BAC Information

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BAC

Clone NameB6Ng01-179B15
Chromosome13 (Build37)19 (Build37)
Map Location 29,329,662 - 29,330,13412,246,309 - 12,247,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179B15.bB6Ng01-179B15.g
ACCGA005915GA005916
length467942
definitionB6Ng01-179B15.b B6Ng01-179B15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,329,662 - 29,330,134)(12,246,309 - 12,247,216)
sequence
tttgttttctccatctatagtaattgaaagtttggcggggtatagtagtc
tgggctggaatttgtgttctcttagtgtctgtataacatctgtccagact
cttctggctttcatagtctctggtgaaaaatctggtgtaattctgatagg
cctgcctttatatgttacttgacattttacccttactgcttttaatattc
tatccttatttagtgcatttgttgttctgaatattatgtgtcaggaggaa
tttctcttctggtctagtctatttggagttctgtaggcttcttgtatgtt
catgggcatctctttctttaggtttgggaagttttcttctataattttgt
tgaagatatttgttggccctttaagttgagaatcttcattctcatctact
ccgattttctgtaggtttggtcttctcattgtgtcctggatttcctggat
gtttttagttaagatct
gaattccaaagacaagaaaactttattttataaactcttagcacgcagta
catatatatatatatatacatatatatatatatatgcatatatatataca
cagatatatatgtatatatacttttaaaagcaaaattttaaaaagatgaa
atgtatatatgttgtaataaactatcattaatgttaagtataaataacat
ggtagttttgactgtatgagtcaaattactaacatttatattaaaatcgt
gtggttatttaatttgttcagcacatattaaatgcatatgtgaagctggg
cattattctgataccaaacaaaccaagttcagcaattagtgactaaaaat
aaggtgaccaagagtatgctgtaaaatcatctttctcatttagaaaccta
aagagacagatttttaaaaatatttttattaggtattttcttcatttaca
ttttcaatgatattccaaaagtcccccataccctccccccactcccctac
ccacccactcccactttttggccctggcattcccctgtactggggcatat
aaagtttgcaagtccaatgggcctctctttccagtgatggcagactaggc
catcttttgataaatatgcagctagagtcaagagctccggggtactggtt
agttcataatgttgtttcacctatagggttgcagatcccgttagctcctt
gggtactttctctagctcctccattggggggcccctgtgatccatccaat
agctgactgtgagcatccacttctgtgtttgctaggccccggcatagtct
cacaagagagagctctatctggggttcttttcagcaaaattgctagtgtg
tgcaatggtgtcagcgtttggaagcttgattatggggatggatccccaga
tatggcagtctctaagaatggtccatccctttcgttcacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29329662_29330134
seq2: B6Ng01-179B15.b_47_519 (reverse)

seq1  AGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCA  50
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTAACTAAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCA  50

seq1  AACCTACGCATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGG  100
      |||||||  | ||| ||||| |||||||||||||||| |||||| |||||
seq2  AACCTACAGAAAATCGGAGTAGATGAGAATGAAGATTCTCAACTTAAAGG  100

seq1  ACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAA  150
       ||| |||| ||||||||||||||||| ||||||||||||||||| ||||
seq2  GCCAACAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAA  150

seq1  AGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGA  200

seq1  CTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAA  250
      || |||||||| |||||||||||| ||||||||||| |||||||||||||
seq2  CTAGACCAGAAGAGAAATTCCTCCTGACACATAATATTCAGAACAACAAA  250

seq1  TGCACTAAATAAAGAGAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG  300
      |||||||||||| || |||||| ||||||||||||||| |||| ||||||
seq2  TGCACTAAATAAGGATAGAATATTAAAAGCAGTAAGGGTAAAATGTCAAG  300

seq1  TAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAG  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAACATATAAAGGCAGGCCTATCAGAATTACACCAGATTTTTCACCAGAG  350

seq1  ACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGA  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTATGAAAGCCAGAAGAGTCTGGACAGATGTTATACAGACACTAAGAGA  400

seq1  ACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCA  450
      |||||||||||||||||| ||||||||||| |||||||| |||||||| |
seq2  ACACAAATTCCAGCCCAGACTACTATACCCCGCCAAACTTTCAATTACTA  450

seq1  TAGATAGAGAAACCAAAGTATTC  473
      ||||| |||||| ||||| ||||
seq2  TAGATGGAGAAAACAAAGAATTC  473

seq1: chr19_12246309_12247216
seq2: B6Ng01-179B15.g_67_980

seq1  GAATTCCAAAGACAAGAAAACTTTATTTTATAAACTCTTAGCACGCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGACAAGAAAACTTTATTTTATAAACTCTTAGCACGCAGTA  50

seq1  CATATATATATATATATACATATATATATATATATGCATATATATATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATATATACATATATATATATATATGCATATATATATACA  100

seq1  CAGATATATATGTATATATACTTTTAAAAGCAAAATTTTAAAAAGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATATGTATATATACTTTTAAAAGCAAAATTTTAAAAAGATGAA  150

seq1  ATGTATATATGTTGTAATAAACTATCATTAATGTTAAGTATAAATAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATGTTGTAATAAACTATCATTAATGTTAAGTATAAATAACAT  200

seq1  GGTAGTTTTGACTGTATGAGTCAAATTACTAACATTTATATTAAAATCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTTGACTGTATGAGTCAAATTACTAACATTTATATTAAAATCGT  250

seq1  GTGGTTATTTAATTTGTTCAGCACATATTAAATGCATATGTGAAGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTTAATTTGTTCAGCACATATTAAATGCATATGTGAAGCTGGG  300

seq1  CATTATTCTGATACCAAACAAACCAAGTTCAGCAATTAGTGACTAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTGATACCAAACAAACCAAGTTCAGCAATTAGTGACTAAAAAT  350

seq1  AAGGTGACCAAGAGTATGCTGTAAAATCATCTTTCTCATTTAGAAACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACCAAGAGTATGCTGTAAAATCATCTTTCTCATTTAGAAACCTA  400

seq1  AAGAGACAGATTTTTAAAAATATTTTTATTAGGTATTTTCTTCATTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGATTTTTAAAAATATTTTTATTAGGTATTTTCTTCATTTACA  450

seq1  TTTTCAATGATATTCCAAAAGTCCCCCATACCCTCCCCCCACTCCCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGATATTCCAAAAGTCCCCCATACCCTCCCCCCACTCCCCTAC  500

seq1  CCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  550

seq1  AAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCAGACTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCAGACTAGGC  600

seq1  CATCTTTTGATAAATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATAAATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  650

seq1  AGTTCATAATGTTGTTTCACCTATAGGGTTGCAGATCCCGTTAGCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAATGTTGTTTCACCTATAGGGTTGCAGATCCCGTTAGCTCCTT  700

seq1  GGGTACTTTCTCTAGCTCCTCCATTGGGGG--CCCTGTGATCCATCCAAT  748
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GGGTACTTTCTCTAGCTCCTCCATTGGGGGGCCCCTGTGATCCATCCAAT  750

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCT  800

seq1  CACAAGAGAGAGCTCTATCTGGG--TCCTTTCAGCAAAATTGCTAGTGTG  846
      |||||||||||||||||||||||  || ||||||||||||||||||||||
seq2  CACAAGAGAGAGCTCTATCTGGGGTTCTTTTCAGCAAAATTGCTAGTGTG  850

seq1  TGCAATGGTGTCAGCGTTTGGAAGC-TGATTAT-GGGATGGATCCCCAGA  894
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TGCAATGGTGTCAGCGTTTGGAAGCTTGATTATGGGGATGGATCCCCAGA  900

seq1  TATGGCAGTCTCTA  908
      ||||||||||||||
seq2  TATGGCAGTCTCTA  914