MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-178G19
Chromosome	13 (Build37)
Map Location	97,774,640 - 97,775,793
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662
Downstream gene	1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sv2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75209 MGI:1922459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 9 Proteins

name	LOC667582 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667582
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins pseudo : _no_value

name	1200014M14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67463 MGI:1914713
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9330128J19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271144 MGI:2444730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Polk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27015 MGI:1349767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col4a3bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68018 MGI:1915268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hmgcr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15357 MGI:96159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039456 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039456
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC625662 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	1700029F12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66479 MGI:1913729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG620648 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620648 MGI:3646298
definition	note : predicted gene, EG620648 pseudo : _no_value

name	5730427N09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59050 MGI:1913883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039663 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039663
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs

name	Gfm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320806 MGI:2444783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hexb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15212 MGI:96074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Enc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13803 MGI:109610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667676 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 203 ESTs, 23 Proteins pseudo : _no_value

name	LOC100039691 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039691
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039704 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG328314 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328314 MGI:3644417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100039526 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039526
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100039740 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2409 ESTs, 5 Proteins

name	Rgnef (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sv2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395625 GeneID:75209 MGI:1922459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 9 Proteins product : synaptic vesicle glycoprotein 2c transcript_id : XM_991257.1

name	1200014M14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27229042 GeneID:67463 MGI:1914713
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200014M14 gene transcript_id : NM_026173.2

name	9330128J19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111607474 GeneID:271144 MGI:2444730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9330128J19 gene transcript_id : NM_001042714.1

name	Polk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129937 GeneID:27015 MGI:1349767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), kappa transcript_id : NM_012048.2

name	Col4a3bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963670 GeneID:68018 MGI:1915268
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein transcript_id : NM_023420.1

name	Hmgcr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56119095 GeneID:15357 MGI:96159
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-hydroxy-3-methylglutaryl-Coenzyme A reductase transcript_id : NM_008255.1

name	LOC625662 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264621 GeneID:625662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : similar to ankyrin repeat domain 11 transcript_id : XM_127483.7

name	1700029F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107619 GeneID:66479 MGI:1913729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029F12 gene transcript_id : NM_025585.2

name	1700029F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107620 GeneID:66479 MGI:1913729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029F12 gene transcript_id : NM_001080777.1

name	5730427N09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801962 GeneID:59050 MGI:1913883
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730427N09 gene transcript_id : NM_021552.3

name	LOC100039663 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264626 GeneID:100039663
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs product : hypothetical protein LOC100039663 transcript_id : XM_001473707.1

name	Gfm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328424 GeneID:320806 MGI:2444783
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G elongation factor, mitochondrial 2 transcript_id : NM_177266.3

name	Hexb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754185 GeneID:15212 MGI:96074
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hexosaminidase B transcript_id : NM_010422.1

name	Enc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254358 GeneID:13803 MGI:109610
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodermal-neural cortex 1 transcript_id : NM_007930.3

name	LOC100039691 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264630 GeneID:100039691
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039691 transcript_id : XM_001473741.1

name	LOC100039704 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264632 GeneID:100039704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : similar to F36H12.3 transcript_id : XM_001473765.1

name	EG328314 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395639 GeneID:328314 MGI:3644417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG328314 transcript_id : XM_488691.3

name	LOC100039526 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264624 GeneID:100039526
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001473057.1

name	LOC100039740 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264634 GeneID:100039740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2409 ESTs, 5 Proteins product : similar to ribosomal protein transcript_id : XM_001473806.1

name	Rgnef (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123702009 GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho-guanine nucleotide exchange factor transcript_id : NM_012026.2

name	Sv2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395626 GeneID:75209 MGI:1922459
definition	codon_start : 1 product : synaptic vesicle protein 2C protein_id : XP_996351.1

name	1200014M14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385682 CCDS:CCDS26703.1 GeneID:67463 MGI:1914713
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0042802 - identical protein binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC67463 protein_id : NP_080449.1

name	9330128J19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607475 GeneID:271144 MGI:2444730
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC271144 protein_id : NP_001036179.1

name	Polk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753636 CCDS:CCDS26704.1 GeneID:27015 MGI:1349767
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0016450 - kappa DNA polymerase activity [Evidence TAS]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IMP]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : DNA damage-inducible protein b; DinB homolog 1 product : polymerase (DNA directed), kappa protein_id : NP_036178.1

name	Col4a3bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963671 CCDS:CCDS26705.1 GeneID:68018 MGI:1915268
definition	GO_function : GO:0016301 - kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 function : phosphorylates the Goodpasture autoantigen note : collagen, type IV, alpha 3 (Goodpasture antigen) binding protein product : procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein_id : NP_075909.1

name	Hmgcr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56119096 CCDS:CCDS26706.1 GeneID:15357 MGI:96159
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IDA] GO_function : GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IDA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA]; GO:0006695 - cholesterol biosynthesis [Evidence IDA]; GO:0009790 - embryonic development [Evidence IMP]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0006694 - steroid biosynthesis [Evidence IEA]; GO:0016126 - sterol biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : 3-hydroxy-3-methylglutaryl-CoA reductase product : 3-hydroxy-3-methylglutaryl-Coenzyme A reductase protein_id : NP_032281.1

name	LOC625662 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264622 GeneID:625662
definition	codon_start : 1 product : hypothetical protein protein_id : XP_127483.7

name	1700029F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385034 GeneID:66479 MGI:1913729
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC66479 isoform 2 protein_id : NP_079861.1

name	1700029F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107621 GeneID:66479 MGI:1913729
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC66479 isoform 1 protein_id : NP_001074246.1

name	5730427N09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66773175 GeneID:59050 MGI:1913883
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : L-name related protein product : TGF beta-inducible nuclear protein 1 protein_id : NP_067527.2

name	LOC100039663 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264627 GeneID:100039663
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473757.1

name	Gfm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328425 CCDS:CCDS26708.1 GeneID:320806 MGI:2444783
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : G elongation factor, mitochondrial 2 protein_id : NP_796240.2

name	Hexb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754186 CCDS:CCDS26709.1 GeneID:15212 MGI:96074
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0004563 - beta-N-acetylhexosaminidase activity [Evidence IGI] [Evidence IDA] [Evidence IMP]; GO:0043169 - cation binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence IDA] [Evidence ISS] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP] [Evidence IGI]; GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0044267 - cellular protein metabolism [Evidence IMP]; GO:0007338 - fertilization (sensu Metazoa) [Evidence IMP]; GO:0006689 - ganglioside catabolism [Evidence IMP]; GO:0030203 - glycosaminoglycan metabolism [Evidence IGI]; GO:0006687 - glycosphingolipid metabolism [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IGI] [Evidence IMP]; GO:0007040 - lysosome organization and biogenesis [Evidence IMP] [Evidence IGI]; GO:0008049 - male courtship behavior [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0042552 - myelination [Evidence IGI]; GO:0050905 - neuromuscular physiological process [Evidence IMP]; GO:0009313 - oligosaccharide catabolism [Evidence IMP]; GO:0048157 - oogenesis (sensu Mammalia) [Evidence IMP]; GO:0007341 - penetration of zona pellucida [Evidence IMP]; GO:0008654 - phospholipid biosynthesis [Evidence IMP]; GO:0050885 - regulation of balance [Evidence IGI] [Evidence IMP]; GO:0031323 - regulation of cellular metabolism [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IGI]; GO:0019915 - sequestering of lipid [Evidence IMP] [Evidence IGI]; GO:0019953 - sexual reproduction [Evidence IMP]; GO:0001501 - skeletal development [Evidence IGI] codon_start : 1 product : hexosaminidase B protein_id : NP_034552.1

name	Enc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254359 CCDS:CCDS26710.1 GeneID:13803 MGI:109610
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 product : ectodermal-neural cortex 1 protein_id : NP_031956.3

name	LOC100039691 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264631 GeneID:100039691
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473791.1

name	LOC100039704 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264633 GeneID:100039704
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473815.1

name	EG328314 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395640 GeneID:328314 MGI:3644417
definition	codon_start : 1 product : hypothetical protein protein_id : XP_488691.2

name	LOC100039526 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264625 GeneID:100039526
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473107.1

name	LOC100039740 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264635 GeneID:100039740
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_001473856.1

name	Rgnef (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123702010 GeneID:110596 MGI:1346016
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : Rho interacting protein 2; Rho specific exchange factor product : Rho-guanine nucleotide exchange factor protein_id : NP_036156.2

name	LOC100039456 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039456
definition	number : 3 pseudo : _no_value

name	LOC100039456 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039456
definition	number : 2 pseudo : _no_value

name	LOC100039456 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039456
definition	number : 1 pseudo : _no_value

name	LOC667582 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264620 GeneID:667582
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins product : similar to EAP30 subunit of ELL complex pseudo : _no_value transcript_id : XR_030871.1

name	LOC667676 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264623 GeneID:667676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 203 ESTs, 23 Proteins product : similar to uracil DNA glycosylase pseudo : _no_value transcript_id : XR_030992.1

clone name	MSMg01-279O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047H11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-178G19.b	B6Ng01-178G19.g
ACC	GA005417	GA005418
length	1,148	147
definition	B6Ng01-178G19.b	B6Ng01-178G19.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctttgctgttcactggagctcttggggaaagtgggttaactttta ttgagtcgtaaagtgtggtttaagtagatgagacacattaaaaatcaagg caggtatagagatatatgtgccctgaggtgacttcttcccttgcctgacc ataaagttccctgtcctatgtcacaattgtattagttttaaaaaaaatat atccttcctgtgtgtctttatataaacacaagagagctgtctctaccctt cacagagctaagtttgacgttgcttagctgttttgttacttatattcggt gcttgcttttgaaatcaaaagtatcaatggatactttttatctttttata actctgagattttacaaggcacaattcaatccgaggtagagatcttattg ataattgcagagacatttgctagttcataattatccaactagattagctc catgcgttttttttagtgggtggtgcagtgaaggccagaagtcaacctct agtattgattctctggcaccgggtaccttaatttcagagacaggatctct cactgggacccggaactttccagcctaggcctgcaaatcagtgaactcta agtacccaattgtttctgtgtccccagcattggggttacaaatgtgaacc accacgcctggcattttcatgtgggtgttggagctgaactcagctcctca gacttgcatggtgagcacttaactgtgctgtctcccctgtcccttgcttt gctatactacagttgttggcttgtctggcttttcattcttgatttttttt taaaccaaagagagaattcattgggggtttagtcatcacctgaagtcaga gggcatcatgggactgaggaggagagcgtcttttccccagagctagcccc cacctaatgtgctctttaatttaatttaatttaatttaacttaatttaat ttttttttagatttatttattgattatatgtaagtacactgtagctgttc ttcagacacttcagaagagggagtcagatctcgttacggatgtgttgagc cacatgtgttgctgggatttgaactctggactttcggagagcagtcagtg cctctttccacctggagcatctcaccaggctttaattaatttaatgaa	caggatggcctggaactctttatgtagtcaacgctaacttgtagtgatcc tcctgcctcagccctccaagttctgggattacatatgtaagccagtcaca ggaccattcacatgtccgttttttgggtgggggttggggtttttttg
quality values	Open. Hide. 58 22 26 26 58 58 58 58 58 58 58 58 49 54 62 31 20 47 62 62 62 47 62 62 62 62 62 62 62 62 62 62 49 49 62 62 54 62 62 62 62 44 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 49 62 62 62 62 62 62 62 54 62 62 54 52 54 62 62 42 45 62 62 62 62 62 62 62 62 62 62 62 62 51 62 62 58 58 58 58 47 47 58 58 54 45 49 58 58 58 58 58 40 58 54 58 58 58 58 52 58 58 58 54 54 54 58 58 58 58 54 58 58 58 54 54 54 54 52 54 58 58 54 58 58 58 58 54 58 54 54 58 54 42 58 47 34 54 52 58 52 52 52 52 45 58 54 58 58 54 47 49 37 50 32 58 48 49 58 53 54 58 50 49 58 50 51 42 31 58 40 54 58 41 51 58 50 40 49 58 58 51 53 42 47 58 58 58 58 58 53 58 52 54 58 50 51 26 54 51 48 58 35 28 54 53 52 39 58 53 50 51 50 50 39 31 51 31 51 58 51 49 36 50 58 58 37 51 53 50 53 37 41 58 50 50 37 50 40 58 42 53 53 50 58 32 53 29 28 58 58 51 40 51 41 41 58 51 54 41 52 50 53 58 50 40 38 39 42 45 38 39 29 34 49 38 37 38 53 53 39 53 53 54 32 54 38 51 29 39 39 54 51 18 52 54 54 44 38 32 49 40 44 27 33 42 46 26 54 54 54 54 54 54 54 37 31 54 38 40 40 32 40 39 21 33 13 31 12 16 20 17 34 32 30 22 54 35 54 54 49 27 13 51 31 32 31 39 43 24 33 37 30 33 34 32 32 31 36 31 30 31 31 10 52 12 47 46 31 25 32 39 22 5 22 32 33 20 17 32 35 42 19 30 42 21 27 31 17 45 33 32 31 28 27 31 46 51 30 30 40 40 30 19 28 45 18 34 33 29 30 41 43 41 43 31 25 22 33 31 42 32 14 32 22 31 32 28 31 19 30 24 32 35 28 46 29 29 22 6 46 19 31 27 25 46 31 25 33 22 46 21 21 31 31 28 34 25 33 30 46 11 18 35 31 48 46 46 46 44 48 46 25 32 5 38 13 46 27 24 27 39 34 29 31 19 28 28 31 11 21 9 13 23 38 16 29 27 13 31 8 7 9 22 23 30 7 18 21 28 28 13 8 9 10 23 36 11 8 9 31 15 6 17 18 9 35 21 12 32 34 6 16 7 48 29 10 7 22 10 5 8 24 11 28 31 31 15 33 9 7 30 21 12 32 17 4 4 4 6 6 7 18 8 30 6 7 34 7 10 16 6 29 11 9 15 26 10 18 27 9 11 6 28 11 6 11 24 13 7 6 6 9 11 27 29 6 28 19 12 6 7 38 5 18 9 27 24 12 20 13 6 25 8 9 6 10 15 14 24 10 3 5 4 4 8 8 15 10 13 11 10 30 8 25 15 9 14 5 5 16 6 5 5 11 3 7 7 4 14 14 11 13 5 23 28 24 7 11 5 11 13 16	Open. Hide. 59 36 62 62 59 59 62 59 62 62 62 54 32 54 59 59 62 62 62 62 59 62 59 62 62 59 62 62 59 51 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 49 49 54 54 54 49 43 49 62 62 54 49 49 49 54 62 62 54 54 54 54 49 54 62 46 12

Alignment Information

BAC End 1

BAC End 2

seq1: chr13_97774640_97775793
seq2: B6Ng01-178G19.b_41_1188 (reverse)

seq1  TTCATTAAAATTAAATTAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGC  50
      |||||||||  | |||||| | |||||||||||   |||  || ||||| 
seq2  TTCATTAAA--TTAATTAAAGCCTGGTGAGATGCTCCAGGTGGAAAGAGG  48

seq1  ACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATG  100
        |||||||||| |||||| ||||||||||||||||||||||| ||||| 
seq2  CACTGACTGCTC-TCCGAAAGTCCAGAGTTCAAATCCCAGCAA-CACAT-  95

seq1  GTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTGGAGTGTC  150
      |||||||| |  ||||||||||||||||||||||||||||||| ||||||
seq2  GTGGCTCA-ACACATCCGTAACGAGATCTGACTCCCTCTTCTGAAGTGTC  144

seq1  TGAAG-ACAGCTACAGTGTACTTACATATAATCAATAAATAAATCTTAAA  199
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAAGAACAGCTACAGTGTACTTACATATAATCAATAAATAAATC-TAAA  193

seq1  AAAAAATTAAATTAAGTTAAATTAAATTAAATTAAATTAAAGAGCACATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAATTAAGTTAAATTAAATTAAATTAAATTAAAGAGCACATT  243

seq1  AGGTGGGGGCTAGCTCTGGGGAAAAGACGCTCTCCTCCTCAGTCCCCTGA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGTGGGGGCTAGCTCTGGGGAAAAGACGCTCTCCTCCTCAGTCCCATGA  293

seq1  TGCCCTCTGACTTCAGGTGATGACTAAACCCCCAATGAATTCTCTCTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTGACTTCAGGTGATGACTAAACCCCCAATGAATTCTCTCTTTG  343

seq1  GTTTAAAAAAAAATCAAGAATGAAAAGCCAGACAAGCCAACAACTGTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAAAAATCAAGAATGAAAAGCCAGACAAGCCAACAACTGTAGT  393

seq1  ATAGCAAAGCAAGGGACAGGGGAGACAGCACAGTTAAGTGCTCACCATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGCAAGGGACAGGGGAGACAGCACAGTTAAGTGCTCACCATGC  443

seq1  AAGTCTGAGGAGCTGAGTTCAGCTCCAACACCCACATGAAAATGCCAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGGAGCTGAGTTCAGCTCCAACACCCACATGAAAATGCCAGGC  493

seq1  GTGGTGGTTCACATTTGTAACCCCAATGCTGGGGACACAGAAACAATTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTTCACATTTGTAACCCCAATGCTGGGGACACAGAAACAATTGG  543

seq1  GTACTTAGAGTTCACTGATTTGCAGGCCTAGGCTGGAAAGTTCCGGGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAGAGTTCACTGATTTGCAGGCCTAGGCTGGAAAGTTCCGGGTCC  593

seq1  CAGTGAGAGATCCTGTCTCTGAAATTAAGGTACCCGGTGCCAGAGAATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGATCCTGTCTCTGAAATTAAGGTACCCGGTGCCAGAGAATCA  643

seq1  ATACTAGAGGTTGACTTCTGGCCTTCACTGCACCACCCACTAAAAAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGAGGTTGACTTCTGGCCTTCACTGCACCACCCACTAAAAAAAAC  693

seq1  GCATGGAGCTAATCTAGTTGGATAATTATGAACTAGCAAATGTCTCTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGCTAATCTAGTTGGATAATTATGAACTAGCAAATGTCTCTGCA  743

seq1  ATTATCAATAAGATCTCTACCTCGGATTGAATTGTGCCTTGTAAAATCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATAAGATCTCTACCTCGGATTGAATTGTGCCTTGTAAAATCTC  793

seq1  AGAGTTATAAAAAGATAAAAAGTATCCATTGATACTTTTGATTTCAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATAAAAAGATAAAAAGTATCCATTGATACTTTTGATTTCAAAAG  843

seq1  CAAGCACCGAATATAAGTAACAAAACAGCTAAGCAACGTCAAACTTAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCGAATATAAGTAACAAAACAGCTAAGCAACGTCAAACTTAGCT  893

seq1  CTGTGAAGGGTAGAGACAGCTCTCTTGTGTTTATATAAAGACACACAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGGTAGAGACAGCTCTCTTGTGTTTATATAAAGACACACAGGA  943

seq1  AGGATATATTTTTTTTAAAACTAATACAATTGTGACATAGGACAGGGAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATATTTTTTTTAAAACTAATACAATTGTGACATAGGACAGGGAAC  993

seq1  TTTATGGTCAGGCAAGGGAAGAAGTCACCTCAGGGCACATATATCTCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCAGGCAAGGGAAGAAGTCACCTCAGGGCACATATATCTCTAT  1043

seq1  ACCTGCCTTGATTTTTAATGTGTCTCATCTACTTAAACCACACTTTACGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTTGATTTTTAATGTGTCTCATCTACTTAAACCACACTTTACGA  1093

seq1  CTCAATAAAAGTTAACCCACTTTCCCCAAGAGCTCCAGTGAACAGCAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAAAAGTTAACCCACTTTCCCCAAGAGCTCCAGTGAACAGCAAAG  1143

seq1  AATTC  1154
      |||||
seq2  AATTC  1148

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information