BAC Information

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BAC

Clone NameB6Ng01-180B09
Chromosome13 (Build37)
Map Location 44,131,557 - 44,248,838
singlet/doubletdoublet
Overlap geneA730030A06
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
Downstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180B09.bB6Ng01-180B09.g
ACCGA006618GA006619
length1,1161,190
definitionB6Ng01-180B09.b B6Ng01-180B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,131,557 - 44,132,672)(44,247,697 - 44,248,838)
sequence
gaattcactaagacaataaatctacatacatggataatagatgtatccat
gattttgatgtatggccgacatcaacaattttttttttttttaccttttt
cagaacaccattgactgcaagtcaggactgtagagtgctacctaggatgt
gagttgcagccataacagaccaatttgtaataaaatgggggaggggtgct
gtatgggttgccctatctctgtaagacgcacatttaatgtaaaacacaac
atctagggctaaggtgtatctttcctgctgtatttctagaactgcctttt
tgcctgcttcctgggaagttctacttccgtacatattcccgcagcattca
taataaactttgtcacaattgattactaagcctggttgctgtgtgctctc
ctgggttgttctctttctggggactgtcttggcctatagaagtttccatt
ggtttcagagaatcgttgagtgataacttcccttctggctgtgctctcca
cgctttctggctctaggctctctgtagcatccttcttctgtacatgtcgg
ttgaatgattggtccctttgttcatccaatgcttactgagcccctgtaca
ttgctgtgcatggggagcacagaaagagaatcccacaagaccattagtga
atttataacttaatgaaggagataaatgataatttaatgatgtgagagca
actccaacacctctctactctctttttgcttgtttgcttttgaggccaga
tcttgactctggagtccgggctaagctgatctcaagatcctctcatggca
ctctggtttcagggtctggagggtgggctctccccccttctctctcacat
cctcggtacccagcacactgctgattattactcacaaattgagagttgtt
aacagatttctgaaacagaataagaggcatcaaggatatacaaggtggag
tctgaagctttgcttggggtggtgcagagcagcagtggggcagtaccaaa
tggggaaggagaggaaggggatgctttgtccccagctgcagtttagaaga
taaaaatgtttcctaacagcactgctgaatggcgatagccaaatgatggt
gtgggcacagaccgag
gaattcaactgggttgctacggagcaagaaagcaagaagacggagctggg
ggtctggggagagagagtcagcagatgtgagaagcgctgtgtctgtgaca
caggaagtcgtgaggcaggcgactctggtggtttagtgcctcttaggagg
gaaaatgttcgtaatgaaagttctgcttgacagatgataatggccctaga
gggaagcatgaaggaagacaagtgtgtactctgcattatccgaagtgcag
ttactggagaaagctgaatggcttgaggcttgtcactctgtctctagggg
aagaggcctgtggagtatacagtgacagactggtaagctggtgttgaact
attgagcgtacacacacacacacacacacacacacacacacacacacaca
gagccttacgttgtgcacttgctgatttcataatgtaaacactcctccca
tgcatggcccattcactgaccttgcatttgggagagatgtgcacactcag
ccctgcagcctctctggcatgtctcaacacagtctgaggaaggccttaca
gcagatcttgatgtgcacagatgccacaagtgtggtgaactcacacactc
actaacggctttcctgacaggatgttcctcctcccccttcccctccctcc
ccctcctcttcctcctcctcttcttcctcctcttcttctctttcttgaaa
agattttgccagaacttaaggagatctgtttattaagctggaaaaaaaaa
aaaagcaaagggatagaaaatctagagtactcctggtgtctgtatgaatg
cactcaaagtcatgtttgaagttcatgaacaaataaacctgccctctggg
ttcatcttctttccttcatggtttttttctttctccccaaagataggagg
atatgtttataggacacagaagatgtggcttaacatttattaacttacgt
agctttcagaactacttaacttcccttctggcttaatattctcatctggt
aaatggggcacaatttcatttaggaaaccccggcagggcccgctggtccg
aagttaaaatgttatatttctaaaaaatagtgccacactcattaaggaga
gtggtcctacaataaggtgtccgtctactgtcgctcaccggtcatctaat
tagtcactcaattctctggctttcttttaagtggaaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44131557_44132672
seq2: B6Ng01-180B09.b_46_1161

seq1  GAATTCACTAAGACAATAAATCTACATACATGGATAATAGATGTATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGACAATAAATCTACATACATGGATAATAGATGTATCCAT  50

seq1  GATTTTGATGTATGGCCGACATCAACAATTTTTTTTTTTTTTACCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGATGTATGGCCGACATCAACAATTTTTTTTTTTTTTACCTTTTT  100

seq1  CAGAACACCATTGACTGCAAGTCAGGACTGTAGAGTGCTACCTAGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACCATTGACTGCAAGTCAGGACTGTAGAGTGCTACCTAGGATGT  150

seq1  GAGTTGCAGCCATAACAGACCAATTTGTAATAAAATGGGGGAGGGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGCCATAACAGACCAATTTGTAATAAAATGGGGGAGGGGTGCT  200

seq1  GTATGGGTTGCCCTATCTCTGTAAGACGCACATTTAATGTAAAACACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTTGCCCTATCTCTGTAAGACGCACATTTAATGTAAAACACAAC  250

seq1  ATCTAGGGCTAAGGTGTATCTTTCCTGCTGTATTTCTAGAACTGCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGCTAAGGTGTATCTTTCCTGCTGTATTTCTAGAACTGCCTTTT  300

seq1  TGCCTGCTTCCTGGGAAGTTCTACTTCCGTACATATTCCCGCAGCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTCCTGGGAAGTTCTACTTCCGTACATATTCCCGCAGCATTCA  350

seq1  TAATAAACTTTGTCACAATTGATTACTAAGCCTGGTTGCTGTGTGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACTTTGTCACAATTGATTACTAAGCCTGGTTGCTGTGTGCTCTC  400

seq1  CTGGGTTGTTCTCTTTCTGGGGACTGTCTTGGCCTATAGAAGTTTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGTTCTCTTTCTGGGGACTGTCTTGGCCTATAGAAGTTTCCATT  450

seq1  GGTTTCAGAGAATCGTTGAGTGATAACTTCCCTTCTGGCTGTGCTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGAGAATCGTTGAGTGATAACTTCCCTTCTGGCTGTGCTCTCCA  500

seq1  CGCTTTCTGGCTCTAGGCTCTCTGTAGCATCCTTCTTCTGTACATGTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCTGGCTCTAGGCTCTCTGTAGCATCCTTCTTCTGTACATGTCGG  550

seq1  TTGAATGATTGGTCCCTTTGTTCATCCAATGCTTACTGAGCCCCTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGATTGGTCCCTTTGTTCATCCAATGCTTACTGAGCCCCTGTACA  600

seq1  TTGCTGTGCATGGGGAGCACAGAAAGAGAATCCCACAAGACCATTAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGCATGGGGAGCACAGAAAGAGAATCCCACAAGACCATTAGTGA  650

seq1  ATTTATAACTTAATGAAGGAGATAAATGATAATTTAATGATGTGAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACTTAATGAAGGAGATAAATGATAATTTAATGATGTGAGAGCA  700

seq1  ACTCCAACACCTCTCTACTCTCTTTTTGCTTGTTTGCTTTTGAGGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACACCTCTCTACTCTCTTTTTGCTTGTTTGCTTTTGAGGCCAGA  750

seq1  TCTTGACTCTGGAGTCCGGGCTAAGCTGATCTCAAGATCCTCTCATGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTCTGGAGTCCGGGCTAAGCTGATCTCAAGATCCTCTCATGGCA  800

seq1  CTCTGGTTTCAGGGTCTGGAGGGTGGGCTCTCCCCCCTTCTCTCTCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTCAGGGTCTGGAGGGTGGGCTCTCCCCCCTTCTCTCTCACAT  850

seq1  CCTCGGTACCCAGCACACTGCTGATTATTACTCACAAATTGAGAGTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTACCCAGCACACTGCTGATTATTACTCACAAATTGAGAGTTGTT  900

seq1  AACAGATTTCTGAAACAGGAATAAGAGGCATCAAGGATATACAAGGTGGA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACAGATTTCTGAAACA-GAATAAGAGGCATCAAGGATATACAAGGTGGA  949

seq1  GTCTGAAGC-TTGCTTGGGGTGGTGCAGGAGCAGGCAGTGGGGCAGTAGC  999
      ||||||||| ||||||||||||||||| ||||| |||||||||||||| |
seq2  GTCTGAAGCTTTGCTTGGGGTGGTGCA-GAGCA-GCAGTGGGGCAGTACC  997

seq1  AAATGGGGAAGGAGAGGAAAGGGGATGC-TTGTCCCCAGCTGCAGTTTAG  1048
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AAATGGGGAAGGAGAGG-AAGGGGATGCTTTGTCCCCAGCTGCAGTTTAG  1046

seq1  -AGAGAAAAATGTTCCCTACAGGCACTGCTG-ATGGCGATAGGCCAGAAG  1096
       ||| ||||||||| ||||   ||||||||| ||||||||| |||| | |
seq2  AAGATAAAAATGTTTCCTAACAGCACTGCTGAATGGCGATA-GCCAAATG  1095

seq1  ATGGTG-GGGCACAGAACGAG  1116
      |||||| ||||||||| ||||
seq2  ATGGTGTGGGCACAGACCGAG  1116

seq1: chr13_44247697_44248838
seq2: B6Ng01-180B09.g_71_1260 (reverse)

seq1  CACC-TCCA-TTAAAAGGAAGCAAG---AATGAGTGA-TAATTAGATGA-  43
      |||| |||| ||||||| |||| ||   | ||||||| ||||||||||| 
seq2  CACCTTCCACTTAAAAGAAAGCCAGAGAATTGAGTGACTAATTAGATGAC  50

seq1  CGGTGA-CGACAGT-GAC-GACAC----TTATCTGA-CACT-TCCT--AT  82
      |||||| ||||||| ||| |||||    || |  || |||| ||||  ||
seq2  CGGTGAGCGACAGTAGACGGACACCTTATTGTAGGACCACTCTCCTTAAT  100

seq1  GTGT-TGGCACTATTTT----GAATATAACATTTTAAC-TCTGA-CAGC-  124
      | || ||||||||||||     |||||||||||||||| || || |||| 
seq2  GAGTGTGGCACTATTTTTTAGAAATATAACATTTTAACTTCGGACCAGCG  150

seq1  GGCCCTGCCGGG--TTCCTAAATGAAA-TGTG-CCCATTTTACAGATGAG  170
      ||||||||||||  ||||||||||||| |||| |||||||  ||||||||
seq2  GGCCCTGCCGGGGTTTCCTAAATGAAATTGTGCCCCATTTACCAGATGAG  200

seq1  AATATTAAGGCAGAAGGG-AGTTAAGTAG-TCTG-AAGCTACGT-AGTTA  216
      ||||||||| |||||||| |||||||||| |||| ||||||||| |||||
seq2  AATATTAAGCCAGAAGGGAAGTTAAGTAGTTCTGAAAGCTACGTAAGTTA  250

seq1  ATAAATGTTAAGCCACATCTTCTGTGTCCTATAAACATAT-CTCCTATCT  265
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAAATGTTAAGCCACATCTTCTGTGTCCTATAAACATATCCTCCTATCT  300

seq1  TTGGGGAG-AAGAAAAAA--CATTGAGGGAAG-AGATG-ACCCAGA-GGC  309
      |||||||| |||||||||  |||  ||| ||| ||||| ||||||| |||
seq2  TTGGGGAGAAAGAAAAAAACCATGAAGGAAAGAAGATGAACCCAGAGGGC  350

seq1  AGGTTTATTTGTTCATG-ACTTC-AACATGAC-TTGAGTGCATTCATACA  356
      ||||||||||||||||| ||||| |||||||| |||||||||||||||||
seq2  AGGTTTATTTGTTCATGAACTTCAAACATGACTTTGAGTGCATTCATACA  400

seq1  GACACCAGGAGTACTCTAGA-TTTCTAT-CCTTTGC-TTTTTTTTTTTTC  403
      |||||||||||||||||||| ||||||| ||||||| |||||||||||||
seq2  GACACCAGGAGTACTCTAGATTTTCTATCCCTTTGCTTTTTTTTTTTTTC  450

seq1  CAGCTTAATAAACAGATCTCCTTAAGTTCTGGC-AAATCTTTTCAAGAAA  452
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCTTAATAAACAGATCTCCTTAAGTTCTGGCAAAATCTTTTCAAGAAA  500

seq1  GAGAAGAAGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGGGGAGGGAGGG  502
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGGGGAGGGAGGG  550

seq1  GAAGGGGGAGGAGGAACATCCTGTCAGGAAAGCCGTTAGTGAGTGTGTGA  552
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGAGGAGGAACATCCTGTCAGGAAAGCCGTTAGTGAGTGTGTGA  600

seq1  GTTCACCACACTTGTGGCATCTGTGCACATCAAGATCTGCTGTAAGGCCT  602
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCACACTTGTGGCATCTGTGCACATCAAGATCTGCTGTAAGGCCT  650

seq1  TCCTCAGACTGTGTTGAGACATGCCAGAGAGGCTGCAGGGCTGAGTGTGC  652
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACTGTGTTGAGACATGCCAGAGAGGCTGCAGGGCTGAGTGTGC  700

seq1  ACATCTCTCCCAAATGCAAGGTCAGTGAATGGGCCATGCATGGGAGGAGT  702
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCCCAAATGCAAGGTCAGTGAATGGGCCATGCATGGGAGGAGT  750

seq1  GTTTACATTATGAAATCAGCAAGTGCACAACGTAAGGCTCTGTGTGTGTG  752
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATTATGAAATCAGCAAGTGCACAACGTAAGGCTCTGTGTGTGTG  800

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGCTCAATAGTTCAACAC  802
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGCTCAATAGTTCAACAC  850

seq1  CAGCTTACCAGTCTGTCACTGTATACTCCACAGGCCTCTTCCCCTAGAGA  852
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACCAGTCTGTCACTGTATACTCCACAGGCCTCTTCCCCTAGAGA  900

seq1  CAGAGTGACAAGCCTCAAGCCATTCAGCTTTCTCCAGTAACTGCACTTCG  902
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGACAAGCCTCAAGCCATTCAGCTTTCTCCAGTAACTGCACTTCG  950

seq1  GATAATGCAGAGTACACACTTGTCTTCCTTCATGCTTCCCTCTAGGGCCA  952
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCAGAGTACACACTTGTCTTCCTTCATGCTTCCCTCTAGGGCCA  1000

seq1  TTATCATCTGTCAAGCAGAACTTTCATTACGAACATTTTCCCTCCTAAGA  1002
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCTGTCAAGCAGAACTTTCATTACGAACATTTTCCCTCCTAAGA  1050

seq1  GGCACTAAACCACCAGAGTCGCCTGCCTCACGACTTCCTGTGTCACAGAC  1052
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAACCACCAGAGTCGCCTGCCTCACGACTTCCTGTGTCACAGAC  1100

seq1  ACAGCGCTTCTCACATCTGCTGACTCTCTCTCCCCAGACCCCCAGCTCCG  1102
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCTTCTCACATCTGCTGACTCTCTCTCCCCAGACCCCCAGCTCCG  1150

seq1  TCTTCTTGCTTTCTTGCTCCGTAGCAACCCAGTTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTTTCTTGCTCCGTAGCAACCCAGTTGAATTC  1190