BAC Information

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BAC

Clone NameB6Ng01-181D20
Chromosome13 (Build37)
Map Location 22,848,827 - 22,983,962
singlet/doubletdoublet
Overlap geneV1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Upstream geneLOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181D20.bB6Ng01-181D20.g
ACCGA007455GA007456
length1,1231,014
definitionB6Ng01-181D20.b B6Ng01-181D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,982,824 - 22,983,962)(22,848,827 - 22,849,466)
sequence
gaattcacatctgatcccataaaattgctcagaaatctgtggcagaggtg
ggatgttcatagtcctaatatgaaggctaaggctatcgttttgttaaatg
cacaatgatgcacatatcagattattaaatatgttctaaaacctttctat
aagttttagtaacagaatcttctctttgcagtaggcaacggttgcttcaa
agcttcataactagacaaattggacatagacaattttataatcattaaca
tttgtcaatcatattttttgtcttcctgtgatgttgattatggtgtaatt
ggtataatttagaacaagatccaattcactctatgatttcaaatttgtat
agcttgtaagtaaggactttcattttatacagcatcatcttattatcata
aattcagtactattaattttgacataatttttaataatcctttcattata
agaagaggcatgaggtccagcaagaaggctttgaggttaaagccacctgg
tgcttggaatccatgtgttagaaggagagaatagacaactgaaaactatc
ctctatcttccacacaaaccatgacaggtacacacacacactaaataaat
ctttaaaaagttaaaaaaaaaaaaagacttgaagagtgaaatatataatt
ctgcatttagcatgagtgagaatctgcatttatctaagcattacatgtac
acaccacacacagatatagatgcacacaaagactcacacagacagacaga
ccgacacacaccttagacaaatagaaagtgaagaggtgaaatttgaatcc
agtatctctggctccaatttgctctaatttatctctttttccaaaccaat
ataatggaaaaataattatcactataacaataacgtgattgtggataact
tatagcattttaatctatggattgagatgttgtacataagaaaaataatt
aagtagacatgattgacactgaacatttgcttctaaatatatttgcctat
ttacctatttattcttctataggcaacaacatgtgtttctgtgtgtactc
tgagcactcaaaccttcaagacaagtacaattcttctagagcctaatggc
aatcttgatcttcaatcactaga
gaattcctgatctttccaaagctttaaaaatgaaggggtgttgggtttca
tcaaaggctttttcaacatctattaagatgaagatgtaattttattttga
gtttgtttatgtagtggattacattgatggatttctgtatattgaacgaa
ccatccttgcttccctaggatgagccctcctggatcatggtgaatgatag
tttttatgtgttcttggaatcggtttgtgggaatcttattgagtagtttt
tgcttcggtattcattaagggagtttggtctgaagttctttttcattgtt
gggtctttgtgtggcttttttgtgtggcttaggagtcagcataactatgg
cttcatggaaggaattaagtagtattccttttgtttctattttgtgggat
attttgggaagttttgatattagacattctttgaagatctgctagaattc
ttcactaaaatcatctggccatagactccatttttagttaggagattttt
ctatttccttagggtttacgggactgtttagaaattttatctggtcctta
tctaactgtggtacctgtttcctatctagaaaatcatccatttcatctac
attttccagttttgttgagtatatgcttttgtagtagaatgtgatgattt
tttgaatttcctctgtttctgttgttatggctctttttccttttctgatt
ttgttaatttgaatactatacctttgccctttaataagtttggctatggg
tttaattattgggtttattttgtctaagaaccagttcttaatttggactt
agtagacttcattccatgagttctaaacacatttgtcattctaaagcttg
gcttctcagcagatggaagggattagattcatacttattaaagccattga
atatccaaaatatgacatagttacattaaaacagagtatgttagttgaaa
aatagaatatcaaagtactccggagtaattatgctcttctacttttaaga
aacggttcttacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22982824_22983962
seq2: B6Ng01-181D20.b_44_1166 (reverse)

seq1  TCTAGTGAATTTGAAGATTCAAGATTGCCAATTAGGCTTCTAGAAGAATT  50
      ||||||||  ||||||| ||||||||||| ||||||| |||||||||| |
seq2  TCTAGTGA--TTGAAGA-TCAAGATTGCC-ATTAGGC-TCTAGAAGAA-T  44

seq1  TGTACTTTGTCCTGAAGTTTGGAGTGCTCAGGAGTACACACCAGAAACAC  100
      ||||| ||||| ||||| || ||||||||| ||||||||| |||||||||
seq2  TGTAC-TTGTCTTGAAGGTTTGAGTGCTCA-GAGTACACA-CAGAAACAC  91

seq1  ATGTTTGTTG-CTATAGAAAAGAAATAAAAATAGGTAAATAGGCAAATAT  149
      ||| |||||| |||||||| |     | ||||||||||||||||||||||
seq2  ATG-TTGTTGCCTATAGAAGA-----ATAAATAGGTAAATAGGCAAATAT  135

seq1  ATTTAGAAGGCAAATTGTTCAGTGTCAATCATGTCTACTTAATTATTTTT  199
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTAGAA-GCAAA-TGTTCAGTGTCAATCATGTCTACTTAATTATTTTT  183

seq1  CTTATGTACAACATCTCAATCCATAGATTAAAATGCTATAAGTTATCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTACAACATCTCAATCCATAGATTAAAATGCTATAAGTTATCCAC  233

seq1  AATCACGTTATTGTTATAGTGATAATTATTTTTCCATTATATTGGTTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGTTATTGTTATAGTGATAATTATTTTTCCATTATATTGGTTTGG  283

seq1  AAAAAGAGATAAATTAGAGCAAATTGGAGCCAGAGATACTGGATTCAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGATAAATTAGAGCAAATTGGAGCCAGAGATACTGGATTCAAAT  333

seq1  TTCACCTCTTCACTTTCTATTTGTCTAAGGTGTGTGTCGGTCTGTCTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTTCACTTTCTATTTGTCTAAGGTGTGTGTCGGTCTGTCTGTC  383

seq1  TGTGTGAGTCTTTGTGTGCATCTATATCTGTGTGTGGTGTGTACATGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCTTTGTGTGCATCTATATCTGTGTGTGGTGTGTACATGTAA  433

seq1  TGCTTAGATAAATGCAGATTCTCACTCATGCTAAATGCAGAATTATATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGATAAATGCAGATTCTCACTCATGCTAAATGCAGAATTATATAT  483

seq1  TTCACTCTTCAAGTCTTTTTTTTTTTTTAACTTTTTAAAGATTTATTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTTCAAGTCTTTTTTTTTTTTTAACTTTTTAAAGATTTATTTAG  533

seq1  TGTGTGTGTGTACCTGTCATGGTTTGTGTGGAAGATAGAGGATAGTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACCTGTCATGGTTTGTGTGGAAGATAGAGGATAGTTTTC  583

seq1  AGTTGTCTATTCTCTCCTTCTAACACATGGATTCCAAGCACCAGGTGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTATTCTCTCCTTCTAACACATGGATTCCAAGCACCAGGTGGCT  633

seq1  TTAACCTCAAAGCCTTCTTGCTGGACCTCATGCCTCTTCTTATAATGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCAAAGCCTTCTTGCTGGACCTCATGCCTCTTCTTATAATGAAA  683

seq1  GGATTATTAAAAATTATGTCAAAATTAATAGTACTGAATTTATGATAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTAAAAATTATGTCAAAATTAATAGTACTGAATTTATGATAATA  733

seq1  AGATGATGCTGTATAAAATGAAAGTCCTTACTTACAAGCTATACAAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGCTGTATAAAATGAAAGTCCTTACTTACAAGCTATACAAATTT  783

seq1  GAAATCATAGAGTGAATTGGATCTTGTTCTAAATTATACCAATTACACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATAGAGTGAATTGGATCTTGTTCTAAATTATACCAATTACACCA  833

seq1  TAATCAACATCACAGGAAGACAAAAAATATGATTGACAAATGTTAATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACATCACAGGAAGACAAAAAATATGATTGACAAATGTTAATGAT  883

seq1  TATAAAATTGTCTATGTCCAATTTGTCTAGTTATGAAGCTTTGAAGCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTGTCTATGTCCAATTTGTCTAGTTATGAAGCTTTGAAGCAAC  933

seq1  CGTTGCCTACTGCAAAGAGAAGATTCTGTTACTAAAACTTATAGAAAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCCTACTGCAAAGAGAAGATTCTGTTACTAAAACTTATAGAAAGGT  983

seq1  TTTAGAACATATTTAATAATCTGATATGTGCATCATTGTGCATTTAACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACATATTTAATAATCTGATATGTGCATCATTGTGCATTTAACAA  1033

seq1  AACGATAGCCTTAGCCTTCATATTAGGACTATGAACATCCCACCTCTGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATAGCCTTAGCCTTCATATTAGGACTATGAACATCCCACCTCTGCC  1083

seq1  ACAGATTTCTGAGCAATTTTATGGGATCAGATGTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCTGAGCAATTTTATGGGATCAGATGTGAATTC  1123

seq1: chr13_22848827_22849466
seq2: B6Ng01-181D20.g_426_1077

seq1  AATTAAGTAGTATTCCTTTTGTTTCTATTTTGTGGGATATTTTGGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTAGTATTCCTTTTGTTTCTATTTTGTGGGATATTTTGGGAAGT  50

seq1  TTTGATATTAGACATTCTTTGAAGATCTGCTAGAATTCTTCACTAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTAGACATTCTTTGAAGATCTGCTAGAATTCTTCACTAAAATC  100

seq1  ATCTGGCCATAGACTCCATTTTTAGTTAGGAGATTTTTCTATTTCCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCATAGACTCCATTTTTAGTTAGGAGATTTTTCTATTTCCTTAG  150

seq1  GGTTTACGGGACTGTTTAGAAATTTTATCTGGTCCTTATCTAACTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACGGGACTGTTTAGAAATTTTATCTGGTCCTTATCTAACTGTGGT  200

seq1  ACCTGTTTCCTATCTAGAAAATCATCCATTTCATCTACATTTTCCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCCTATCTAGAAAATCATCCATTTCATCTACATTTTCCAGTTT  250

seq1  TGTTGAGTATATGCTTTTGTAGTAGAATGTGATGATTTTTTGAATTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTATATGCTTTTGTAGTAGAATGTGATGATTTTTTGAATTTCCT  300

seq1  CTGTTTCTGTTGTTATGGCTCTTTTTCCTTTTCTGATTTTGTTAATTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGTTGTTATGGCTCTTTTTCCTTTTCTGATTTTGTTAATTTGA  350

seq1  ATACTATACCTTTGCCCTTTAATAAGTTTGGCTATGGGTTTAATTATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATACCTTTGCCCTTTAATAAGTTTGGCTATGGGTTTAATTATTGG  400

seq1  GTTTATTTTGTCTAAGAACCAGTTCTTAATTTGGACTTAGTAGACTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTGTCTAAGAACCAGTTCTTAATTTGGACTTAGTAGACTTCAT  450

seq1  TCCATGAGTTCTAAACACATTTGTCATTCTAAAGCTTGGC-TCTCAGCAG  499
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATGAGTTCTAAACACATTTGTCATTCTAAAGCTTGGCTTCTCAGCAG  500

seq1  ATGGAAGGGATTAGATTCATAC-TAATAAAG-CATTGAATATCCAAAATA  547
      |||||||||||||||||||||| || ||||| ||||||||||||||||||
seq2  ATGGAAGGGATTAGATTCATACTTATTAAAGCCATTGAATATCCAAAATA  550

seq1  TGACAAAG-TACATT-AAACAGAGAAT-TTAG-TGAAAAATAG-ATA-CA  591
      ||||| || |||||| |||||||| || |||| |||||||||| ||| ||
seq2  TGACATAGTTACATTAAAACAGAGTATGTTAGTTGAAAAATAGAATATCA  600

seq1  AAG-AC-ACAGAGTAATAATGCTCTT-TACTTTTAAAGAACGGTTCTTAC  638
      ||| ||  | ||||||| |||||||| |||||||||  ||||||||||||
seq2  AAGTACTCCGGAGTAATTATGCTCTTCTACTTTTAAGAAACGGTTCTTAC  650

seq1  AA  640
      ||
seq2  AA  652