BAC Information

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BAC

Clone NameB6Ng01-175G09
Chromosome7 (Build37)13 (Build37)
Map Location 5,788,246 - 5,788,85615,331,141 - 15,331,580
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
Downstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G09.bB6Ng01-175G09.g
ACCGA003213GA003214
length1,140991
definitionB6Ng01-175G09.b B6Ng01-175G09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,788,246 - 5,788,856)(15,331,141 - 15,331,580)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtcccgagttttcttgtattttttcgtcccggatttcagcaccaattc
ttatccgcgttctcacgcccggccaggaaagaacacaacaaaccaaaatc
ttctgcggcaaaactttattgcttacatcttcaggagccaggagcgcaaa
cccccagccccaaaagcgaaagccaccccactaacaaaaccgaaacccct
tccctatttaggagagttatatttcgcctaggacgcatcactccctgatt
ggctgcagcccatggccgagctgacgttcacgggaaaggcagagtacaag
tagtcgtaaaatacccttggcacatgcgcagattatttgtttaccactta
gaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggctc
ccaacattcttacatttgcctttctccatctggtaatctctgactagttg
ttatagttgtctctggttagagcttgttcctcgggtgactctgttagcct
ctatcagcagacctgggagactacctctctctttagtttcagtggtcaga
gtattctctgcaagcaagctctcttcttgcagggaaggtgcccagatatc
tggtgttcgaatctgcctcctggcagaatttgtgatccactcagcagagg
acttaggatcccgtgggagatcctgtgtgggtccttgtgagtgtccggag
actccaggggcaaggcaccccggtgctggagtggcccggatgggacttgt
gcccctgatcaggccaggttatctgcttccctagttaatgcagtctcagg
tcccgcacaattgaattggagcagatgctgtgttccaatcaccagaggtc
ttaggatcccgtggggaatcctctgtgggtccttgcaggtgtccagagac
tctgctggcaagtcaccctgttgctggagtgaccggattccatattctct
tctatacactgtctttacattcccctcactatattcactctgccatgtca
ttatcccttaatgctttaacaacctggtactatcaagttc
gaattcctcatctttccaagacttttatcatgaagtggtattggattttc
tcaaatgctttctcagcactaatgagatgatcatttgatttttgtctttg
agtttgattatatagtggattacattgatggatttctgtatattaaatca
tccctgcatttctgggattaagcctacttgatcattttggatgatggttt
ggatgtgttcttggattcagttcgtggggattttattgagtatttttgca
tcgatgttcataagggaaattggtctgaaattgtctttctttgttgggtt
ttattgtggtttatgtatcagagtaattgtggctcatagaatgaattggg
tagagtactttctgtttctgttttttttttttttccgaatagtttgagga
gaattggaattaggtcttttttgaaggtctgataaaactctgccctaaac
ccatctggtccggggatttatttggttgggaaactattaatgactgcttc
tatttctttagggaaaatggaactgtttagatcattaatctgttcctcat
gtaactttagtacctggtatctgtctaggaaatttgtccatttcacccag
gttttccagttttgttgagtatagccttttgtagtaggatctgttgatgt
tttggatttcctcaggttctgttgttatgtttcccttttcatatctgatt
ttgttaattagtatactgtccttgtgccctctagtgagtctggctaaggg
tttatctatcttgttgattttctcaagaactacctcctgggattgtttga
ttctttgaatagtcctcattttccacttggttgatttcagccctaagatt
tatgatttcctgcagtctactccctcttgggtgaatttgcttcctttttt
tctagatcttttaggtggtgatgtcaggctgctagggtattttctctcaa
ctttcttcttggaggcactcagagctatgagttcctcttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5788246_5788856
seq2: B6Ng01-175G09.b_583_1184

seq1  TCTGACTAGTTGTTATAGTTGTCTCTGGTTAGAGCTTGTTCCTCGGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTAGTTGTTATAGTTGTCTCTGGTTAGAGCTTGTTCCTCGGGTGA  50

seq1  CTCTGTTAGCCTCTATCAGCAGACCTGGGAGACTACCTCTCTCTTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTAGCCTCTATCAGCAGACCTGGGAGACTACCTCTCTCTTTAGTT  100

seq1  TCAGTGGTCAGAGTATTCTCTGCAAGCAAGCTCTCTTCTTGCAGGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTCAGAGTATTCTCTGCAAGCAAGCTCTCTTCTTGCAGGGAAGG  150

seq1  TGCCCAGATATCTGGTGTTCGAATCTGCCTCCTGGCAGAATTTGTGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGATATCTGGTGTTCGAATCTGCCTCCTGGCAGAATTTGTGATCC  200

seq1  ACTCAGCAGAGGACTTAGGATCCCGTGGGAGATCCTGTGTGGGTCCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAGAGGACTTAGGATCCCGTGGGAGATCCTGTGTGGGTCCTTGT  250

seq1  GAGTGTCCGGAGACTCCAGGGGCAAGGCACCCCGGTGCTGGAGTGGCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCGGAGACTCCAGGGGCAAGGCACCCCGGTGCTGGAGTGGCCCG  300

seq1  GATGGGACTTGTGCCCCTGATCAGGCCAGGTTATCTGCTTCCCTAGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTTGTGCCCCTGATCAGGCCAGGTTATCTGCTTCCCTAGTTAA  350

seq1  TGCAGTCTCAGGTCCCGCACAATTGAATTGGAGCAGATGCTGTGTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCAGGTCCCGCACAATTGAATTGGAGCAGATGCTGTGTTCCAA  400

seq1  TCACCAGAGGTCTTAGGATCCCGTGGGGAATCCTCTGTGGGTCCTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGGTCTTAGGATCCCGTGGGGAATCCTCTGTGGGTCCTTGCAG  450

seq1  GTGTCCAGAGACTCTGCTGGCAAGTCACCCTGTTGCTGGAGTGGACCGGA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GTGTCCAGAGACTCTGCTGGCAAGTCACCCTGTTGCTGGAGT-GACCGG-  498

seq1  ATTCCATATTCTCTTCTATACACTGTCTTTACA-TCCCCTCACTATAATT  549
      ||||||||||||||||||||||||||||||||| |||||||||||||  |
seq2  ATTCCATATTCTCTTCTATACACTGTCTTTACATTCCCCTCACTATA--T  546

seq1  TCACTCTG-CATGTTCCATTATCCCCTTTAATGCTTTAAACAACTGTGTA  598
      |||||||| |||||  |||||||||  |||||||||| ||||||   |||
seq2  TCACTCTGCCATGT--CATTATCCC--TTAATGCTTT-AACAACCTGGTA  591

seq1  CTATCCAAAGTTC  611
      |||||  ||||||
seq2  CTATC--AAGTTC  602

seq1: chr13_15331141_15331580
seq2: B6Ng01-175G09.g_613_1051 (reverse)

seq1  CTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAAAAACGGGAGAG  50
      ||||||||  |||||||||||||||||||||||||||| |||   |||||
seq2  CTAAGAGG--AACTCATAGCTCTGAGTGCCTCCAAGAAGAAAGTTGAGAG  48

seq1  AGCACATACTAGCAGCTTGACAACA-CATCTAAAAGCTCTAGAAAAAAAG  99
      |  | |  |||||||| ||||| || || ||||||| |||||||||||||
seq2  AAAATACCCTAGCAGCCTGACATCACCACCTAAAAGATCTAGAAAAAAAG  98

seq1  GAAGCAAATTCACCCAAGA-GGAGTAGACGGCAGGAAATAATCAAACTCA  148
      ||||||||||||||||||| ||||||||| ||||||||| || || || |
seq2  GAAGCAAATTCACCCAAGAGGGAGTAGACTGCAGGAAATCATAAATCTTA  148

seq1  GGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAAC  198
      ||| |||||||||||||||||||  ||  || |||||||||||||| || 
seq2  GGGCTGAAATCAACCAAGTGGAA--AATGAGGACTATTCAAAGAATCAAA  196

seq1  CAA-ACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCT  247
      |||  | ||||| | |||| ||||||||||||||||||||||||||||||
seq2  CAATCCCAGGAGGTAGTTC-TTGAGAAAATCAACAAGATAGATAAACCCT  245

seq1  TAGCTAGACTCACTAGAGGGCACAGAGACAAAATCCTAATTAACAAAATC  297
      |||| |||||||||||||||||||  ||||  || |||||||||||||||
seq2  TAGCCAGACTCACTAGAGGGCACAAGGACAGTATACTAATTAACAAAATC  295

seq1  AGAACTGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC  347
      |||  |||||||||| ||||||||||||| ||||| ||||||||||||| 
seq2  AGATATGAAAAGGGAAACATAACAACAGAACCTGAGGAAATCCAAAACAT  345

seq1  CATCAGATCATTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGG  397
      || |||||| | ||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATCCTACTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGG  395

seq1  ACGAAATGGACAAATTT-CTGGACAGATACCAGGTACCAAAGTT  440
        ||||||||||||||| || |||||||||||||||| ||||||
seq2  GTGAAATGGACAAATTTCCTAGACAGATACCAGGTACTAAAGTT  439