BAC Information

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BAC

Clone NameB6Ng01-178H15
Chromosome13 (Build37)
Map Location 20,867,332 - 20,988,335
singlet/doubletdoublet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H15.bB6Ng01-178H15.g
ACCGA005452GA005453
length961549
definitionB6Ng01-178H15.b B6Ng01-178H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,987,782 - 20,988,335)(20,867,332 - 20,867,880)
sequence
gaattcaactatgcgcatccctcaccctatacaaaattcaactcattgtt
gtcttaatgcaacagtggaaagttttaaaccgttagagggaaaagtaggt
aaaactcttcacgatacagactcaggcaagggctttctgaatagagtcta
gttgccggaaaaataagactaatagttgctaaattgttctgcctgaaact
gaaaaggaaatagttgactgagagacagtctgtaagatcttttctagctt
taaatctgatagagaatatgtagaatacagagagccctcaaaaacccagt
caataagaaaacaaactacccagtcaccaaataggctaaaggtatgaact
gagagctaaaaagacaaaaaaaaaaaaaaaaaaaaaaaacaatacaagct
tttaacagtgctcaatatccttaacccctggggaaatgcaaatgaaaact
tcattgatatcctatctcactggtgtcagaatgacagtaattaggaaagc
aaatgaaaaacattggcaaggatcagagggaaaagaatctgtctacactg
ctgtgggaaaccagctagttctgctactgtggagctccatacagagattt
agccgaagaaaatacaaaacagatcttccctgggatccaactatataagt
ctgagtacctggccaaaggactccaagccaaacacatcacagagatgctt
gaacaactattgcagcactattcacaacaggtaagctatagaaacagcct
gtctagccatcagagaattggataaagaaagaaatacataggattttttg
agccataaaagagtaaagttatattatttgcaggaaaatggactcaactg
gagatagcaagtggttcctagattttaaagtagcttcataaatcatgtgt
gatggcatgacagaagttcgacaatggggactatgaaaagtggggagggg
agtaagggaaa
tggttgctatggttttctgcatgagattgagcccatcaatgttctgtcct
ggatggggggagagtatgtgaggcctcacccttagctgagtagctattat
agtcaataaagtatgggagaagatgaatacatttacttcagagatgtagc
cactggcaaatggcccctgatccagtaaataacctcacagccatgtgctt
gctataaattaaactctgtgggttacattttttataagacacagaagaag
gggtatgtgctgaaatgaggcctacagaaagagtaggaaggagaaaagaa
aatggagagggtggtgaatacaatcaaaatataacaactagcaaccatgt
ttatgtaagacctcctttcagggacccccactctagtctcaggagaaaga
gagcacccaaagaaacccaagaatcctccttgctgtaagcacatgaggca
gtttaatgacagagctccgggtcgaaatgtatctcatgcaggagatagtg
gattcgaccccaaggctggaaagctaggggtcttggggggtagggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20987782_20988335
seq2: B6Ng01-178H15.b_450_1004 (reverse)

seq1  TTTCCCTTACTCCCCTCCCCACTTTTCATAGTCCCCATTGTCGAACTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTACTCCCCTCCCCACTTTTCATAGTCCCCATTGTCGAACTTCT  50

seq1  GTCATGCCATCACACATGATTTATGAAGCTAC-TTAAAATCTAGGAACCA  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCATGCCATCACACATGATTTATGAAGCTACTTTAAAATCTAGGAACCA  100

seq1  CTTGCTATCTCCAGTTGAGTCCATTTTCCTGCAAATAATATAACTTTACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATCTCCAGTTGAGTCCATTTTCCTGCAAATAATATAACTTTACT  150

seq1  CTTTTATGGCTCAAAAAATCCTATGTATTTCTTTCTTTATCCAATTCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGGCTCAAAAAATCCTATGTATTTCTTTCTTTATCCAATTCTCT  200

seq1  GATGGCTAGACAGGCTGTTTCTATAGCTTACCTGTTGTGAATAGTGCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTAGACAGGCTGTTTCTATAGCTTACCTGTTGTGAATAGTGCTGC  250

seq1  AATAGTTGTTCAAGCATCTCTGTGATGTGTTTGGCTTGGAGTCCTTTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGTTCAAGCATCTCTGTGATGTGTTTGGCTTGGAGTCCTTTGGC  300

seq1  CAGGTACTCAGACTTATATAGTTGGATCCCAGGGAAGATCTGTTTTGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTCAGACTTATATAGTTGGATCCCAGGGAAGATCTGTTTTGTAT  350

seq1  TTTCTTCGGCTAAATCTCTGTATGGAGCTCCACAGTAGCAGAACTAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCGGCTAAATCTCTGTATGGAGCTCCACAGTAGCAGAACTAGCTG  400

seq1  GTTTCCCACAGCAGTGTAGACAGATTCTTTTCCCTCTGATCCTTGCCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACAGCAGTGTAGACAGATTCTTTTCCCTCTGATCCTTGCCAAT  450

seq1  GTTTTTCATTTGCTTTCCTAATTACTGTCATTCTGACACCAGTGAGATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATTTGCTTTCCTAATTACTGTCATTCTGACACCAGTGAGATAG  500

seq1  GATATCAATGAAGTTTTCATTTGCATTTCCCCAGGGGTTAAGGATATTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAATGAAGTTTTCATTTGCATTTCCCCAGGGGTTAAGGATATTGA  550

seq1  GCACT  554
      |||||
seq2  GCACT  555

seq1: chr13_20867332_20867880
seq2: B6Ng01-178H15.g_72_620

seq1  TGGTTGCTATGGTTTTCTGCATGAGATTGAGCCCATCAATGTTCTGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTATGGTTTTCTGCATGAGATTGAGCCCATCAATGTTCTGTCCT  50

seq1  GGATGGGGGGAGAGTATGTGAGGCCTCACCCTTAGCTGAGTAGCTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGGGAGAGTATGTGAGGCCTCACCCTTAGCTGAGTAGCTATTAT  100

seq1  AGTCAATAAAGTATGGGAGAAGATGAATACATTTACTTCAGAGATGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAAAGTATGGGAGAAGATGAATACATTTACTTCAGAGATGTAGC  150

seq1  CACTGGCAAATGGCCCCTGATCCAGTAAATAACCTCACAGCCATGTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAAATGGCCCCTGATCCAGTAAATAACCTCACAGCCATGTGCTT  200

seq1  GCTATAAATTAAACTCTGTGGGTTACATTTTTTATAAGACACAGAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAATTAAACTCTGTGGGTTACATTTTTTATAAGACACAGAAGAAG  250

seq1  GGGTATGTGCTGAAATGAGGCCTACAGAAAGAGTAGGAAGGAGAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTGCTGAAATGAGGCCTACAGAAAGAGTAGGAAGGAGAAAAGAA  300

seq1  AATGGAGAGGGTGGTGAATACAATCAAAATATAACAACTAGCAACCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGGGTGGTGAATACAATCAAAATATAACAACTAGCAACCATGT  350

seq1  TTATGTAAGACCTCCTTTCAGGGACCCCCACTCTAGTCTCAGGAGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAGACCTCCTTTCAGGGACCCCCACTCTAGTCTCAGGAGAAAGA  400

seq1  GAGCACCCAAAGAAACCCAAGAATCCTCCTTGCTGTAAGCACATGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCAAAGAAACCCAAGAATCCTCCTTGCTGTAAGCACATGAGGCA  450

seq1  GTTTAATGACAGAGCTCCGGGTCGAAATGTATCTCATGCAGGAGATAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGACAGAGCTCCGGGTCGAAATGTATCTCATGCAGGAGATAGTG  500

seq1  GATTCGACCCCAAGGCTGGAAAGCTAGGGGTCTTGGGGGGTAGGGGGCT  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGACCCCAAGGCTGGAAAGCTAGGGGTCTTGGGGGGTAGGGGGCT  549