BAC Information

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BAC

Clone NameB6Ng01-178I11
Chromosome13 (Build37)
Map Location 19,414,798 - 19,415,634
singlet/doubletsinglet
Overlap geneTcrg
Upstream genePou6f2, Vps41, Amph, LOC624044, Tcrg-V4, LOC624071
Downstream geneTcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I11.bB6Ng01-178I11.g
ACCGA005491GA005492
length1,2331,157
definitionB6Ng01-178I11.b B6Ng01-178I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatatcactttttgcagatgatatgatagtatatataagtga
acctaaaaattccacgacagaacacctaaacttgaaaaacaacgtcggtg
aaatagctgaatataaaattaaccaaacatatcaatggcctttctcttca
caaagaacaaacaggctgagaaggaaattagagaaccatcgcccttctca
atagtcacaaataatataacatactttggcgtgattctaactaaggaagt
ggaagatctgtatgataacaacttcaagtctctgaagaaagaaattaaag
aagatttcagaagatggaaagatcatccattatcatggattggcagtatc
aacattgtaaaaatgaccatcttgccaaaagaaatctacagattcaataa
actctccattaaaattccaactcaattcttcaatgaattagaaagggcaa
tctgcaaatacattgggaataaacaaaacctaggatagcaaaaaatcttc
tcatggataaaagaacctcttgtgcaatcaccatgcctgacccaaagctt
tactacagagcaattgtgataaaaaactgcatggtactgatatagtgaca
gagaagtagaccaatggaatagaattgaagacccagaaatgaacccacac
acctattgtcaattgatcatctacaagggagctaaaaccatccagtgtaa
aaaagactgcattttcaacaaatagtgctgggacaattggtggttatcat
gtagaagaatgtgaatcaatccattcctatctccttgtactaaggtcaaa
tgtaagtggatcaaggagctccacataaaatcagagacactgaaacttgt
agaggagaaagtgcggaaaagcctcaaagatatgggaacagggaaaaatt
cctgaatagaagaaaaatggcttgtattgtaagatttagaattgacaaat
gggacctcataaagctgcaaatcttttgtaaggcaaagacaccttcaata
gacaaaaggtcaccaaagatgtgaaaggatctttcactgtctaaatcaga
tagggcactatatcaaattataaataagactcagaggtggattcagaaat
caaataaaacgggctcagagctaagaaagaatttctcacctgagaattcg
aattgcttagagagaccttgacatgttacatcttaatcgcagttaagtta
aatcaaacaaccctggagattccatgctacaga
gaattcagatggacatcggaacatcagaaagcctttgaaaatattaagga
ggccctgctgactgtgccagccttggcattgccagatctaaccaaaccct
gcatcctctatgttgatgagagggtgtgggggccagaggagttcttactc
aggctctagggccctggaagaggctggtagcatattcatctaagaagctg
gacccagtggccaggagatggcccacatgtttaaaggctgttcctgcagt
agcactactcattaaagatgctgacaaattaactctgggacagcaaataa
ctgtggaagtccctcactctcttgaaagcactatttgtcagcccccagac
ctatggatggcaaatgcttggatgattcactaccagagtctgctgctgac
tgaacgggtcatgtttgctccacctgctattctcaatcctgccacctttc
tgcctgaaacggacaactcctcacccggtcactgctgtgcaaacatcctt
gcagaggaaattgggattcaaagtgatctacgtgaccagccatgaccagg
tgttccaaactggtatacagacagaagcagtttcctagtggaaggtaaga
ggatggcaggggctgcagtggtagatggtaagcgagatgtgcgggctggc
agcctgaaggaaggtaagtcagctcaaaaagctgaattaattgccctgac
tcaggccctttagattgctcaagggcagtccatcaatatttacacggata
gcaggtatgtttttgctacagcccatgtccacgttgccatgtataggcac
agagggttgctgatgtcagcaggcaaggacataaaaaataaagaggagat
tctgagcctccttgaggctattcatctgcctgccaaagtggccattatac
attttcctggacatcaaaaaggacacatgctgtgacaaggggtaaaagca
ttgctgatgttaaagctaaacaggctgcacttgtcccttagaatactgcc
cttcagaactcaatactgcccttcagactcacagatggaactctcaggcc
tagatctgcccttcagactcaatactgccttcagactcacagaatggact
cctccagaagtgttctgcagacccaaaaacgaagatttggcaaatataca
tctgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19414798_19415634
seq2: B6Ng01-178I11.g_584_1222

seq1  CAAAGTGATCTACGTGACCAGCTGTGGCCAGGTGTTCCAAACTGGTACAC  50
      ||||||||||||||||||||||  || |||||||||||||||||||| ||
seq2  CAAAGTGATCTACGTGACCAGCCATGACCAGGTGTTCCAAACTGGTATAC  50

seq1  AGATGGAAGCAGTTTCCTAGTAGAAGGTAAGAGGATGGCAGGGGCGGTGG  100
      |||  |||||||||||||||| ||||||||||||||||||||||| |  |
seq2  AGACAGAAGCAGTTTCCTAGTGGAAGGTAAGAGGATGGCAGGGGCTGCAG  100

seq1  TGGTAAATGGTAAGCGACTCGTGTGGGCTGGCAGCCTGCCAGAAGGTACG  150
      ||||| |||||||||||   ||| ||||||||||||||   ||||||| |
seq2  TGGTAGATGGTAAGCGAGATGTGCGGGCTGGCAGCCTGAAGGAAGGTAAG  150

seq1  TCAGCTCAAAAAGCTGAATTAATTGCCCTGATCCAGGCCCTTCAGATGGC  200
      |||||||||||||||||||||||||||||||  ||||||||| |||| ||
seq2  TCAGCTCAAAAAGCTGAATTAATTGCCCTGACTCAGGCCCTTTAGATTGC  200

seq1  TGAGGGGCAGTCCATCAACATTTACACCGATAGCAGGTATGCTTTTGCTA  250
      | | |||||||||||||| |||||||| ||||||||||||| ||||||||
seq2  TCAAGGGCAGTCCATCAATATTTACACGGATAGCAGGTATGTTTTTGCTA  250

seq1  CAGCCCACATCCACGGTGCCATCTATAGACAAAGAGGCTTGCTGACGTCA  300
      |||||||  |||||| |||||| ||||| || ||||| ||||||| ||||
seq2  CAGCCCATGTCCACGTTGCCATGTATAGGCACAGAGGGTTGCTGATGTCA  300

seq1  GCAGGCAAGGACATAAAAAAATAAAGAGGAGATTCTGAGCCTCCTTGAGG  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAGGACAT-AAAAAATAAAGAGGAGATTCTGAGCCTCCTTGAGG  349

seq1  CTATTTATCTGCCTGCCAAAGTGGCCATTATACATTGTCCTGGACATCAA  400
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  CTATTCATCTGCCTGCCAAAGTGGCCATTATACATTTTCCTGGACATCAA  399

seq1  AAAGGACACGATGCTGTGACAAGGGGGAATAACATGCCTGATGCT-AAGC  449
      ||||||||| |||||||||||||||| || | |||  |||||| | ||||
seq2  AAAGGACAC-ATGCTGTGACAAGGGGTAAAAGCATTGCTGATGTTAAAGC  448

seq1  TAAACAGGCTGCACTCGGCCCTAATATACTGCCCTTCAGGACTCAATACT  499
      ||||||||||||||| | |||| |                          
seq2  TAAACAGGCTGCACTTGTCCCTTA--------------------------  472

seq1  GCCCTTCAGGACTCAGTACTGCCCTTCAGGACTCAATACTGCCCTTCAGG  549
                    | ||||||||||||| |||||||||||||||||| |
seq2  -------------GAATACTGCCCTTCAGAACTCAATACTGCCCTTCA-G  508

seq1  ACTCAATACTGCCCTTCAGACTTAATACTGCCCTTCAGAACTCAATACTG  599
      |||||           ||||        ||       ||||||       
seq2  ACTCA-----------CAGA--------TG-------GAACTC-------  525

seq1  CCCTTCAGGTCTCAATACTGCCCTTCAGGACTCAATACTGCCCTTCAGAC  649
                              ||||| ||  || |||||||||||||
seq2  ------------------------TCAGGCCTAGAT-CTGCCCTTCAGAC  550

seq1  TCAATACTGCCCTTCAGAACTCAATACTGCCCTTCAGAACTCAATACTGC  699
      |||||||||                     ||||||| |||||       
seq2  TCAATACTG---------------------CCTTCAG-ACTCA-------  571

seq1  CCTTCAGAACTCAATACTGCCCTTCAGGACTCAATACTGCCCTTCAGGAC  749
          |||||                                     ||||
seq2  ----CAGAA------------------------------------TGGAC  581

seq1  TCCACAGATAGAACCTCTCCAGAAAGTTGCTCTGCCAGAACCACAAAAAG  799
      ||              ||||||||   || |||| |||| ||| |||| |
seq2  TC--------------CTCCAGAA--GTGTTCTG-CAGACCCA-AAAACG  613

seq1  AAGGGAAAAGATTTATTGAAAATATACATCGGCTGTCC  837
             ||||||  | | ||||||||||   ||||||
seq2  -------AAGATT--TGGCAAATATACAT---CTGTCC  639