BAC Information

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BAC

Clone NameB6Ng01-178G23
Chromosome13 (Build37)
Map Location 25,967,755 - 26,100,184
singlet/doubletdoublet
Overlap genenone
Upstream geneD130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178G23.bB6Ng01-178G23.g
ACCGA005425GA005426
length2011,047
definitionB6Ng01-178G23.b B6Ng01-178G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,099,984 - 26,100,184)(25,967,755 - 25,968,810)
sequence
acatgtgaatagaagccatgacacagttctctagcttgtgtctactgtaa
gtagtttctaggccatttaggagagtgagtcaatattaatttccatttaa
aagtactaaccctcatctcatatctctctctctctctctctctctctctc
tctttctgtgtctgtgtgggtggtgtgggtgggtgtgtgtgtgtgtgtgt
g

gaattcacatagaaaggaggagccaaagtctcttatccatctggctgagg
tgacctcaccatataaaggcaagaatcctccttgagttttgctcatcctc
ctactgtcaggggaggactctaattgacagggcatctttcagaataggtg
cccttttgccattccataaacatttcattctctagagagacggtcagaaa
tactctcccttgtgctagtaggtgtgagctgacagctcctgatgccagtg
gagacctcttaaattagtttccgccaagctctgcatatctcaaaacagca
caaggtagaggctgtagaggcatgctctgagcaaacgaccgcagccactg
ccagacaccatcctgggtcctccctcactgcagggtcagcctttccaaat
ggtttgcttttattcaagctccgttgttcttcccttatcatgttagtaag
gtcactgtgccaaataatgggtgcatgagagtttactgctcattttaaat
tctaacagcttgttttctaccccacattctgcagactttaaaaatagagt
ttaaatgccatgatttttatttatttatttatttatttatttatatatat
atttttttgtgcatgtgtgtgacaatgattcatgatccctgttttgagta
gcatataaaaagtacagttagggaagctataaattgccaccaattttctg
aaagtagtcacaattaacaatgatttgggagagggagagtgcttagctac
ctgagtagatggacacatgaatataagaataacattaaatgaagaaatga
cactacatgtgttaaaaattgtatatttatatttttctctttcttttggt
ataatattagggaattaagtccagaacgtatacaatatttgctgcaaaaa
aatgatgacccattttttaaaaacagttatattttatatctttaattgtg
tgtatatatgtgcatatatgcatatgagtagaggtatccatgagcagaat
tcatctggacctcgagttcttggtgtgtgactctctaatatagtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26099984_26100184
seq2: B6Ng01-178G23.b_52_252 (reverse)

seq1  CACACACACACACACACACCCACCCACACCACCCACACAGACACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCCACCCACACCACCCACACAGACACAGAAAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGAGATGAGGGTTAGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGAGATGAGGGTTAGTACT  100

seq1  TTTAAATGGAAATTAATATTGACTCACTCTCCTAAATGGCCTAGAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGAAATTAATATTGACTCACTCTCCTAAATGGCCTAGAAACTA  150

seq1  CTTACAGTAGACACAAGCTAGAGAACTGTGTCATGGCTTCTATTCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTAGACACAAGCTAGAGAACTGTGTCATGGCTTCTATTCACATG  200

seq1  T  201
      |
seq2  T  201


seq1: chr13_25967755_25968810
seq2: B6Ng01-178G23.g_63_1109

seq1  GAATTCACATAGAAAGGAGGAGCCAAAGTCTCTTATCCATCTGGCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAGAAAGGAGGAGCCAAAGTCTCTTATCCATCTGGCTGAGG  50

seq1  TGACCTCACCATATAAAGGCAAGAATCCTCCTTGAGTTTTGCTCATCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCACCATATAAAGGCAAGAATCCTCCTTGAGTTTTGCTCATCCTC  100

seq1  CTACTGTCAGGGGAGGACTCTAATTGACAGGGCATCTTTCAGAATAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCAGGGGAGGACTCTAATTGACAGGGCATCTTTCAGAATAGGTG  150

seq1  CCCTTTTGCCATTCCATAAACATTTCATTCTCTAGAGAGACGGTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGCCATTCCATAAACATTTCATTCTCTAGAGAGACGGTCAGAAA  200

seq1  TACTCTCCCTTGTGCTAGTAGGTGTGAGCTGACAGCTCCTGATGCCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCCTTGTGCTAGTAGGTGTGAGCTGACAGCTCCTGATGCCAGTG  250

seq1  GAGACCTCTTAAATTAGTTTCCGCCAAGCTCTGCATATCTCAAAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCTTAAATTAGTTTCCGCCAAGCTCTGCATATCTCAAAACAGCA  300

seq1  CAAGGTAGAGGCTGTAGAGGCATGCTCTGAGCAAACGACCGCAGCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGAGGCTGTAGAGGCATGCTCTGAGCAAACGACCGCAGCCACTG  350

seq1  CCAGACACCATCCTGGGTCCTCCCTCACTGCAGGGTCAGCCTTTCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCATCCTGGGTCCTCCCTCACTGCAGGGTCAGCCTTTCCAAAT  400

seq1  GGTTTGCTTTTATTCAAGCTCCGTTGTTCTTCCCTTATCATGTTAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTTTTATTCAAGCTCCGTTGTTCTTCCCTTATCATGTTAGTAAG  450

seq1  GTCACTGTGCCAAATAATGGGTGCATGAGAGTTTACTGCTCATTTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGCCAAATAATGGGTGCATGAGAGTTTACTGCTCATTTTAAAT  500

seq1  TCTAACAGCTTGTTTTCTACCCCACATTCTGCAGACTTTAAAAATAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAGCTTGTTTTCTACCCCACATTCTGCAGACTTTAAAAATAGAGT  550

seq1  TTAAATGCCATGATTTTTATTTATTTATTTATTTATTTATTTATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCATGATTTTTATTTATTTATTTATTTATTTATTTATATATAT  600

seq1  ATTTTTTTGTGCATGTGTGTGACAATGATTCATGATCCCTGTTTTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTGCATGTGTGTGACAATGATTCATGATCCCTGTTTTGAGTA  650

seq1  GCATATAAAAAGTACAGTTAGGGAAGCTATAAATTGCCACCAATTTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAAAAGTACAGTTAGGGAAGCTATAAATTGCCACCAATTTTCTG  700

seq1  AAAGTAGTCACAATTAACAATGATTTGGGAGAGGGAGAGTGCTTAGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTCACAATTAACAATGATTTGGGAGAGGGAGAGTGCTTAGCTAC  750

seq1  CTGAGTAGATGGACACATGAATATAAGAATAACATTAAATGAAGAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGATGGACACATGAATATAAGAATAACATTAAATGAAGAAATGA  800

seq1  CACTACATGTGTTAAAAATTGTATATTTATATTTTTCTCTTTCTTTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATGTGTTAAAAATTGTATATTTATATTTTTCTCTTTCTTTTGGT  850

seq1  ATAATATTAGGGAATTAAGTCCAGAACGTATACAATATTTGCTGCAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTAGGGAATTAAGTCCAGAACGTATACAATATTTGCTGCAAAAA  900

seq1  AATGATGACCCA-TTTTTAAAAACAGTTATATTTTATATCTTTAATTGTG  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGATGACCCATTTTTTAAAAACAGTTATATTTTATATCTTTAATTGTG  950

seq1  TGTATATATGTGCATTAATATGCATATGAGTAGAGGTATCCAATGAGGCC  999
      |||||||||||||||  |||||||||||||||||||||||| |||||  |
seq2  TGTATATATGTGCAT--ATATGCATATGAGTAGAGGTATCC-ATGAG--C  995

seq1  AGAAATTCATCTGGACCTCGAGTTCTTGGTGGTTGTGAACTCTCTAATAT  1049
      || ||||||||||||||||||||||||||||  |||| ||||||||||||
seq2  AG-AATTCATCTGGACCTCGAGTTCTTGGTG--TGTG-ACTCTCTAATAT  1041

seq1  AGGTGCT  1056
      | |||||
seq2  A-GTGCT  1047


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