BAC Information

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BAC

Clone NameB6Ng01-182C07
Chromosome13 (Build37)
Map Location 13,524,733 - 13,732,576
singlet/doubletdoublet
Overlap geneLOC664960, Nid1, Lyst
Upstream geneHeatr1, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182C07.bB6Ng01-182C07.g
ACCGA008118GA008119
length1,077988
definitionB6Ng01-182C07.b B6Ng01-182C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,731,495 - 13,732,576)(13,524,733 - 13,525,728)
sequence
gaattcacctgatcaaaattcatgttcctgtgatttaaatcaatgccctg
gtcccacccaacaagcacccgtttctgctaaccagacctaagaacacagc
acatggattcataccttctcagtcacagcatcaccagggcccaaatctgc
tgaatgattccccagggctactcgaagcagggcatcaaataaaggctttg
ctaattctgtttctgccacctttgactgggaaaggtgttccctcagttca
cacaatatattttccacagacaagccctaaggtaaaatgaaagactaaga
atatcaataacacacattttaaaagtgacagaaaggattacaagaagcag
ggaaaaatccatttatttgtaattaatatgaaggtaaactgactgcaaaa
aaaaaaaaatctgagttcttatccaaataatgtactgttaaaattctgtt
taatcataaaaaatccactcttagcagggtggtggtaataaaagccttta
atcctagcacatatgaggcagaatcaggtggatctctgagttcaggccag
cctggtctacagagcaagtttcagaacagccagcactacacagagaaacc
ctgtcttgaaaaaaatataattccactttttggaggctggggagatggct
cagtggttaagagtccttgcagaggaccaaaattccatttccaacacttt
tatggcagcacacaactgtttgtaactgcagttccatggaatccaatacc
ctctcttttgacctccccagacactttgcacacatagtgtacagacatat
gtccacgcaaaatagcatacatataaaaataaataaatcttaaattttta
ccaagtcattctttgaaacttcagaatattagttatctctagagtttaca
aattccttattcttaaaggttctctaagattctaagaagcagttctaatt
attttttcttttgccttcagttctaccctttgatgaagctattacgcttg
cctagctcttctataacagtagattaaaaacaaaaaaccttatctttctt
gagattgccagtctaaaaagttaaaca
gaattcaaatagggcaggaatctggaggcagaagctggtgtagaggccat
ggaggaatgctgctcgctggcttgctctccatggcttgctcagccctcta
gtgatacccatgaccaactgcccagggttgccaccaccccaatatactgg
atgctcccacatcaaattattaattaagaaaatgtcctactgactgatcc
ttggatcaatcttatggaggcattttctcaactgagattccctcctctca
gatataactctagcctgcgtcaagttgacacagagctagccagaacactg
tttgggtcccctgagatcttgtaagcaacatctagacatggatagaacta
tatcttctggagagttacagacaattgtgagctgtcagatgtggctgctg
ggaaccaaactttgagcctctgcaagaacaatagacaaacttaactgatg
aactatctctccgctcccaccttgttttttgagatagaaccttacgttgg
cctggaaagtgccaaaaacaaacaccaggacctccctccctggaccctac
ctctctggtgctggaatcacaagcatgggtcactgcgcctatcttcattt
tttaaacttagattttaaaaagaaatgtttatagcattgcagatcaacta
agacccttgtttatactaagtgcatgatctaccatgaagctgtactccta
gcccacatttttttaaaaaagggtgtattatggaattatatgttcgtttg
ttgctagtgaagttatcaaattattcttaaaagcatcatcaatgccttta
gtggggacacacatctgtaatcccagtgcttggaaagctgagcaggatgg
ttgctgtgagttgaggccagcctgaactacatgagcaccagagaggtcac
ctcacaaatatcacccagcattcaaacagtattattaaagtttcatttta
tttccattctaatgtgtgtagtgtgtgtatgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13731495_13732576
seq2: B6Ng01-182C07.b_42_1118 (reverse)

seq1  TGTTTTACTTTTTAGACTTGGCATTCCTTCAAAGAAAGATAAGGTTTTTT  50
      ||||| ||||||||||| ||||| ||  || |||||||||||||||||||
seq2  TGTTTAACTTTTTAGAC-TGGCAATC--TC-AAGAAAGATAAGGTTTTTT  46

seq1  GTTTTTTAATCTACTGTTATAG-AGAGCTAGGCAAGCGTAATAGCTTCAT  99
      | |||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  G-TTTTTAATCTACTGTTATAGAAGAGCTAGGCAAGCGTAATAGCTTCA-  94

seq1  TCAAAGGGTAGAACTGAAGGCAAAAGAAAAAATAATTAGAACTGCTTCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGTAGAACTGAAGGCAAAAGAAAAAATAATTAGAACTGCTTCTT  144

seq1  AGAATCTTAGAGAACCTTTAAGAATAAGGAATTTGTAAACTCTAGAGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTAGAGAACCTTTAAGAATAAGGAATTTGTAAACTCTAGAGATA  194

seq1  ACTAATATTCTGAAGTTTCAAAGAATGACTTGGTAAAAATTTAAGATTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTCTGAAGTTTCAAAGAATGACTTGGTAAAAATTTAAGATTTA  244

seq1  TTTATTTTTATATGTATGCTATTTTGCGTGGACATATGTCTGTACACTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATATGTATGCTATTTTGCGTGGACATATGTCTGTACACTAT  294

seq1  GTGTGCAAAGTGTCTGGGGAGGTCAAAAGAGAGGGTATTGGATTCCATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAAGTGTCTGGGGAGGTCAAAAGAGAGGGTATTGGATTCCATGG  344

seq1  AACTGCAGTTACAAACAGTTGTGTGCTGCCATAAAAGTGTTGGAAATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGTTACAAACAGTTGTGTGCTGCCATAAAAGTGTTGGAAATGGA  394

seq1  ATTTTGGTCCTCTGCAAGGACTCTTAACCACTGAGCCATCTCCCCAGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCCTCTGCAAGGACTCTTAACCACTGAGCCATCTCCCCAGCCT  444

seq1  CCAAAAAGTGGAATTATATTTTTTTCAAGACAGGGTTTCTCTGTGTAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGTGGAATTATATTTTTTTCAAGACAGGGTTTCTCTGTGTAGTG  494

seq1  CTGGCTGTTCTGAAACTTGCTCTGTAGACCAGGCTGGCCTGAACTCAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTCTGAAACTTGCTCTGTAGACCAGGCTGGCCTGAACTCAGAG  544

seq1  ATCCACCTGATTCTGCCTCATATGTGCTAGGATTAAAGGCTTTTATTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGATTCTGCCTCATATGTGCTAGGATTAAAGGCTTTTATTACC  594

seq1  ACCACCCTGCTAAGAGTGGATTTTTTATGATTAAACAGAATTTTAACAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGCTAAGAGTGGATTTTTTATGATTAAACAGAATTTTAACAGT  644

seq1  ACATTATTTGGATAAGAACTCAGATTTTTTTTTTTTTGCAGTCAGTTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTGGATAAGAACTCAGATTTTTTTTTTTTTGCAGTCAGTTTAC  694

seq1  CTTCATATTAATTACAAATAAATGGATTTTTCCCTGCTTCTTGTAATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTAATTACAAATAAATGGATTTTTCCCTGCTTCTTGTAATCCT  744

seq1  TTCTGTCACTTTTAAAATGTGTGTTATTGATATTCTTAGTCTTTCATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCACTTTTAAAATGTGTGTTATTGATATTCTTAGTCTTTCATTTT  794

seq1  ACCTTAGGGCTTGTCTGTGGAAAATATATTGTGTGAACTGAGGGAACACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGGCTTGTCTGTGGAAAATATATTGTGTGAACTGAGGGAACACC  844

seq1  TTTCCCAGTCAAAGGTGGCAGAAACAGAATTAGCAAAGCCTTTATTTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTCAAAGGTGGCAGAAACAGAATTAGCAAAGCCTTTATTTGAT  894

seq1  GCCCTGCTTCGAGTAGCCCTGGGGAATCATTCAGCAGATTTGGGCCCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTTCGAGTAGCCCTGGGGAATCATTCAGCAGATTTGGGCCCTGG  944

seq1  TGATGCTGTGACTGAGAAGGTATGAATCCATGTGCTGTGTTCTTAGGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTGACTGAGAAGGTATGAATCCATGTGCTGTGTTCTTAGGTCT  994

seq1  GGTTAGCAGAAACGGGTGCTTGTTGGGTGGGACCAGGGCATTGATTTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAGAAACGGGTGCTTGTTGGGTGGGACCAGGGCATTGATTTAAA  1044

seq1  TCACAGGAACATGAATTTTGATCAGGTGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TCACAGGAACATGAATTTTGATCAGGTGAATTC  1077

seq1: chr13_13524733_13525728
seq2: B6Ng01-182C07.g_62_1049

seq1  GAATTCAAATAGGGCAGGAATCTGGAGGCAGAAGCTGGTGTAGAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGGGCAGGAATCTGGAGGCAGAAGCTGGTGTAGAGGCCAT  50

seq1  GGAGGAATGCTGCTCGCTGGCTTGCTCTCCATGGCTTGCTCAGCCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATGCTGCTCGCTGGCTTGCTCTCCATGGCTTGCTCAGCCCTCTA  100

seq1  GTGATACCCATGACCAACTGCCCAGGGTTGCCACCACCCCAATATACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCCATGACCAACTGCCCAGGGTTGCCACCACCCCAATATACTGG  150

seq1  ATGCTCCCACATCAAATTATTAATTAAGAAAATGTCCTACTGACTGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCACATCAAATTATTAATTAAGAAAATGTCCTACTGACTGATCC  200

seq1  TTGGATCAATCTTATGGAGGCATTTTCTCAACTGAGATTCCCTCCTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAATCTTATGGAGGCATTTTCTCAACTGAGATTCCCTCCTCTCA  250

seq1  GATATAACTCTAGCCTGCGTCAAGTTGACACAGAGCTAGCCAGAACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAACTCTAGCCTGCGTCAAGTTGACACAGAGCTAGCCAGAACACTG  300

seq1  TTTGGGTCCCCTGAGATCTTGTAAGCAACATCTAGACATGGATAGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCCCCTGAGATCTTGTAAGCAACATCTAGACATGGATAGAACTA  350

seq1  TATCTTCTGGAGAGTTACAGACAATTGTGAGCTGTCAGATGTGGCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTGGAGAGTTACAGACAATTGTGAGCTGTCAGATGTGGCTGCTG  400

seq1  GGAACCAAACTTTGAGCCTCTGCAAGAACAATAGACAAACTTAACTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAAACTTTGAGCCTCTGCAAGAACAATAGACAAACTTAACTGATG  450

seq1  AACTATCTCTCCGCTCCCACCTTGTTTTTTGAGATAGAACCTTACGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTCTCCGCTCCCACCTTGTTTTTTGAGATAGAACCTTACGTTGG  500

seq1  CCTGGAAAGTGCCAAAAACAAACACCAGGACCTCCCTCCCTGGACCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAGTGCCAAAAACAAACACCAGGACCTCCCTCCCTGGACCCTAC  550

seq1  CTCTCTGGTGCTGGAATCACAAGCATGGGTCACTGCGCCTATCTTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGTGCTGGAATCACAAGCATGGGTCACTGCGCCTATCTTCATTT  600

seq1  TTTAAACTTAGATTTTAAAAAGAAATGTTTATAGCATTGCAGATCAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTAGATTTTAAAAAGAAATGTTTATAGCATTGCAGATCAACTA  650

seq1  AGACCCTTGTTTATACTAAGTGCATGATCTACCATGAAGCTGTACTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTGTTTATACTAAGTGCATGATCTACCATGAAGCTGTACTCCTA  700

seq1  GCCCACATTTTTTTAAAAAAGGGTGTATTATGGAATTATATGTTCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATTTTTTTAAAAAAGGGTGTATTATGGAATTATATGTTCGTTTG  750

seq1  TTGCTAGTGAAGTTATCAAATTATTCTTAAAAGCATCATCAATGCCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTGAAGTTATCAAATTATTCTTAAAAGCATCATCAATGCCTTTA  800

seq1  GTGGGGACACACATCTGTAATCCCAGTGCTTGGAAAGCTGAGGCAGGATG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGGGACACACATCTGTAATCCCAGTGCTTGGAAAGCTGA-GCAGGATG  849

seq1  GTTGCTGTGAGTTTGAGGCCAGCCTGAACTACATGAGCACCAGAGAGGTC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTGAG-TTGAGGCCAGCCTGAACTACATGAGCACCAGAGAGGTC  898

seq1  AACCTCAACAAAATATCACCCCAGCATTCAAAACAGTATTATTAAAGTTT  950
       ||||||   |||||||| |||||||||| ||||||||||||||||||||
seq2  -ACCTCA--CAAATATCA-CCCAGCATTC-AAACAGTATTATTAAAGTTT  943

seq1  CATTTTTATTTCCATTCTAATGTGTGTAGTGTGTGTATGTGTGTGT  996
      || |||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTTTATTTCCATTCTAATGTGTGTAGTGTGTGTATGTGTGTGT  988