BAC Information

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BAC

Clone NameB6Ng01-180K08
Chromosome13 (Build37)
Map Location 107,066,595 - 107,067,644
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf180, Htr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180K08.bB6Ng01-180K08.g
ACCGA007022GA007023
length1,0471,198
definitionB6Ng01-180K08.b B6Ng01-180K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctaaaaattaccagaaattattagaagatgggaatctcattt
aaatgctaataaattttatttttttcacatagcagacactttctaagtta
accttatttggctataccttacagcaaaataataaagtagactttcaaaa
ggattttaacttctttcatatctagatgactataattatccctatgtcct
ctgaggcttacaatttgatagcatgccactcttaataaatagtccaactc
tgcaattctaatataatcctatcacagcttattattagatgatcattaac
acttaaacccaataatttattcttgccctccattaatatatactgtcatc
tcttattaaaaaaaaaattaaaggaaacagaggctgtgttctccctgaag
agacatgcagtttgtattaaattggcaaatagacctcacgaatagctcct
acatgtagaatccattttcatccaaacttctgccttgtataggtgacaat
aattgatgggacacagagagcccagtacacaccatgcagagaaagaaccc
acagaggcaatgctaatcccaaaggtggaaggagaaagaccattgaccca
aatcattctgacaaaattattgaagcaagcaattaattaaagcaagtctt
ttatttgtgtactcagtctgcctccctgcaaagcaggattcagaaggtcg
gcatttaaagagacgaagatagacaagaacatcataacaagttaatcaga
gtgacctcctgaaataaaaatatggttgccaggtgggtatagcaagttgt
cataacaagcagtcaaaataaggtagtcatataacctttgaaacaaaggt
aaggttgcaagatggttacaaacaatatttttgaagcaagacatgattac
cactcctggaacaggcagtacagaacaatttgaggttaaggttacaggtg
aggcatagcttaatccttgagaaacagaggtttagtcctaaacagggaaa
gaatatactttgtctttacaaaaagatggattttagcctaaatggag

gaattctttacatattttgaacattggcccattctgtaaactgctgcatt
tattgttgctcatcttgccttcactattggtgttctgttcaggaatgtgt
cttctgtgccactacattcaagtttattccccattttctctcctatcaga
ttcagtgtgtctggttttatgttgaggtctgtgacccacttacttggact
taagtttatttatttatttattttttatttttagtgcagggtgatatata
tggatctcttttcattcttttacatgtaaacatccagtttgaccaacact
gtttgttgaagatgcttttttttccactgtgtatttctgacaactgaagc
agatcaagagggatgcaaattggaaaggaagaagtcaatgtacttgttat
tttcaagagatatgattgcacacacacacacaatctcaaaaataccaatc
gggaaatcctacagctggtaaacactcgcagcgaaatggcaggatacatg
attaactaaaaaaaataaaaataaaaaaccagtattccttttattcacaa
actacaaatggactgagaaagaaataagggaaaatcaaacctttttcaat
agctttgaataatataaaataccatgaagttaaaactaataaaatatctt
ggggtacctctaactaagccagtgaaagacttacatgataaatactccaa
gtctttgaagaaaaaaattaaagaaaacatgagcaaatggaaagatctcc
cacacccatggatcagtaggaaaaacagtgaaaatggccacccaccaaaa
gcaatctacagattcaatgcaagccccaccaaaattccaacataattctt
tacagaccttgaaaggacaatactcaacttcatatggaaaaaaaagcaag
caagcaagcaacaaacaaacaaacgaaaacctccagtacaatgaaatcct
gtacaacaaaggtctgctggaagtatcaacattcctgatttcaagctgta
ctattagactatagtaaaaacaaaacaacaaacaaacaaaacacaaaaat
ccacttgtgttggctcagacattaaattcaaagaatatgatacctgaact
tttgggtacgagaataatttagtgaattggattttctttcatccactatc
ttcgaaattaaagttactggaattgggttcgtaatggggtgtggcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107066595_107067644
seq2: B6Ng01-180K08.b_47_1093

seq1  GAATTCCTCTAAAAATTACCAGAAATTATTAGAAGATGGGAATCTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAAAAATTACCAGAAATTATTAGAAGATGGGAATCTCATTT  50

seq1  AAATGCTAATAAATTTTATTTTTTTCACATAGCAGACACTTTCTAAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAATAAATTTTATTTTTTTCACATAGCAGACACTTTCTAAGTTA  100

seq1  ACCTTATTTGGCTATACCTTACAGCAAAATAATAAAGTAGACTTTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTTGGCTATACCTTACAGCAAAATAATAAAGTAGACTTTCAAAA  150

seq1  GGATTTTAACTTCTTTCATATCTAGATGACTATAATTATCCCTATGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAACTTCTTTCATATCTAGATGACTATAATTATCCCTATGTCCT  200

seq1  CTGAGGCTTACAATTTGATAGCATGCCACTCTTAATAAATAGTCCAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTTACAATTTGATAGCATGCCACTCTTAATAAATAGTCCAACTC  250

seq1  TGCAATTCTAATATAATCCTATCACAGCTTATTATTAGATGATCATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCTAATATAATCCTATCACAGCTTATTATTAGATGATCATTAAC  300

seq1  ACTTAAACCCAATAATTTATTCTTGCCCTCCATTAATATATACTGTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACCCAATAATTTATTCTTGCCCTCCATTAATATATACTGTCATC  350

seq1  TCTTATTAAAAAAAAAATTAAAGGAAACAGAGGCTGTGTTCTCCCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTAAAAAAAAAATTAAAGGAAACAGAGGCTGTGTTCTCCCTGAAG  400

seq1  AGACATGCAGTTTGTATTAAATTGGCAAATAGACCTCACGAATAGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCAGTTTGTATTAAATTGGCAAATAGACCTCACGAATAGCTCCT  450

seq1  ACATGTAGAATCCATTTTCATCCAAACTTCTGCCTTGTATAGGTGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGAATCCATTTTCATCCAAACTTCTGCCTTGTATAGGTGACAAT  500

seq1  AATTGATGGGACACAGAGAGCCCAGTACACACCATGCAGAGAAAGAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGGGACACAGAGAGCCCAGTACACACCATGCAGAGAAAGAACCC  550

seq1  ACAGAGGCAATGCTAATCCCAAAGGTGGAAGGAGAAAGACCATTGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAATGCTAATCCCAAAGGTGGAAGGAGAAAGACCATTGACCCA  600

seq1  AATCATTCTGACAAAATTATTGAAGCAAGCAATTAATTAAAGCAAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTGACAAAATTATTGAAGCAAGCAATTAATTAAAGCAAGTCTT  650

seq1  TTATTTGTGTACTCAGTCTGCCTCCCTGCAAAGCAGGATTCAGAAGGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTGTACTCAGTCTGCCTCCCTGCAAAGCAGGATTCAGAAGGTCG  700

seq1  GCATTTAAAGAGAGGAAGATAGACAAGAACATCATAACAAGTTAATCAGA  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAGAGACGAAGATAGACAAGAACATCATAACAAGTTAATCAGA  750

seq1  GTGACCTCCTGAAATAAAAATATGGTTGCCAGGTGGGTATAGCAAGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCCTGAAATAAAAATATGGTTGCCAGGTGGGTATAGCAAGTTGT  800

seq1  CATAACAAGCAGTCAAAATAAGGTAGTCATATAACCTTTGAAACAAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAAGCAGTCAAAATAAGGTAGTCATATAACCTTTGAAACAAAGGT  850

seq1  AAGGTTGCAAGATGGTTACAAACAATATTTTTGAAGCAAAGACATGATTA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGTTGCAAGATGGTTACAAACAATATTTTTGAAGC-AAGACATGATTA  899

seq1  CCACTCCTGGAACAGGCAGTACAGAACAATTTGAGGTTAAGGTTACAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGGAACAGGCAGTACAGAACAATTTGAGGTTAAGGTTACAGGT  949

seq1  GAGGCATAGCTTAATCCTTGAGAAACAGAGGTTTAGTCCTAAACA-GGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGCATAGCTTAATCCTTGAGAAACAGAGGTTTAGTCCTAAACAGGGAA  999

seq1  AGAATATACTTTGTCTTTACAAAAAGATGGATTTTTAAGCCTAAAATGGA  1049
      |||||||||||||||||||||||||||||||||||  ||||| |||||||
seq2  AGAATATACTTTGTCTTTACAAAAAGATGGATTTT--AGCCT-AAATGGA  1046

seq1  G  1050
      |
seq2  G  1047


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