BAC Information

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BAC

Clone NameB6Ng01-175N02
Chromosome13 (Build37)
Map Location 105,949,228 - 105,950,114
singlet/doubletsinglet
Overlap geneRnf180
Upstream gene2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N02.bB6Ng01-175N02.g
ACCGA003523GA003524
length870885
definitionB6Ng01-175N02.b B6Ng01-175N02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccattttttaatggagttatttgaat
ttctggagtccagctccttgagctctttgtatatattggatattagtccc
ctatcagatttaggattggtaaatatcctttcccaatctgttggtggcct
ttttatcttattgacagtgtcttactactcagctattaaaaacaatgaat
ttatgaaattcttggacaaatggatgtatctggaggatatcatccttagt
gaggtaacccaatcacaaaagaagtcattagatatgcactcactgattag
tggatattagcccagaaacatagaacaagatacaattttcaaaacacaag
aaaatcaagaagaggaaagaccaatggatggattcctccttagaaaaggg
aacaaaatacccatgaaaggagttacagagacaaagtttggagcgaagaa
gaaaggatagactatccagagactaccccacctagggatccatcccataa
tcagccaccaaacccagaaactattgcatatgccagcaagattttgctga
agggaccctggtacagctgtctcatatgaggctatgccagtgcctggcaa
atacagaagtggatgctcacagtcatctataggatggaacacaggacccc
caatgaagaagctagagaaagtacccaaggagctgaaggggtctgcaacc
ctataggtggaacaacaatatgaacttaccagtaccccctgagctcgtgt
ctctagctgcatttgtagcagaagacggcctagtcagccatcactgggaa
gagaggccccttggtattgcaaactttatatgccccagtacaggggactg
ccagggccaagaagtgggag
gaattcaatatggagcttctttatatttttctatggtgaggagatttaaa
tacaaattatcagatagcttccatctgcccaaatatgtgagtatgttaca
cagaagtacaagcatcattttgaatagttctccctcacacacatatacga
gtgggttctggaggactagcttaatatgactgaaaaccttgtcagtttga
cactattaaggtggaacactataaaggaaactattgcctagaaatggaag
gtacctcacagggacatctatgaccgtcagctggtcagcacagctggact
tgctaaagcacacttttgttttatactctactagactatctgcatttctt
ttcaggaaatattattggttatatatataaatacacaaagtgtatgtttg
tgagaagaaagtgattagaaagatgtctgcttatttagtacagatcattt
cataagctacaaaggaatgtgccaatgatgaaaatgttgagttcaaaata
gttgatgtgagttgctgtggttaggaaacttgcaacaaagttatattttc
acccggaaacattaatatttagatctagaggttggaatgtttattttctc
tcacaagctccctcttcttaccccatctctttctttctaaaccaaattca
gaaatgaagctggactgtaacttcttagggagcctttgaacacagcacag
gtggcgtggggtgtggaattgtgtggtgtaaccataagaccatagccaac
ttgtcttaaaaggaacctgctttgtacaaatgtgatttcaggtgaaagta
attaggaatgaagggtaaaattacattagaggaaaacttatgctccttaa
taacacagtaaaaaggttaaagttatcatcttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105949228_105950114
seq2: B6Ng01-175N02.g_66_950

seq1  GAATTCAATATGGAGCTTCTTTATATTTTTCTATGGTGAGGAGATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGGAGCTTCTTTATATTTTTCTATGGTGAGGAGATTTAAA  50

seq1  TACAAATTATCAGATAGCTTCCATCTGCCCAAATATGTGAGTATGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTATCAGATAGCTTCCATCTGCCCAAATATGTGAGTATGTTACA  100

seq1  CAGAAGTACAAGCATCATTTTGAATAGTTCTCCCTCACACACATATACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACAAGCATCATTTTGAATAGTTCTCCCTCACACACATATACGA  150

seq1  GTGGGTTCTGGAGGACTAGCTTAATATGACTGAAAACCTTGTCAGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCTGGAGGACTAGCTTAATATGACTGAAAACCTTGTCAGTTTGA  200

seq1  CACTATTAAGGTGGAACACTATAAAGGAAACTATTGCCTAGAAATGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAAGGTGGAACACTATAAAGGAAACTATTGCCTAGAAATGGAAG  250

seq1  GTACCTCACAGGGACATCTATGACCGTCAGCTGGTCAGCACAGCTGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCACAGGGACATCTATGACCGTCAGCTGGTCAGCACAGCTGGACT  300

seq1  TGCTAAAGCACACTTTTGTTTTATACTCTACTAGACTATCTGCATTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGCACACTTTTGTTTTATACTCTACTAGACTATCTGCATTTCTT  350

seq1  TTCAGGAAATATTATTGGTTATATATATAAATACACAAAGTGTATGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAATATTATTGGTTATATATATAAATACACAAAGTGTATGTTTG  400

seq1  TGAGAAGAAAGTGATTAGAAAGATGTCTGCTTATTTAGTACAGATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAAGTGATTAGAAAGATGTCTGCTTATTTAGTACAGATCATTT  450

seq1  CATAAGCTACAAAGGAATGTGCCAATGATGAAAATGTTGAGTTCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTACAAAGGAATGTGCCAATGATGAAAATGTTGAGTTCAAAATA  500

seq1  GTTGATGTGAGTTGCTGTGGTTAGGAAACTTGCAACAAAGTTATATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTGAGTTGCTGTGGTTAGGAAACTTGCAACAAAGTTATATTTTC  550

seq1  ACCCGGAAACATTAATATTTAGATCTAGAGGTTGGAATGTTTATTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGAAACATTAATATTTAGATCTAGAGGTTGGAATGTTTATTTTCTC  600

seq1  TCACAAGCTCCCTCTTCTTACCCCATCTCTTTCTTTCTAAACCAAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCTCCCTCTTCTTACCCCATCTCTTTCTTTCTAAACCAAATTCA  650

seq1  GAAATGAAGCTGGACTGTAACTTCTTAGGGAGCCTTTGAACACAGCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGCTGGACTGTAACTTCTTAGGGAGCCTTTGAACACAGCACAG  700

seq1  GTGGCGTGGGGTGTGGAATTGTGTGGTGTAACCATAAGACCATAGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGTGGGGTGTGGAATTGTGTGGTGTAACCATAAGACCATAGCCAAC  750

seq1  TTGTCTT-AAAGGAACCTGCTTTGTACAAAATGTGATTTCAGGTGAAAGT  799
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGTCTTAAAAGGAACCTGCTTTGTAC-AAATGTGATTTCAGGTGAAAGT  799

seq1  AATTAGGAATGAAGGGTAAAAATTACATTAGAGGAAAACTTATGCCCTTA  849
      ||||||||||||||||| ||||||||||||||||||||||||||| | | 
seq2  AATTAGGAATGAAGGGT-AAAATTACATTAGAGGAAAACTTATGCTCCTT  848

seq1  AATAACACAGTAAAAAGGTTAAAAGTTATCATCTTCTG  887
      |||||||||||||||||||| |||||||||||||||||
seq2  AATAACACAGTAAAAAGGTT-AAAGTTATCATCTTCTG  885