BAC Information

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BAC

Clone NameB6Ng01-175G18
Chromosome13 (Build37)
Map Location 55,535,239 - 55,536,011
singlet/doubletsinglet
Overlap genenone
Upstream geneThoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12
Downstream geneGprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G18.bB6Ng01-175G18.g
ACCGA003231GA003232
length989892
definitionB6Ng01-175G18.b B6Ng01-175G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccttctgtttatagagccattacttgtttgcagagtgggactcc
tgcacttctgtaggtgtcacacctgaccagcaccaagttctgtttacccc
actgcctggacacagtcatgtgtcacttggtagggacacatccccagagt
caggcattggtagctagctgacagtcaatacgtggatgcctcagaatgta
cctgtgcaacctaagacagccactaagtcacagactgtgaaggggtcctc
aaccaaagtgctgttatgcagtacattctctcacgccctactgtctcgcc
agcaagaacacacgcgtgagaaaccagatccttctgcagcaactttatta
caccaatttcaacatgaagaggaagatcccaagcaccaaaaaggcactgt
ttatatagaccttagtgtggcgtgtccacacctgattggctgctctccca
gagcctcatcaccacgccccgggatgggccgtgacttggcacgaaaacac
tctcacacatgcgcacattgcttgtttaccaattaggccacgcaggcaca
gtagaaaccgcttcccacatctccccctttttgttttattaaaacaaggc
tggtctaggcttctgcagttacacccatctgctgtggcccctgttttagg
tcgttcctctaatgtcacagccttacctatacacctgcacagctctcctg
tctgcatgcggcaggtgcatcaaaaggccaggatgttgattaatctatgg
ccagattttgattgctgcaaacaagcctcatgggtgaaggtagaggtctg
atccccagtgtgcaagcataggggccctacacaaaaccatcccttgggct
catcacccagagaagttcttgggccagctcccgtgtcgtttctcctgggg
gaaggaaactaggacactaaacccttcatgcaatcagatgtgccttccac
aggatgccaacagcaagctatccttctgtgcagtgctta
gaattcctcatgcaaatgaggcatccttagcaccctggccctagccccat
agatcttatgtacctcacaaaggtttaaatggcccttatcccctctcccc
caattaaatgagcttctcaatgaagcctgcctcccaagagtctgttctct
tcagctcactcaactcctgaggtgtcagaatcccccagcctcactttctc
tctctgactgcctatgggtgattacagatgatcacaccattatggagact
gagtgtggtcacaccattaggaagattgagggttgtcacaccattgggga
gattgaaggtggtcacaccatttagagactggggcagcaagggggaatga
cactgtggtggtttcaatatgcttggcccagggagtggaactattaagag
gtgtggccttgttgaagtaggtgtggccttgtggtgtgtcactgtggttt
tgggctttttttattggatattttctttatttgcatttcaagtgttatcc
cctttcccagttttccccccctcctagaaactccctacccctacccctgc
ttctataagggtgttcctccacccacccacactcccaccttcccaccctc
catttcctttacactggggcatctattgagccttcataggaccaaggatc
tctcctttccattgatgcctgacaaggccatcctctgctccatatgcagc
tgtagccatgtgtactccgtggttgatggcttagtctctaggagctctgg
gggttctggttggctatattgtgttctttctatggggttgcaaacctctt
tcagcttcctttcagtcctttttctaactcctccattggggaccccgagt
tcagtccaattgattggctgcatgggctttaaaaccctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55535239_55536011
seq2: B6Ng01-175G18.b_41_813

seq1  GAATTCCCTTCTGTTTATAGAGCCATTACTTGTTTGCAGAGTGGGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTGTTTATAGAGCCATTACTTGTTTGCAGAGTGGGACTCC  50

seq1  TGCACTTCTGTAGGTGTCACACCTGACCAGCACCAAGTTCTGTTTACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTCTGTAGGTGTCACACCTGACCAGCACCAAGTTCTGTTTACCCC  100

seq1  ACTGCCTGGACACAGTCATGTGTCACTTGGTAGGGACACATCCCCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGGACACAGTCATGTGTCACTTGGTAGGGACACATCCCCAGAGT  150

seq1  CAGGCATTGGTAGCTAGCTGACAGTCAATACGTGGATGCCTCAGAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTGGTAGCTAGCTGACAGTCAATACGTGGATGCCTCAGAATGTA  200

seq1  CCTGTGCAACCTAAGACAGCCACTAAGTCACAGACTGTGAAGGGGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCAACCTAAGACAGCCACTAAGTCACAGACTGTGAAGGGGTCCTC  250

seq1  AACCAAAGTGCTGTTATGCAGTACATTCTCTCACGCCCTACTGTCTCGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTGCTGTTATGCAGTACATTCTCTCACGCCCTACTGTCTCGCC  300

seq1  AGCAAGAACACACGCGTGAGAAACCAGATCCTTCTGCAGCAACTTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACACACGCGTGAGAAACCAGATCCTTCTGCAGCAACTTTATTA  350

seq1  CACCAATTTCAACATGAAGAGGAAGATCCCAAGCACCAAAAAGGCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTTCAACATGAAGAGGAAGATCCCAAGCACCAAAAAGGCACTGT  400

seq1  TTATATAGACCTTAGTGTGGCGTGTCCACACCTGATTGGCTGCTCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGACCTTAGTGTGGCGTGTCCACACCTGATTGGCTGCTCTCCCA  450

seq1  GAGCCTCATCACCACGCCCCGGGATGGGCCGTGACTTGGCACGAAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATCACCACGCCCCGGGATGGGCCGTGACTTGGCACGAAAACAC  500

seq1  TCTCACACATGCGCACATTGCTTGTTTACCAATTAGGCCACGCAGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACATGCGCACATTGCTTGTTTACCAATTAGGCCACGCAGGCACA  550

seq1  GTAGAAACCGCTTCCCACATCTCCCCCTTTTTGTTTTATTAAAACAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACCGCTTCCCACATCTCCCCCTTTTTGTTTTATTAAAACAAGGC  600

seq1  TGGTCTAGGCTTCTGCAGTTACACCCATCTGCTGTGGCCCCTGTTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAGGCTTCTGCAGTTACACCCATCTGCTGTGGCCCCTGTTTTAGG  650

seq1  TCGTTCCTCTAATGTCACAGCCTTACCTATACACCTGCACAGCTCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCTCTAATGTCACAGCCTTACCTATACACCTGCACAGCTCTCCTG  700

seq1  TCTGCATGCGGCAGGTGCATCAAAAGGCCAGGATGTTGATTAATCTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGCGGCAGGTGCATCAAAAGGCCAGGATGTTGATTAATCTATGG  750

seq1  CCAGATTTTGATTGCTGCAAACA  773
      |||||||||||||||||||||||
seq2  CCAGATTTTGATTGCTGCAAACA  773