BAC Information

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BAC

Clone NameB6Ng01-176B19
Chromosome13 (Build37)
Map Location 66,565,680 - 66,612,938
singlet/doubletdoublet
Overlap geneC330014B19Rik
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B19.bB6Ng01-176B19.g
ACCGA003737GA003738
length1,1081,127
definitionB6Ng01-176B19.b B6Ng01-176B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,611,819 - 66,612,938)(66,565,680 - 66,566,792)
sequence
gaattcatagacatagggcactatgatatgataaatattttattcatgaa
agttaataaagattgttttatctctgaatgccatccttgaactagattac
agtcctattgagaaagactgctataaaataaccttgaatttgtatttcca
cagatacataaaaaagcatgacttaaaccatataaaatatataacagatt
ctccttaaaattttttattatttaaatgcattttatgtatcaaacatctt
aataatactgaatattttgagaaccaaataatacatcaaaattttgttca
actttcatattcctgtccttttatactttaaaaatatcattaatgcatat
ttaataatatccatacctgatgatcctatgtctacttttgagtactgcct
gcctctgcctcccgagtgctgggattaaaggtgtgagccaccacgtctgg
ccttaatgtcactttttattttgagatgatgattatctaaatttttcatt
ccatgttaaatttgagaaactttcagatattgtccaattgttatgctcat
ttttttcataatttttgttgatgtaattgagatttaagctgtacattcag
attattttatactggtatattccttgtcctttcagtgtatcatggctatc
aattatttgtattcattttttttctagcagtttgctaaagttgctgtcac
ttgtaagtatatatttttggggaagattgattattttacaacgtttaaat
gctgtagataacatacaatatgtagtagagaaagtaacaaatacagctcc
tgggccctctgggccaaccaaagctgccctgagcagactgctatgccatg
tggacctccactctcccatcacctctcctcaaacctagtcagactcctga
accatacaggacccgaaacatacagcctaatgatatccatcagaatcctg
ccacaccaggaaaattgaagttcaccctcttcccaatatctgctacacaa
gacatctagggattaaaccatcagtttgctaaaggtcctcaaaaaacaaa
tcacaaagccttggcaatatgacactcaagcaatctacctcactacagca
agctcaga
gaattctttagtgtccaaagacataaaggagcagatctgagcatctgtat
ctcagggtcgggatcttttgctgggtgggcagctttgtccctgtgtcacc
cagagccgtccacaccatcggacattgttttattttgctcttgagatgca
tggggtgtgtgacagtaaaacagaaactgtaggagtccaccaaaagaccc
tctttcacaaagaccacaaacagacattgttgcaaaccacaagaggtttt
tttaattgatccaacacgttggggaacacccttcaacacacaggcaagag
aaaaggccccaaacaaacaaagaacacactttttattccttggaaggggc
aggtttaggcaacaggtctaactggcttattctaattggtatagcaagta
accctttcaggcattggttggtttgaatagagtgactacctttggcctag
tccctcactccacctgcccttatggtttttctcagaattgtttagtcggc
ctgcttccttatctggctctgcacttggcctgctagtatcttttggaaag
tcccttcagagggaaaaagggctaggtggtcttgaatttattttggatta
tacaaaaccaaacccttgtctccactgaagcccacatggaatctaaagaa
actacaggtggcataaaccagctacatttccacccctccaactccagtgg
acactggctgacacctctgtgcagagcccgtaggtcctagatcccacagt
aactcgggcaggtatgggacaggtggttcaatgaagacagacttgggtgt
cctctcttttggagagcttagctaaagaccaggcacctgggctgggagat
aagggtcagccaatgatggcttccaaagcctgaggacctatgcttgcaaa
ctcagtcctggggaggcagagacaggcaaattccttggactttgctggtc
catcttaatgggctagcccttggctctcagtgaactttcatgtgtcaatc
atgggacgacttctgagctgggttcttcttctctaactttattatggtct
acagggagtgttgaataaaggatcaccagttttgttttttcttcaaaata
attataataaattataataaaacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66611819_66612938
seq2: B6Ng01-176B19.b_44_1151 (reverse)

seq1  TCTGAGCTTGCTGTAGTGGGGTAGATTTGCTTTGGAAGTGTCATATTGCC  50
      |||||||||||||||||| |||||| ||||||    ||||||||||||||
seq2  TCTGAGCTTGCTGTAGTGAGGTAGA-TTGCTT---GAGTGTCATATTGCC  46

seq1  AAGGCTTTTGTTGATTTTGTTTTTTTGAGGGCCTTTAGCAAACTGGATGG  100
      ||||||||   ||||||   |||||||||| ||||||||||||| |||||
seq2  AAGGCTTT--GTGATTT--GTTTTTTGAGGACCTTTAGCAAACT-GATGG  91

seq1  TTTTAATCCCTAGATGTTCTTGTTGTAGCAGATATTGGGAAGAGGGTGAA  150
       ||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  -TTTAATCCCTAGATG-TCTTG-TGTAGCAGATATTGGGAAGAGGGTGAA  138

seq1  CTTCAATTTTCCTGGTGTGGCAGGATTCTGATGGATATCATTAGGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTTCCTGGTGTGGCAGGATTCTGATGGATATCATTAGGCTGTA  188

seq1  TGTTTCGGGTCCTGTATGGTTCAGGAGTCTGACTAGGTTTGAGGAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGGGTCCTGTATGGTTCAGGAGTCTGACTAGGTTTGAGGAGAGGT  238

seq1  GATGGGAGAGTGGAGGTCCACATGGCATAGCAGTCTGCTCAGGGCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGAGTGGAGGTCCACATGGCATAGCAGTCTGCTCAGGGCAGCTT  288

seq1  TGGTTGGCCCAGAGGGCCCAGGAGCTGTATTTGTTACTTTCTCTACTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCCCAGAGGGCCCAGGAGCTGTATTTGTTACTTTCTCTACTACA  338

seq1  TATTGTATGTTATCTACAGCATTTAAACGTTGTAAAATAATCAATCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATGTTATCTACAGCATTTAAACGTTGTAAAATAATCAATCTTCC  388

seq1  CCAAAAATATATACTTACAAGTGACAGCAACTTTAGCAAACTGCTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATATATACTTACAAGTGACAGCAACTTTAGCAAACTGCTAGAAA  438

seq1  AAAAATGAATACAAATAATTGATAGCCATGATACACTGAAAGGACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATACAAATAATTGATAGCCATGATACACTGAAAGGACAAGGA  488

seq1  ATATACCAGTATAAAATAATCTGAATGTACAGCTTAAATCTCAATTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCAGTATAAAATAATCTGAATGTACAGCTTAAATCTCAATTACAT  538

seq1  CAACAAAAATTATGAAAAAAATGAGCATAACAATTGGACAATATCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAATTATGAAAAAAATGAGCATAACAATTGGACAATATCTGAAA  588

seq1  GTTTCTCAAATTTAACATGGAATGAAAAATTTAGATAATCATCATCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAATTTAACATGGAATGAAAAATTTAGATAATCATCATCTCAA  638

seq1  AATAAAAAGTGACATTAAGGCCAGACGTGGTGGCTCACACCTTTAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGTGACATTAAGGCCAGACGTGGTGGCTCACACCTTTAATCCC  688

seq1  AGCACTCGGGAGGCAGAGGCAGGCAGTACTCAAAAGTAGACATAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCGGGAGGCAGAGGCAGGCAGTACTCAAAAGTAGACATAGGATCA  738

seq1  TCAGGTATGGATATTATTAAATATGCATTAATGATATTTTTAAAGTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGGATATTATTAAATATGCATTAATGATATTTTTAAAGTATAA  788

seq1  AAGGACAGGAATATGAAAGTTGAACAAAATTTTGATGTATTATTTGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGAATATGAAAGTTGAACAAAATTTTGATGTATTATTTGGTTC  838

seq1  TCAAAATATTCAGTATTATTAAGATGTTTGATACATAAAATGCATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATTCAGTATTATTAAGATGTTTGATACATAAAATGCATTTAAA  888

seq1  TAATAAAAAATTTTAAGGAGAATCTGTTATATATTTTATATGGTTTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAATTTTAAGGAGAATCTGTTATATATTTTATATGGTTTAAGT  938

seq1  CATGCTTTTTTATGTATCTGTGGAAATACAAATTCAAGGTTATTTTATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTTTTATGTATCTGTGGAAATACAAATTCAAGGTTATTTTATAG  988

seq1  CAGTCTTTCTCAATAGGACTGTAATCTAGTTCAAGGATGGCATTCAGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCTCAATAGGACTGTAATCTAGTTCAAGGATGGCATTCAGAGA  1038

seq1  TAAAACAATCTTTATTAACTTTCATGAATAAAATATTTATCATATCATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATCTTTATTAACTTTCATGAATAAAATATTTATCATATCATAG  1088

seq1  TGCCCTATGTCTATGAATTC  1120
      ||||||||||||||||||||
seq2  TGCCCTATGTCTATGAATTC  1108

seq1: chr13_66565680_66566792
seq2: B6Ng01-176B19.g_69_1195

seq1  GAATCCTTTAGTGTCCAAAGACATAAAGGAGCAGATCTGAGCATCTGTAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTGTCCAAAGACATAAAGGAGCAGATCTGAGCATCTGTAT  50

seq1  CTCAGGGTCGGGATCTTTTGCTGGGTGGGCAGCTTTGTCCCTGTGTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTCGGGATCTTTTGCTGGGTGGGCAGCTTTGTCCCTGTGTCACC  100

seq1  CAGAGCCATCCACACCATCGGACATTGTTTTATTTTGCTCTTGAGATGCA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCGTCCACACCATCGGACATTGTTTTATTTTGCTCTTGAGATGCA  150

seq1  TGGGGTGTGTGACAGTAAAACAGAAACTGTAGGAGTCCACCAAAAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTGACAGTAAAACAGAAACTGTAGGAGTCCACCAAAAGACCC  200

seq1  TCTTTCACAAAGACCACAAACAGACATTGTTGCAAACCACAAGAGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACAAAGACCACAAACAGACATTGTTGCAAACCACAAGAGGTTTT  250

seq1  TTTAATTGATCCAACACGTTGGGGAACACCCTTCAACACACAGGCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGATCCAACACGTTGGGGAACACCCTTCAACACACAGGCAAGAG  300

seq1  AAAAGGCCCCAAACAAACAAAGAACACACTTTTTATTCCTTGGAAGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCCCAAACAAACAAAGAACACACTTTTTATTCCTTGGAAGGGGC  350

seq1  AGGTTTAGGCAACAGGTCTAACTGGCTTATTCTAATTGGTATAGCAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGGCAACAGGTCTAACTGGCTTATTCTAATTGGTATAGCAAGTA  400

seq1  ACCCTTTCAGGCATTGGTTGGTTTGAATAGAGTGACTACCTTTGGCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCAGGCATTGGTTGGTTTGAATAGAGTGACTACCTTTGGCCTAG  450

seq1  TCCCTCACTCCACCTGCCCTTACGGTTTTTCTCAGCATTGTTTAGTCGGC  500
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TCCCTCACTCCACCTGCCCTTATGGTTTTTCTCAGAATTGTTTAGTCGGC  500

seq1  CTGCTTCCTTATCTGGCTCTGCACTTGGCCTGCTAGTATCTTTTGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTTATCTGGCTCTGCACTTGGCCTGCTAGTATCTTTTGGAAAG  550

seq1  TCCCTTCAGAGGGAAAAAGGGCTAGGTGGTCTTGAATTTATTTTGGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAGAGGGAAAAAGGGCTAGGTGGTCTTGAATTTATTTTGGATTA  600

seq1  TACAAAACCAAACCCTTGTCTCCACTGAAGCCCACAGGGAATCTAAAGAA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACAAAACCAAACCCTTGTCTCCACTGAAGCCCACATGGAATCTAAAGAA  650

seq1  ACTACAGGTGGCATAAACCAGCTACATTTCCACCCCTCCAACTCCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGTGGCATAAACCAGCTACATTTCCACCCCTCCAACTCCAGTGG  700

seq1  ACACTGGCTGACACCTCTGTGCAGAGCCCGTAGGTCCTAGATCCCACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTGACACCTCTGTGCAGAGCCCGTAGGTCCTAGATCCCACAGT  750

seq1  AACTCGAGCAGGTATGGGACAGGTGGTTCAATGAAGACAGACTTGGGTGT  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGGCAGGTATGGGACAGGTGGTTCAATGAAGACAGACTTGGGTGT  800

seq1  CCTCTCTTTTGGAGAGCTTAGCTAAAGACCAGACACCTGGGCTGGGAGAT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTCTCTTTTGGAGAGCTTAGCTAAAGACCAGGCACCTGGGCTGGGAGAT  850

seq1  AAGGGTCAGCCAATGATGGCTTCCAAAGCCTGAGGACCTATGCTTGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGCCAATGATGGCTTCCAAAGCCTGAGGACCTATGCTTGCAAA  900

seq1  CTCAGTCCTGGGGAGGCAGAGACAGGCAAA-TCCCTGGACCTTGCTGGTC  949
      |||||||||||||||||||||||||||||| ||| ||||| |||||||||
seq2  CTCAGTCCTGGGGAGGCAGAGACAGGCAAATTCCTTGGACTTTGCTGGTC  950

seq1  CATCTTAATGGGCTAG-CCTTGGCTCTCAGTGAACTTTCATGTGTCAATC  998
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCTTAATGGGCTAGCCCTTGGCTCTCAGTGAACTTTCATGTGTCAATC  1000

seq1  ATGGGACGAC-TCTGAGCT-GGTTC-TCTCCTCTAACTTTA-TATGGTCT  1044
      |||||||||| |||||||| ||||| ||| ||||||||||| ||||||||
seq2  ATGGGACGACTTCTGAGCTGGGTTCTTCTTCTCTAACTTTATTATGGTCT  1050

seq1  ACA-GGAGTGT--GATAAA-GATCACCAGGTTTGTTTT---CTCAAAATA  1087
      ||| |||||||   ||||| ||||||||| ||||||||    ||||||||
seq2  ACAGGGAGTGTTGAATAAAGGATCACCAGTTTTGTTTTTTCTTCAAAATA  1100

seq1  ATAATAATAAATAATAAT-AAACACCA  1113
      || ||||||||| ||||| ||||||||
seq2  ATTATAATAAATTATAATAAAACACCA  1127