BAC Information

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BAC

Clone NameB6Ng01-179D23
Chromosome13 (Build37)
Map Location 62,608,781 - 62,609,926
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455
Downstream gene6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179D23.bB6Ng01-179D23.g
ACCGA006022GA006023
length1,1811,151
definitionB6Ng01-179D23.b B6Ng01-179D23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttatgggagagaaaccttatgaatgtcaccagtgggaaaaagcc
ttttcaagtcacagtaatctcctacaacctaaaggaagacatactggaga
gaaatgctatgaatgtgatctgtgtggtaaagccttttcacaacatagtc
ggcttaaaaggcatggaagaattcatactggagagaaaccctacaaatgt
gatcaatgtggtaaagccttttcagaacactgtaatctccaaaagcataa
aagaatacatacaggagagaaaccctacaaatgtcatcaatgtgacaaag
ccttttcccaacatcatagtctccaaaagcataaaagaatacatacagga
gagaaaccctacaaatgtaatgaatgtgataaagtatttagacaaagcag
tgatctccagaagcatagaagaatacatacaggagaaaaaccctacaaat
gtaatcagtgtgacaaagccttttcccaacatcatagtctccaaatacat
aagagaacacatacaggagagaaaccctataaatgtaatcaatgtgacaa
agtcttttccaggcatagtacgctccaaatacatataagaatacatgctg
gagagaaacccttcaaatgtaatgaatgtgagaaagccttttcacaacat
agtaacctccagtcgcatagaagaattcatactggaaagaaaccctacaa
atgtaatgaatgtgagaaagccttttcacaacatagtaacctccagtcac
atagaagaattcatactggaaagaaaccctacaaatgtaatacatgtgaa
aaagccttttcaaaacatagtatactccattcacatagaagaattcatac
tggagagaaatcctacaaatgtaatcactgtgagaaagtctttttaggac
attatgatcttcaaagacataaaggaatacatactggatagaaacccgat
gaatgttgatctatgtgtgaaaggcccatgtacgtcacagggaatctttc
aaagcataaaaaagaattcatactgtaaagaacggctatgaaatgtataa
taaataatgggtaaaatcctacaaaatattcaatagtcgtaatcttcatg
gaaccatatttgtatgaccagaacctctgatatactggttataaaacgta
tcctacaacacatttatatctcctcataatg
gaattcaggttagggggcagtggtcacggctgccacttgcctaaggcact
cagcaatagaagtcaaagcatatagcaccaactgcaaaagcctgctcagc
aatggaggtgaacggaacaaagcatatggaagaaccctcctcctcttctg
actggagggtcttcctggtgtttctcattggccagggaatcttgagtgac
actagcaccttccttagggttagactgtgctgaagggcacacagcaacat
taggtttcctggcccagctttcctgtgcaggagctgacccattatcacaa
tggcaagttttgcctttcagtatcacttttccctatctttcaatagccta
cctttctgtcttccaacactaagcaaggatttcttcccccaccccagctc
ctcctcctcccttctcctccaccttctcttcatacggttgcacctcctct
ttctgttctatttcttcttctcatgctctcccttcttttcatcttcttct
tggtctccttcttgttctttctcttatttttcgtcttcttttctacctgc
ccctcccccccttcttctcatgctaaacctccttgaatcaagatggagag
cttcaaaagtccattagtcattttatgatccatgcacagaatgattctcc
ttagaatcattaaaagttgaagagagattttaggacacaaaatacgatat
gtgagccaggtgtggtggcgcactcctttatcccagcactcgggaggcag
aggcaggaggattttctgagttcaaggccagcctggtttacagagtgagt
tccaggacagccagggctacacagagaaaccctgtctcgaaaaccaaaaa
taattaaaaaattaaaaaaatacggtgattctgtgatttcacacttccat
caaggaaaactgtaggtaatattcatctgctaacataatgtatgtgtctg
aaaatcaactgaagggagatcccagacttcagattactattgcaaaaacc
aagagggccttacttgttgcaagaaacatcatccacacaggggtcattca
ttcatgcaattagagactcagaacaaagccatgaaaccttttttatcgag
accaggcaaaccaatctaggatcaaaattcatgcatgggtactagggggt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62608781_62609926
seq2: B6Ng01-179D23.g_67_1217

seq1  GAATTCAGGTTAGGGGGCAGTGGTCACGGCTGCCACTTGCCTAAGGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTAGGGGGCAGTGGTCACGGCTGCCACTTGCCTAAGGCACT  50

seq1  CAGCAATAGAAGTCAAAGCATATAGCACCAACTGCAAAAGCCTGCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAGAAGTCAAAGCATATAGCACCAACTGCAAAAGCCTGCTCAGC  100

seq1  AATGGAGGTGAACGGAACAAAGCATATGGAAGAACCCTCCTCCTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGTGAACGGAACAAAGCATATGGAAGAACCCTCCTCCTCTTCTG  150

seq1  ACTGGAGGGTCTTCCTGGTGTTTCTCATTGGCCAGGGAATCTTGAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGGTCTTCCTGGTGTTTCTCATTGGCCAGGGAATCTTGAGTGAC  200

seq1  ACTAGCACCTTCCTTAGGGTTAGACTGTGCTGAAGGGCACACAGCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACCTTCCTTAGGGTTAGACTGTGCTGAAGGGCACACAGCAACAT  250

seq1  TAGGTTTCCTGGCCCAGCTTTCCTGTGCAGGAGCTGACCCATTATCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCCTGGCCCAGCTTTCCTGTGCAGGAGCTGACCCATTATCACAA  300

seq1  TGGCAAGTTTTGCCTTTCAGTATCACTTTTCCCTATCTTTCAATAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTTTTGCCTTTCAGTATCACTTTTCCCTATCTTTCAATAGCCTA  350

seq1  CCTTTCTGTCTTCCAACACTAAGCAAGGATTTCTTCCCCCACCCCAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTCTTCCAACACTAAGCAAGGATTTCTTCCCCCACCCCAGCTC  400

seq1  CTCCTCCTCCCTTCTCCTCCACCTTCTCTTCATACGGTTGCACCTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCCTTCTCCTCCACCTTCTCTTCATACGGTTGCACCTCCTCT  450

seq1  TTCTGTTCTATTTCTTCTTCTCATGCTCTCCCTTCTTTTCATCTTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTATTTCTTCTTCTCATGCTCTCCCTTCTTTTCATCTTCTTCT  500

seq1  TGGTCTCCTTCTTGTTCTTTCTCTTATTTTTCGTCTTCTTTTCTACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCTTCTTGTTCTTTCTCTTATTTTTCGTCTTCTTTTCTACCTGC  550

seq1  CCCTCCCCCCCTTCTTCTCATGCTAAACCTCCTTGAATCAAGATGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCCTTCTTCTCATGCTAAACCTCCTTGAATCAAGATGGAGAG  600

seq1  CTTCAAAAGTCCATTAGTCATTTTATGATCCATGCACAGAATGATTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAGTCCATTAGTCATTTTATGATCCATGCACAGAATGATTCTCC  650

seq1  TTAGAATCATTAAAAGTTGAAGAGAGATTTTAGGACACAAAATACGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCATTAAAAGTTGAAGAGAGATTTTAGGACACAAAATACGATAT  700

seq1  GTGAGCCAGGTGTGGTGGCGCACTCCTTTATCCCAGCACTCGGGAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAGGTGTGGTGGCGCACTCCTTTATCCCAGCACTCGGGAGGCAG  750

seq1  AGGCAGGAGGA-TTTCTGAGTTCAAGGCCAGCCTGGTTTACAGAGTGAGT  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGATTTTCTGAGTTCAAGGCCAGCCTGGTTTACAGAGTGAGT  800

seq1  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG-AAAACCAAAA  849

seq1  ATAAATTAAAAAATTAAAAAAATACGGTGATTCTGTGATTTCACACTTCC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AATTAAAAAATTAAAAAAATACGGTGATTCTGTGATTTCACACTTCC  898

seq1  ATC-AGGAAAACTGTAGGTAATATTCATCTGCT-ACATAATGTATGTGTC  947
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCAAGGAAAACTGTAGGTAATATTCATCTGCTAACATAATGTATGTGTC  948

seq1  TGAAAATC-ACTGAAGGAAGACCCCAGAC-TCAGA-TACTA-TGCAAAAA  993
      |||||||| |||||||| ||| ||||||| ||||| ||||| ||||||||
seq2  TGAAAATCAACTGAAGGGAGATCCCAGACTTCAGATTACTATTGCAAAAA  998

seq1  CAAAGAGGG-CTTACT--GTGC-AGAAACAATCAT-CACACAGGGGTCAA  1038
      | ||||||| ||||||   ||| |||||| ||||| ||||||||||||| 
seq2  CCAAGAGGGCCTTACTTGTTGCAAGAAAC-ATCATCCACACAGGGGTCAT  1047

seq1  TCATTCATTGAAATAGAGACCTCAG-ACAAAGGCATGAAACCTTTTTTAT  1087
      ||||||||  || |||||| ||||| |||||| |||||||||||||||||
seq2  TCATTCATGCAATTAGAGA-CTCAGAACAAAGCCATGAAACCTTTTTTAT  1096

seq1  CGAGAACCAGGGAAA-CAATCTAGGGTATCAAAAATTTCATTGGTGGGTA  1136
      |||| |||||| ||| |||||||||  |||||||  |||||   ||||||
seq2  CGAG-ACCAGGCAAACCAATCTAGG--ATCAAAA--TTCATGCATGGGTA  1141

seq1  CTAGGGGGTC  1146
      ||||||||||
seq2  CTAGGGGGTC  1151