BAC Information

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BAC

Clone NameB6Ng01-176H06
Chromosome13 (Build37)
Map Location 98,573,855 - 98,676,431
singlet/doubletdoublet
Overlap geneRgnef
Upstream geneLOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176H06.bB6Ng01-176H06.g
ACCGA003983GA003984
length1,064858
definitionB6Ng01-176H06.b B6Ng01-176H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,675,398 - 98,676,431)(98,573,855 - 98,574,709)
sequence
gaattccatctacctacagccagctttaactcttaccaacccacagtcgc
ccatggctctattcccctttctctctcatgttgagttatcttaaacatat
ccaagacagcttaccattttattggaaaaaatatttcattaccattttct
gaaagaacccagtttctcatctctgtgatgttgttattacacccaaaaca
atattgacatttgttacttaaactcaagctgtctgtgtggttgaaaatga
ttgtcttgtaaataatacccttgatgattgttttgtgaaaatagagtcca
aataatttcatatgttgcctttaaatggcatattccttaagagtatttta
actctaaagttcttttgcctctctcttttaatgtacattcttaatattca
atttctttgttgaaaaggcaagtctgaattttctgggtaaaaaaaaaatc
cccattccagagctttctgactgtatccctgtggtaccattttacatatt
ctgcagctgtattttgttcctttggctgagcatagacttttgatggaatg
caggcctctctcctatatggaagcatctctatggatggatggagctatgt
gtttcctcctcatcccatcacggggcgcagagtgtctgctcccttccagg
actttgatgctgagcttgagccctggtccggctgccagcctgacctagct
agctattgtggagttttctgctcgctttactcttcacggttttcagcagc
cactaacgggtctggctttgctccactgtggctctgcgcttctggattta
gaaggccttacctgcttccaccctttcacccagggtttattctggcatct
tgctcatctgttttctctgcagtcttaatggatttatagttctctagtgc
cctagcctgcgtttgtttcacaggaaaaaaaatcctgtcttggggccctg
tgagaagagacttcctaagcttgccattgggctacactggagatgttgac
cattctcagagccttaaatactgcaaagtccagttttcagtcacaatgtt
aagaccattgtcaa
gaattcagaataatgctccctttcaaattaaacatagcgtcaaaggaatc
aatttgattacttttgtgtaaacagtttgggtactgtggaaatttttcac
ctggtgggtatgttcttttcaaaaactccgatcattttttacatcacttt
ataaatcctgatgtctcccaataatacttaaattggctgacttttgtgaa
aggttctagcccctttagccttcactaagatcatattgtgaaatttcaat
tgtgatgtgctggggagatgtttaaacttaagaatgtttctagaatgttc
agtaccatatgattcaattttcagggcccatggagcacagtaaagagttg
atgcgatcctcttcaagtggaaacaataaagtggaaataagagcagtacc
caagaccttctacactcgtggcaatagaaatgccagcctacacggctttg
cttttttatgtttgtttttaaaagagaagcatttcaggcatggagagatg
atggctaggctattaagagccctggcttctctgggttcccttcccagcac
ccatatagcagctcacaaccatctataactccagctcaagggcatcttgc
ttgtttccatgggcaccagacactcgagtggtactttagacagacatgaa
ggcaaaacactcattcatacatataaaggaaaataaaatttaaaactcaa
agagaaacattacagttgttaccagctttcggggagctttgatgctctgc
ttcccgagaagcagtctgcgtgaatctatactttcatttgtacaccttca
atttttaaaataaatgtgggtttgtgcatgtgtgtgtgcacgtgtgtgtg
tgtgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98675398_98676431
seq2: B6Ng01-176H06.b_63_1098 (reverse)

seq1  TTAACATTGTGACTGAAAACTGGACTTTGCAGTATTTAAGGCTCTTGAG-  49
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TTAACATTGTGACTGAAAACTGGACTTTGCAGTATTTAAGGCTC-TGAGA  49

seq1  ATGGTCAACATCTCCAGTGTAG-CCAATGGC-AGCTTAGGGAGTCTCTTC  97
      |||||||||||||||||||||| |||||||| |||||||| |||||||||
seq2  ATGGTCAACATCTCCAGTGTAGCCCAATGGCAAGCTTAGGAAGTCTCTTC  99

seq1  TCACAGGGCCCC-AGACAGGATTTTTTTTCCTGTGAAACAAACGCAGGCT  146
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGCCCCAAGACAGGATTTTTTTTCCTGTGAAACAAACGCAGGCT  149

seq1  AGGGCACTAGAGAACTATAAATCCATTAAAGACTGCAGAGAAAACAGATG  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGGCACTAGAGAACTATAAATCCATT-AAGACTGCAGAGAAAACAGATG  198

seq1  AGCAAGATGCCAGAATAAACCCTGGGTGAAAGGGTGGAAGCAGGTAAGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATGCCAGAATAAACCCTGGGTGAAAGGGTGGAAGCAGGTAAGGC  248

seq1  CTTCTAAATCCAGAAGCGCAGAGCCACAGTGGAGCAAAGCCAGACCCGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAATCCAGAAGCGCAGAGCCACAGTGGAGCAAAGCCAGACCCGTT  298

seq1  AGTGGCTGCTGAAAACCGTGAAGAGTAAAGCGAGCAGAAAACTCCACAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCTGAAAACCGTGAAGAGTAAAGCGAGCAGAAAACTCCACAAT  348

seq1  AGCTAGCTAGGTCAGGCTGGCAGCCGGACCAGGGCTCAAGCTCAGCATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTAGGTCAGGCTGGCAGCCGGACCAGGGCTCAAGCTCAGCATCA  398

seq1  AAGTCCTGGAAGGGAGCAGACACTCTGCGCCCCGTGATGGGATGAGGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGGAAGGGAGCAGACACTCTGCGCCCCGTGATGGGATGAGGAGG  448

seq1  AAACACATAGCTCCATCCATCCATAGAGATGCTTCCATATAGGAGAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATAGCTCCATCCATCCATAGAGATGCTTCCATATAGGAGAGAGG  498

seq1  CCTGCATTCCATCAAAAGTCTATGCTCAGCCAAAGGAACAAAATACAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTCCATCAAAAGTCTATGCTCAGCCAAAGGAACAAAATACAGCT  548

seq1  GCAGAATATGTAAAATGGTACCACAGGGATACAGTCAGAAAGCTCTGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATATGTAAAATGGTACCACAGGGATACAGTCAGAAAGCTCTGGAA  598

seq1  TGGGGATTTTTTTTTTACCCAGAAAATTCAGACTTGCCTTTTCAACAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTTTTTTTTTACCCAGAAAATTCAGACTTGCCTTTTCAACAAAG  648

seq1  AAATTGAATATTAAGAATGTACATTAAAAGAGAGAGGCAAAAGAACTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATATTAAGAATGTACATTAAAAGAGAGAGGCAAAAGAACTTTA  698

seq1  GAGTTAAAATACTCTTAAGGAATATGCCATTTAAAGGCAACATATGAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAATACTCTTAAGGAATATGCCATTTAAAGGCAACATATGAAAT  748

seq1  TATTTGGACTCTATTTTCACAAAACAATCATCAAGGGTATTATTTACAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGACTCTATTTTCACAAAACAATCATCAAGGGTATTATTTACAAG  798

seq1  ACAATCATTTTCAACCACACAGACAGCTTGAGTTTAAGTAACAAATGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATTTTCAACCACACAGACAGCTTGAGTTTAAGTAACAAATGTCA  848

seq1  ATATTGTTTTGGGTGTAATAACAACATCACAGAGATGAGAAACTGGGTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTTTGGGTGTAATAACAACATCACAGAGATGAGAAACTGGGTTC  898

seq1  TTTCAGAAAATGGTAATGAAATATTTTTTCCAATAAAATGGTAAGCTGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAATGGTAATGAAATATTTTTTCCAATAAAATGGTAAGCTGTC  948

seq1  TTGGATATGTTTAAGATAACTCAACATGAGAGAGAAAGGGGAATAGAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATGTTTAAGATAACTCAACATGAGAGAGAAAGGGGAATAGAGCC  998

seq1  ATGGGCGACTGTGGGTTGGTAAGAGTTAAAGCTGGCTG  1034
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGACTGTGGGTTGGTAAGAGTTAAAGCTGGCTG  1036

seq1: chr13_98573855_98574709
seq2: B6Ng01-176H06.g_64_920

seq1  GAATTCAGAATAATGCTCCCTTTCAAATTAAACATAGCGTCAAAGGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAATGCTCCCTTTCAAATTAAACATAGCGTCAAAGGAATC  50

seq1  AATTTGATTACTTTTGTGTAAACAGTTTGGGTACTGTGGAAATTTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTACTTTTGTGTAAACAGTTTGGGTACTGTGGAAATTTTTCAC  100

seq1  CTGGTGGGTATGTTCTTTTCAAAAACTCCGATCATTTTTTACATCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGTATGTTCTTTTCAAAAACTCCGATCATTTTTTACATCACTTT  150

seq1  ATAAATCCTGATGTCTCCCAATAATACTTAAATTGGCTGACTTTTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTGATGTCTCCCAATAATACTTAAATTGGCTGACTTTTGTGAA  200

seq1  AGGTTCTAGCCCCTTTAGCCTTCACTAAGATCATATTGTGAAATTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAGCCCCTTTAGCCTTCACTAAGATCATATTGTGAAATTTCAAT  250

seq1  TGTGATGTGCTGGGGAGATGTTTAAACTTAAGAATGTTTCTAGAATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTGCTGGGGAGATGTTTAAACTTAAGAATGTTTCTAGAATGTTC  300

seq1  AGTACCATATGATTCAATTTTCAGGGCCCATGGAGCACAGTAAAGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATATGATTCAATTTTCAGGGCCCATGGAGCACAGTAAAGAGTTG  350

seq1  ATGCGATCCTCTTCAAGTGGAAACAATAAAGTGGAAATAAGAGCAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGATCCTCTTCAAGTGGAAACAATAAAGTGGAAATAAGAGCAGTACC  400

seq1  CAAGACCTTCTACACTCGTGGCAATAGAAATGCCAGCCTACACGGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTTCTACACTCGTGGCAATAGAAATGCCAGCCTACACGGCTTTG  450

seq1  CTTTTTTATGTTTGTTTTTAAAAGAGAAGCATTTCAGGCATGGAGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATGTTTGTTTTTAAAAGAGAAGCATTTCAGGCATGGAGAGATG  500

seq1  ATGGCTAGGCTATTAAGAGCCCTGGCTTCTCTGGGTTCCCTTCCCAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGGCTATTAAGAGCCCTGGCTTCTCTGGGTTCCCTTCCCAGCAC  550

seq1  CCATATAGCAGCTCACAACCATCTATAACTCCAGCTCAAGGGCATCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGCAGCTCACAACCATCTATAACTCCAGCTCAAGGGCATCTTGC  600

seq1  TTGTTTCCATGGGCACCAGACACTCGAGTGGTAC-TTAGACAGACATGAA  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTTTCCATGGGCACCAGACACTCGAGTGGTACTTTAGACAGACATGAA  650

seq1  GGCAAAACACTCATTCATACATATAAAGGAAAATAAAATTTAAAACTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACACTCATTCATACATATAAAGGAAAATAAAATTTAAAACTCAA  700

seq1  AGAGAAACATTACAGTTGTTACCAGC-TTCGGGGAGCTTTGATGCTCTGC  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGAAACATTACAGTTGTTACCAGCTTTCGGGGAGCTTTGATGCTCTGC  750

seq1  TTCCCGAGAAGCAGTCTGCGTGAATCTATACTTTCATTTGTACACCTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGAAGCAGTCTGCGTGAATCTATACTTTCATTTGTACACCTTCA  800

seq1  ATTTTTAAAATAAATGTGGGTTTGTGCATGTGTGTGTGCACGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAATAAATGTGGGTTTGTGCATGTGTGTGTGCACGTGTGTGTG  850

seq1  TGTGTGG  855
      |||||||
seq2  TGTGTGG  857