BAC Information

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BAC

Clone NameB6Ng01-176E09
Chromosome13 (Build37)
Map Location 42,273,653 - 42,405,467
singlet/doubletdoublet
Overlap geneHivep1, Edn1
Upstream geneLOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272
Downstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176E09.bB6Ng01-176E09.g
ACCGA003852GA003853
length2671,186
definitionB6Ng01-176E09.b B6Ng01-176E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,405,201 - 42,405,467)(42,273,653 - 42,274,841)
sequence
aaacccacggttttcatcagccaagaagctaatccccaggggaaaaggaa
gcactcattagtgggctcctctctcccccatccctgccaaacgtcaccgc
atccctcttaggctctactctcctgagactgaagccctgccggaccctta
agagtaaagagaaaaatctgtcgcaagcacgcaagcgcactgccagaaag
cagagttttttggaaacccagaaggaagtctgactgaaaagaatgagctg
cctgcgacccccccccc
gaattcctcagtactgtttgcccagcttccctgtgtgtgatagcctcaca
tgttcatagagcacacatggatgctagagtttacctcagctcattattac
tgactggaataaagccttcattcacattacacaggtccttaggtacatcc
cttatctgtcccaaggtcccctatcatgttattccatcactttctgggtc
ctgtaatatgtctattgtagtttctttttcaatctcgataatgagtattg
cagaatacttttcattttggctcttatggtgtattttcaaattagcctga
ggttgtacatttggaaggaggtaagggtgatgtttgcagtcaagggacac
atgatgtcatactggcctctatccctgggctaaggtggtacctattatga
cagtgtgctctaagtttaactgtttttccctccacaaatattaaatactt
tgaaaccatgcatattctgtttatttaatgcagggcttatcagtggcatc
actatggtgtgttattaactgaacttttctatggaaatgctttctttact
cccacttgtatctgtggactcagaatgaactgactctgaaagacatcgcc
aggtcctgtggttatcagtgtctcgcttgggttccaacattggctataga
cagtaagcccttcaggtctgatccaatccaatcatctttcctatgcagtt
cctttctttaggatctacccccaagaagctctagctccagagttacgcat
ttctgtaaaagcgtctggtcctttttgctggagaatagaacttaaaaacc
aagacaatatggctgctggctggtgtgctcattgctgttgattgccactt
tgtgcagcaatcagtaggctgaattaggcatgctggcaccacatacctaa
aaacagcacatatctatgataaataaacattctatcctttcctatcccta
gaaatcaccctccaatatttttggtgcatagtttctatagactttttttt
ttctgtaagatttatttttataagaatattattttgccatgtagaaaaaa
ataatatgaaataaatgaatgcttggcagtctgaataaaaaatattctat
tgcatatttggtttcaatttttctgtttccaaaaagtagagtgggctcct
tccatggctaattctccaagagcagtgaatactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42405201_42405467
seq2: B6Ng01-176E09.b_53_319 (reverse)

seq1  GGGGGGGGGGTCGCAGGCAGCTCATTCTTTTCAGTCAGACTTCCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGTCGCAGGCAGCTCATTCTTTTCAGTCAGACTTCCTTCTGG  50

seq1  GTTTCCAAAAAACTCTGCTTTCTGGCAGTGCGCTTGCGTGCTTGCGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAAAAAACTCTGCTTTCTGGCAGTGCGCTTGCGTGCTTGCGACAG  100

seq1  ATTTTTCTCTTTACTCTTAAGGGTCCGGCAGGGCTTCAGTCTCAGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCTTTACTCTTAAGGGTCCGGCAGGGCTTCAGTCTCAGGAGAG  150

seq1  TAGAGCCTAAGAGGGATGCGGTGACGTTTGGCAGGGATGGGGGAGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTAAGAGGGATGCGGTGACGTTTGGCAGGGATGGGGGAGAGAGG  200

seq1  AGCCCACTAATGAGTGCTTCCTTTTCCCCTGGGGATTAGCTTCTTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTAATGAGTGCTTCCTTTTCCCCTGGGGATTAGCTTCTTGGCTG  250

seq1  ATGAAAACCGTGGGTTT  267
      |||||||||||||||||
seq2  ATGAAAACCGTGGGTTT  267

seq1: chr13_42273653_42274841
seq2: B6Ng01-176E09.g_65_1250

seq1  GAATTCCTCAGTACTGTTTGCCCAGCTTCCCTGTGTGTGATAGCCTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTACTGTTTGCCCAGCTTCCCTGTGTGTGATAGCCTCACA  50

seq1  TGTTCATAGAGCACACATGGATGCTAGAGTTTACCTCAGCTCATTATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAGAGCACACATGGATGCTAGAGTTTACCTCAGCTCATTATTAC  100

seq1  TGACTGGAATAAAGCCTTCATTCACATTACACAGGTCCTTAGGTACATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAATAAAGCCTTCATTCACATTACACAGGTCCTTAGGTACATCC  150

seq1  CTTATCTGTCCCAAGGTCCCCTATCATGTTATTCCATCACTTTCTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGTCCCAAGGTCCCCTATCATGTTATTCCATCACTTTCTGGGTC  200

seq1  CTGTAATATGTCTATTGTAGTTTCTTTTTCAATCTCGATAATGAGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATATGTCTATTGTAGTTTCTTTTTCAATCTCGATAATGAGTATTG  250

seq1  CAGAATACTTTTCATTTTGGCTCTTATGGTGTATTTTCAAATTAGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACTTTTCATTTTGGCTCTTATGGTGTATTTTCAAATTAGCCTGA  300

seq1  GGTTGTACATTTGGAAGGAGGTAAGGGTGATGTTTGCAGTCAAGGGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACATTTGGAAGGAGGTAAGGGTGATGTTTGCAGTCAAGGGACAC  350

seq1  ATGATGTCATACTGGCCTCTATCCCTGGGCTAAGGTGGTACCTATTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATACTGGCCTCTATCCCTGGGCTAAGGTGGTACCTATTATGA  400

seq1  CAGTGTGCTCTAAGTTTAACTGTTTTTCCCTCCACAAATATTAAATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCTCTAAGTTTAACTGTTTTTCCCTCCACAAATATTAAATACTT  450

seq1  TGAAACCATGCATATTCTGTTTATTTAATGCAGGGCTTATCAGTGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATGCATATTCTGTTTATTTAATGCAGGGCTTATCAGTGGCATC  500

seq1  ACTATGGTGTGTTATTAACTGAACTTTTCTATGGAAATGCTTTCTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTGTGTTATTAACTGAACTTTTCTATGGAAATGCTTTCTTTACT  550

seq1  CCCACTTGTATCTGTGGACTCAGAATGAACTGACTCTGAAAGACATCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGTATCTGTGGACTCAGAATGAACTGACTCTGAAAGACATCGCC  600

seq1  AGGTCCTGTGGTTATCAGTGTCTCGCTTGGGTTCCAACATTGGCTATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGTGGTTATCAGTGTCTCGCTTGGGTTCCAACATTGGCTATAGA  650

seq1  CAGTAAGCCCTTCAGGTCTGATCCAATCCAATCATCTTTCCTATGCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCCCTTCAGGTCTGATCCAATCCAATCATCTTTCCTATGCAGTT  700

seq1  CCTTTCTTTAGGATCTACCCCCAAGAAGCTCTAGCTCCAGAGTTACGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTAGGATCTACCCCCAAGAAGCTCTAGCTCCAGAGTTACGCAT  750

seq1  TTCTGTAAAAGCGTCTGGTCCTTTTTGCTGGAGAATAGAACTTAAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAAGCGTCTGGTCCTTTTTGCTGGAGAATAGAACTTAAAAACC  800

seq1  AAGACAATATGGCTGCTGGCTGGTGTGCTCATTGCTGTTGATTGCCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATATGGCTGCTGGCTGGTGTGCTCATTGCTGTTGATTGCCACTT  850

seq1  TGTGCAGCAATCAGTAGGCTGAATTAGGCATGCTGGCACCACATACCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCAATCAGTAGGCTGAATTAGGCATGCTGGCACCACATACCTAA  900

seq1  AAACAGCACATATCTATGATAAATAAACATTCTATCCTTTCCTATCCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACAGCACATATCTATGATAAATAAACATTCTATCCTTTCCTAT-CCCT  949

seq1  AGAAATCACCCTCCAATA-TTTTGGTGCATAGTTTCTATAAGAC-TTTTT  998
      |||||||||||||||||| |||||||||||||||||||| |||| |||||
seq2  AGAAATCACCCTCCAATATTTTTGGTGCATAGTTTCTAT-AGACTTTTTT  998

seq1  TTTTCTGTAAGAATTTATTTTTATAAGAATA-TATTTTGCCATGTAG-AA  1046
      ||||||||||| ||||||||||||||||||| ||||||||||||||| ||
seq2  TTTTCTGTAAG-ATTTATTTTTATAAGAATATTATTTTGCCATGTAGAAA  1047

seq1  AAAATAATATTGAAATAAATGAATGCTTGGGAAGTCTGA--TAAAAATA-  1093
      ||||||||| |||||||||||||||||| || |||||||   ||||||| 
seq2  AAAATAATA-TGAAATAAATGAATGCTT-GGCAGTCTGAATAAAAAATAT  1095

seq1  TCTATTGCATATTT-GTTTCTA-TTTTCTGTTTTCAAAAAGTAGAGTGGG  1141
      |||||||||||||| ||||| | |||||||||| ||||||||||||||||
seq2  TCTATTGCATATTTGGTTTCAATTTTTCTGTTTCCAAAAAGTAGAGTGGG  1145

seq1  CTCCTTGTCCATGGCTAATATCTCCCAAGAAGCCAGTGAATACCTGAA  1189
      |||||  |||||||||||| ||| ||||||   ||||||||| |||||
seq2  CTCCT--TCCATGGCTAAT-TCT-CCAAGA--GCAGTGAATA-CTGAA  1186