggggaaaaaaca
tagaaagaaaaaaaagaaaaacagaaataggttaagcaaatttcgtgacg
gtacttatgtgtgcgcagacatgcacaagccccacccccaccccctgcct
ctttccaaacttggaaagcatattttaacagctcaagtatgtctgcctga
tgcatccccatcggcgcctcttttttttcaccctcttcctcatgctttta
attgtatagttgaaatgttttaactattaagcctgtttgctcttcaagct
gtaagcatcccatgaagctaataatgctttctgaaagaaaaggaaattga
tattttagtatcgagggtttccacaaagccaaaggagcaccatgcaaatg
aacttatgggagagacggatttgcaataccctgttggtttcgtgatgata
attcctcagcatgagctggcacactggccttttttctccttctctgggaa
gaatgcatgtactaatggccagaaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45580359_45581527
seq2: B6Ng01-173I04.b_44_1217

seq1  GAATTCTTCCTGTATCCGGTGCTTTCCTCCATGGTATCATCCTCATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGTATCCGGTGCTTTCCTCCATGGTATCATCCTCATCAGA  50

seq1  GCCTGCCTGATGCCAGCACTATACCCTTGAGTCTACAGGACTGTGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGATGCCAGCACTATACCCTTGAGTCTACAGGACTGTGAGCTT  100

seq1  CAAGAGGCCTCTTTTCTTTATTCACCACCAAAATGTTCCAGCCTTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCCTCTTTTCTTTATTCACCACCAAAATGTTCCAGCCTTGGGCA  150

seq1  TTTTGTTATAGCAACAGAAAATGAGCTCATACTACCATGCTAGTCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTATAGCAACAGAAAATGAGCTCATACTACCATGCTAGTCAACAG  200

seq1  GACAGCTCAGAGAAAGCAACTTTGTGACTTGTAAACAAAACTAGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCAGAGAAAGCAACTTTGTGACTTGTAAACAAAACTAGTTTTTT  250

seq1  TTCTCTCTCATTCAACCTGTTTACCCTAAAATTGGTCCCTTCAATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCATTCAACCTGTTTACCCTAAAATTGGTCCCTTCAATAAAAT  300

seq1  CCTGAGGATAGGTTGGGAGCTTGGCTCACTTATGGGAAAAGCTTGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATAGGTTGGGAGCTTGGCTCACTTATGGGAAAAGCTTGGGCAT  350

seq1  TTCAGTCAACAATCACTATCTACATTGTAGACTTGAGTCTGTTCCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCAACAATCACTATCTACATTGTAGACTTGAGTCTGTTCCCCTTA  400

seq1  CAGAACTGCTCGTCCTGAACTGTGCTGTGGGTTTGTGTCCATAGAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCTCGTCCTGAACTGTGCTGTGGGTTTGTGTCCATAGAGGGAT  450

seq1  GTTCTGAGTCCTATGAAATTCTCCCTGTTCCACTCATTGAGGTGGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTCCTATGAAATTCTCCCTGTTCCACTCATTGAGGTGGAGACA  500

seq1  GTTTATTCTACTGCATACTGATCTATGCACACAGTCCTATGACAGGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTACTGCATACTGATCTATGCACACAGTCCTATGACAGGCATG  550

seq1  TTTTTCAAGTTTCAACCCAGAAGCAGGAACAAGTAGACTTTTGCTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGTTTCAACCCAGAAGCAGGAACAAGTAGACTTTTGCTTCATA  600

seq1  TTTATGAACACTGAATTTTGGGACATTCATTTTTATCTCTTGATTTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACACTGAATTTTGGGACATTCATTTTTATCTCTTGATTTGGGT  650

seq1  CTTTAGAATTCAGAGTGCCAGGGCTGGGGAGATGGCTCAGCAAGCATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATTCAGAGTGCCAGGGCTGGGGAGATGGCTCAGCAAGCATAAC  700

seq1  AACCTGAGTTCAGATTCCCAGAATCCACGTGAAAAGCTGGGCATGATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTTCAGATTCCCAGAATCCACGTGAAAAGCTGGGCATGATGTG  750

seq1  AGCTCTGTAACCCTTGTGCTGGAGGTGTGCCGAAGAGACAGGAGACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTAACCCTTGTGCTGGAGGTGTGCCGAAGAGACAGGAGACTCTT  800

seq1  GGGGGTTGCTTGGCTGCCAGCCGAGCTCCAGG--TTTAGTGAGA-GACTC  847
      ||||||||||||||||||||||||||||||||  || ||||||| |||||
seq2  GGGGGTTGCTTGGCTGCCAGCCGAGCTCCAGGGTTTAAGTGAGAGGACTC  850

seq1  TCTCAGGAGAATTAGCTGCAGA-GTGACAGAGCAGACATCTGATACCCTC  896
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCAGGAGAATTAGCTGCAGAGGTGACAGAGCAGACATCTGATACCCTC  900

seq1  TTCTGA-CCTCAGCACCTGCCTGA-GGCATGTAT-CCACATACACACATG  943
      |||||| ||||||||||||||||| ||||||||| |||||||||||||||
seq2  TTCTGACCCTCAGCACCTGCCTGAGGGCATGTATCCCACATACACACATG  950

seq1  GGTGTGCAAG-TTCAGCACACACA-CACCTACACACGTGCACACACACCA  991
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  GGTGTGCAAGTTTCAGCACACACACCACCTACACACGTGCACACACACCA  1000

seq1  TAACTCCCAGCCAGCT-GTGTAATTACAAGGAAACAACTACACTGGACTG  1040
      |||||||||||||||| |||  | |||||||||||||||||||| |||||
seq2  TAACTCCCAGCCAGCTGGTGGTAATACAAGGAAACAACTACACT-GACTG  1049

seq1  T-GTTGTTAAATAGGGTGTTGGGGCTAGAG-AGATGGCTGAGCCTTAGAA  1088
      | || |||||  |||| || |||||||||| |||| ||||| || || | 
seq2  TGGTGGTTAATAAGGGGGTGGGGGCTAGAGAAGAT-GCTGA-CCCTAAAG  1097

seq1  GGTATGATGTCAATGTCTTGTTAGGGCTGAACCCTTGTCTATCACTTATT  1138
      |||||||||||||||   || || ||||||| ||||||||||||||  ||
seq2  GGTATGATGTCAATGGTCTGGTA-GGCTGAAACCTTGTCTATCACTATTT  1146

seq1  CTCAGCATCTTGGGCAGTCACAAGTCTCCTC  1169
      | | ||||||||||||||| ||||| |||||
seq2  CAC-GCATCTTGGGCAGTC-CAAGT-TCCTC  1174


seq1: chr13_45756758_45757879
seq2: B6Ng01-173I04.g_69_1196 (reverse)

seq1  AGGGTTCT-GCCATTAGTACATGCATCCTCCCAGGAGGAGAAGAAAAA--  47
      |||||||| ||||||||||||||||| || ||  ||| || |||||||  
seq2  AGGGTTCTGGCCATTAGTACATGCATTCTTCCCAGAGAAGGAGAAAAAAG  50

seq1  GCCAGTGTGCCAGCCTCATGCTGAG--AATATCATCACGAAACCAACAAG  95
      ||||||||||||| |||||||||||  | |||||||||||||||||| ||
seq2  GCCAGTGTGCCAG-CTCATGCTGAGGAATTATCATCACGAAACCAAC-AG  98

seq1  GGTA-TGCAAATCCGTCTCTCCCAT-AGTTCATTTGCATGGTGCTCCTTT  143
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTATTGCAAATCCGTCTCTCCCATAAGTTCATTTGCATGGTGCTCCTTT  148

seq1  GGCTTTGTGGAAA-CCTCGATACTAAAATATCAATTTCCTTTTCTTTCAG  192
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGGAAACCCTCGATACTAAAATATCAATTTCCTTTTCTTTCAG  198

seq1  AAAGCATTATTAGCTTCATGGGATGCTTACAGCTTGAAGAGCAAACAGGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTATTAGCTTCATGGGATGCTTACAGCTTGAAGAGCAAACAGGC  248

seq1  TTAATAGTTAAAACATTTCAACTATACAATTAAAAGCATGAGGAAGAGGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTTAAAACATTTCAACTATACAATTAAAAGCATGAGGAAGAGGG  298

seq1  TGAAAAAAAAGAGGCGCCGATGGGGATGCATCAGGCAGACATACTTGAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAGAGGCGCCGATGGGGATGCATCAGGCAGACATACTTGAGC  348

seq1  TGTTAAAATATGCTTTCCAAGTTTGGAAAGAGGCAGGGGGTGGGGGTGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAATATGCTTTCCAAGTTTGGAAAGAGGCAGGGGGTGGGGGTGGG  398

seq1  GCTTGTGCATGTCTGCGCACACATAAGTACCGTCACGAAATTTGCTTAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCATGTCTGCGCACACATAAGTACCGTCACGAAATTTGCTTAAC  448

seq1  CTATTTCTGTTTTTCTTTTTTTTCTTTCTATGTTTTTTCCCCTTCCTTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGTTTTTCTTTTTTTTCTTTCTATGTTTTTTCCCCTTCCTTCT  498

seq1  TGATGATCTTGGGGGGAAAAAAAAAAGAGTTTTGCTTATAAATGATGAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCTTGGGGGGAAAAAAAAAAGAGTTTTGCTTATAAATGATGAAG  548

seq1  GGCCTGAACTTAGTCACCGAGTGTACATTTACAACAGAGTCTGAATGGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAACTTAGTCACCGAGTGTACATTTACAACAGAGTCTGAATGGAA  598

seq1  GCCCGCCAGTGCCTGGGCTGGCGTTCAAGCTTCTCACAACTTTCAATGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCCAGTGCCTGGGCTGGCGTTCAAGCTTCTCACAACTTTCAATGTA  648

seq1  TTTCTCTCTCTCAAAATGAATGTTTTTAAACTCTCTGGATTTTTTCCCCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTCAAAATGAATGTTTTTAAACTCTCTGGATTTTTTCCCCC  698

seq1  TCTGAAGGCACTACAAAGTTCAATCCTCACCTCTCAGTTCAGAGAAAATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCACTACAAAGTTCAATCCTCACCTCTCAGTTCAGAGAAAATA  748

seq1  CACAGCCAACAATATTCTGGTGGAGAGATGTATAAAGAACCCCCTTTGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAACAATATTCTGGTGGAGAGATGTATAAAGAACCCCCTTTGGT  798

seq1  GTACATCAAGTTGTCCCCAGCACCAATGCAATGCAAGCTTATGATGGGGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCAAGTTGTCCCCAGCACCAATGCAATGCAAGCTTATGATGGGGT  848

seq1  TTGTACCAAAACATTTCTCCTTGTGTATCAGATTCAGGAACTTCTGTGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCAAAACATTTCTCCTTGTGTATCAGATTCAGGAACTTCTGTGGG  898

seq1  AACAGCAGGTTGGAAGAAACCTTTTAAAAGTCCATAAACATTGAAATATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGTTGGAAGAAACCTTTTAAAAGTCCATAAACATTGAAATATT  948

seq1  GATCGTTTAAGTAGCAGACCATACCTTACAAACTCACTTTCTGGAATAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTTTAAGTAGCAGACCATACCTTACAAACTCACTTTCTGGAATAAA  998

seq1  TGTGAACTTTGTATTTTGGGTGACAGTCCAATGCAGTCTCCATGGCTACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTTGTATTTTGGGTGACAGTCCAATGCAGTCTCCATGGCTACT  1048

seq1  GGACATCAACACAACAGCTCTGCTCGTGGCAGCTGGCAATCCCTTTCATC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCAACACAACAGCTCTGCTCGTGGCAGCTGGCAATCCCTTTCATC  1098

seq1  TGAATATGCCTTTAATAGCACAATGAATTC  1122
      ||||||||||||||||||||||||||||||
seq2  TGAATATGCCTTTAATAGCACAATGAATTC  1128


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