BAC Information

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BAC

Clone NameB6Ng01-176N15
Chromosome13 (Build37)
Map Location 30,040,310 - 30,041,490
singlet/doubletsinglet
Overlap geneE2f3
Upstream geneSox4, LOC100041135, Cdkal1
Downstream geneMboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176N15.bB6Ng01-176N15.g
ACCGA004279GA004280
length1,0941,175
definitionB6Ng01-176N15.b B6Ng01-176N15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgactgagacaccatccttatttgagttgctgtggtcatggcat
gtcttcatagcaatagaacagtgactcagacaccagccttgtttgtttct
ctctctgcactgtgtaaaaatatttaaagagattttttttctctacctag
gctagctcccaaataaatgagacagagactataagacttatttaatcaag
ctttatggcagaataactgggcagtcattgatctattctaatcctgtgag
ataatctggctacctcccagccaaaatccccaagatacttgcattttaat
aatgatctgactctctcagctccagatgtttttccatggtttctcctctc
gacctttctcatggtgagccctctcttcttctctctactcctctcctggc
tgggatgggaagtccagccctattctcttttctgccaagccactggctga
tcagcttttattgacaagtcagagaataaatggggaacaatatttacata
aacttgaaacaagagatacatagaataatcattacaatgccatgtccaga
ttgccacatgatatgggagcagagaaatccgcatttgaataatacaagga
taatttgtatacagtgcataaaaacattgtgcctacaccagtgcctagga
catagtaggctctcaaaagataaacattgtaaaagtaaattaataattcc
tatgactggaaggtatattagttgggttctcagaaaggaactgatggttt
gaatatttatataataaaaggggatttattagagtggtggcttatagact
gtggtccgacttgtccaacaatatctgtctctcaaaggaaagaccaagga
tctcataattgttccatacatgaggttggatgtctcagttggtctttgtc
tatgttggagctcccaatgaacgaggttctaataccagccaaaaaatgcc
tcatcagcagggtatatgaccgaccttgtcactgaaagtcaggacaatca
ggcaacaaagccaaagctcccttgtcctgcccttaaatggtgggctgcag
cacacggaaagcctcagattaagggtgaatctcttccataactc
gaattcaaatggacgaatgagaaagaacgcatgtctcaggaacggagaag
atggggccagagagctggctcagtggatgagaatgcttggtgctgagaac
ccacatcagacagctaacacccacctgaaactccagccccaagagacaca
aggtctccccccacaaaattactaaaaataatttttttggttttcaaaaa
ggacaaaagtaggcatttgtacagttaaccaaccaagggctgaggctacc
cagggggagtcgagctgtctgggcagcacatgtgcttgtttaattattcc
cacaaacaacctagtattaattgtagtacagcactacactgctattagaa
atgaccctgagtggacaaaggtaggagagggtagggtgtactacttacta
ccttttatggaagacccgtgcttttagtatccagggggttcctagttaac
aatcgatgggtagtgttcccaaagccttgtcaacatgagaaggaagacaa
ggcaaacactgttcttttcaaagatgacacctgagtcaccaagaagtctt
atctgaaaggagcaagtagctgtgctctgacccccaactctccatcctaa
tgaagatgagacccagaggactcagacttgccaagggccctaaggccatc
aaggtcagtgcaggtcagttctaaacctcctgtgttgagagctgtgccgg
gcctggggacaaacagaccaaagagttggatctgggtggctctagaggcc
caacatctcaatgctaccacacccacccatgactcagggggacttcccaa
ggccctcggattgacttgtaattttccctaagacttaatttctagggacc
cccgctttgcttgccagtgagcatccaaacaggctgtaaaacactgcaaa
gctggggctggcttcctgcactgtcttctggcacaccagcaaaacacacc
cagcccggcttgcggaagagtgacggcaatgcctgacgctcactggggat
cagtgggtactagctattcttttcagagaaatgagctaggaccaaacaca
tcattcatcagtcctcaaggcgtcaactacgtagcctaaccaagaatgct
attctgaagccttgatcagccttaccttatggaaaaacatgtatccagac
ccgtgcccacacaccgttagtccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_30040310_30041490
seq2: B6Ng01-176N15.g_64_1238

seq1  GAATTCAAATGGACGAATGAGAAAGAACGCATGTCTCAGGAACGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGACGAATGAGAAAGAACGCATGTCTCAGGAACGGAGAAG  50

seq1  ATGGGGCCAGAGAGCTGGCTCAGTGGATGAGAATGCTTGGTGCTGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCAGAGAGCTGGCTCAGTGGATGAGAATGCTTGGTGCTGAGAAC  100

seq1  CCACATCAGACAGCTAACACCCACCTGAAACTCCAGCCCCAAGAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAGACAGCTAACACCCACCTGAAACTCCAGCCCCAAGAGACACA  150

seq1  AGGTCTCCCCCCACAAAATTACTAAAAATAATTTTTTTGGTTTTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCCCCCACAAAATTACTAAAAATAATTTTTTTGGTTTTCAAAAA  200

seq1  GGACAAAAGTAGGCATTTGTACAGTTAACCAACCAAGGGCTGAGGCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAGTAGGCATTTGTACAGTTAACCAACCAAGGGCTGAGGCTACC  250

seq1  CAGGGGGAGTCGAGCTGTCTGGGCAGCACATGTGCTTGTTTAATTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAGTCGAGCTGTCTGGGCAGCACATGTGCTTGTTTAATTATTCC  300

seq1  CACAAACAACCTAGTATTAATTGTAGTACAGCACTACACTGCTATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAACCTAGTATTAATTGTAGTACAGCACTACACTGCTATTAGAA  350

seq1  ATGACCCTGAGTGGACAAAGGTAGGAGAGGGTAGGGTGTACTACTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGAGTGGACAAAGGTAGGAGAGGGTAGGGTGTACTACTTACTA  400

seq1  CCTTTTATGGAAGACCCGTGCTTTTAGTATCCAGGGGGTTCCTAGTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATGGAAGACCCGTGCTTTTAGTATCCAGGGGGTTCCTAGTTAAC  450

seq1  AATCGATGGGTAGTGTTCCCAAAGCCTTGTCAACATGAGAAGGAAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGATGGGTAGTGTTCCCAAAGCCTTGTCAACATGAGAAGGAAGACAA  500

seq1  GGCAAACACTGTTCTTTTCAAAGATGACACCTGAGTCACCAAGAAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACACTGTTCTTTTCAAAGATGACACCTGAGTCACCAAGAAGTCTT  550

seq1  ATCTGAAAGGAGCAAGTAGCTGTGCTCTGACCCCCAACTCTCCATCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGGAGCAAGTAGCTGTGCTCTGACCCCCAACTCTCCATCCTAA  600

seq1  TGAAGATGAGACCCAGAGGACTCAGACTTGCCAAGGGCCCTAAGGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAGACCCAGAGGACTCAGACTTGCCAAGGGCCCTAAGGCCATC  650

seq1  AAGGTCAGTGCAGGTCAGTTCTAAACCTCCTGTGTTGAGAGCTGTGCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTGCAGGTCAGTTCTAAACCTCCTGTGTTGAGAGCTGTGCCGG  700

seq1  GCCTGGGGACAAACAGACCAAAGAGTTGGATCTGGGTGGCTCTAGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGACAAACAGACCAAAGAGTTGGATCTGGGTGGCTCTAGAGGCC  750

seq1  CAACATCTCAATGCTACCACACCCACCCATGACTCAGGGGGACTTCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTCAATGCTACCACACCCACCCATGACTCAGGGGGACTTCCCAA  800

seq1  GGCCCTCGGATTGACTTGTAATTTTCCCTAAGACTTAATTTCTAGGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCGGATTGACTTGTAATTTTCCCTAAGACTTAATTTCTAGGGACC  850

seq1  CCCGC-TTGCTTGCCAGTGAGCATCCAAACAGGCTGTAAAACACTGCAAA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTTGCTTGCCAGTGAGCATCCAAACAGGCTGTAAAACACTGCAAA  900

seq1  GCTGGGGCTGGCTTCCTGCACTGTCTTCTGGGCACACCAGCAAAACACAC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GCTGGGGCTGGCTTCCTGCACTGTCTTCT-GGCACACCAGCAAAACACA-  948

seq1  CCCAGCCCGGCTTGCGGAAGAGGTGACGGCCAATGCCTGACGGCTCACTG  999
      ||||||||||||||||||||| ||||||| ||||||||||| ||||||||
seq2  CCCAGCCCGGCTTGCGGAAGA-GTGACGG-CAATGCCTGAC-GCTCACTG  995

seq1  GGGATCAGTGGGTACTTAGCTATTCTTTTCAGGAGGAATGAGCTAAGAAC  1049
      ||||||||||||||| ||||||||||||||| ||| |||||||| || ||
seq2  GGGATCAGTGGGTAC-TAGCTATTCTTTTCA-GAGAAATGAGCT-AGGAC  1042

seq1  CAAACACATCATTCATCAGT-CTCAA-GCGTCAACTACGTAG-CTACACA  1096
      |||||||||||||||||||| ||||| ||||||||||||||| |||  ||
seq2  CAAACACATCATTCATCAGTCCTCAAGGCGTCAACTACGTAGCCTAACCA  1092

seq1  GAAATGCTATTCTGAGGGCCTGAATCAAGCTTACTTTAT-GATAAACATG  1145
        |||||||||||||  ||||  ||||  ||||| |||| || |||||||
seq2  AGAATGCTATTCTGA-AGCCTTGATCAGCCTTACCTTATGGAAAAACATG  1141

seq1  TTAATCAAGCACGGTGGCCCACACA-CGTTAGCCCAG  1181
      |  ||| ||  | || ||||||||| |||||| ||||
seq2  T--ATCCAGACCCGT-GCCCACACACCGTTAGTCCAG  1175