BAC Information

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BAC

Clone NameB6Ng01-182E21
Chromosome13 (Build37)
Map Location 81,469,634 - 81,584,510
singlet/doubletdoublet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182E21.bB6Ng01-182E21.g
ACCGA008232GA008233
length1,178410
definitionB6Ng01-182E21.b B6Ng01-182E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,469,634 - 81,470,772)(81,584,101 - 81,584,510)
sequence
gaattcatacacccgaggctgactctttctgttgaggacgtatctaccgg
acctgacctattgaccaagatagtttggcagcttgtgccttttagtgaaa
gtctaatcattaaataaaccatatttcttcatcttaataaacttcaaaaa
actctaaatccctcttgtcactcacatactgaaaccatccactgctggaa
ttacttgtgctctggaaccctttttaattagggaactacaaaccagctat
ggtcactaaaatgtgtttaatcttttggtcaaatgcaaatattgtttgtg
tagatgatatgaaactggaatagatgaattcatatggtgaatgtagactt
ctaaaggttgaatgagagactgacatgtcctttgcatggcatgggcagtt
tataagtctgaatatgacttgtgtgggatcctaggtcaaagacactggaa
ccaatcaatatcttgctgtccttggtcatccgggtgctgctgcacctcat
tatgatgtcattgctctttgctcaggctgggatataatactttgtcctgt
gtagccaattataaactgcatcacactacgacacactgaggattagcttc
aggtctagggtcgcgggggagatgttcataaggtccatgtctattctttg
aatgttgttttagatacagctagaaacgtgacctgcaaagctaagcacac
ataaattgcaattgctccaacatgctcgacaaacaaataaggtgctccag
tcaagcatgccaggtaatggaattctctctcttttcgaagcctatgacca
aactcagcatgtgaccatccgatataaagagtaagctgggtcagctcata
atttaaatattgatatttttaaatacatgttcacttcctttgcatttaaa
tgagaattttttttggaaaaactgaatacctagactttgtcattatataa
tttctttccattttcctaagagtcatcttgtttacttttggatccaaatt
actccacttgaggatcactgatcttaaaataaaacaccaaaacttgaacc
ttttcctgaggttcttcttattcccaatccagtttgaacctccatttctt
ttttccccctctcttgtatttcttacagatattttcagtattccacaggt
gaatctgctatatcagccaatccaattg
gaattctcctatttctgcttgatttacaattgagggggaaggctatttat
cgtccgagtatccttgaaataagtgaaaattggcttaaaggcacagaaaa
ttattcgaaaaagatgattaattaaaaatttactgaatacatgtccatgt
acttttgtagccttgttcgtggcccaggggtttcaggggacatcacagtg
aactggaagatattgcctccttccaggggggagtttgtggagacatcagg
actactgacgatgctggatggacaaactgctgccgcgccacttattcagg
gaccggtgcacctgccttctgttatcccttgtgtgtgtgtggatgtgcgc
atatgtgggtataagtgtgcatgtgtgtgtgcatgtgtgtgtgtgtgtaa
ttggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81469634_81470772
seq2: B6Ng01-182E21.b_68_1216

seq1  TGTTGAGGACGTATCTACCGGACCTGAGCTATTTACACAAGAAAGTTTGG  50
      ||||||||||||||||||||||||||| ||||| || ||||| |||||||
seq2  TGTTGAGGACGTATCTACCGGACCTGACCTATTGAC-CAAGATAGTTTGG  49

seq1  TAGCTTGTGCCTTTAAGTGAAAGTCTAGTCATTAAATAAATAATATTTTT  100
       ||||||||||||| |||||||||||| ||||||||||||  |||||| |
seq2  CAGCTTGTGCCTTTTAGTGAAAGTCTAATCATTAAATAAACCATATTTCT  99

seq1  TCATCAGAATAGACTTCAGAAAACTCTAAATCCCTCTTGTCACTCACATA  150
      |||||  |||| |||||| |||||||||||||||||||||||||||||||
seq2  TCATCTTAATAAACTTCAAAAAACTCTAAATCCCTCTTGTCACTCACATA  149

seq1  CTGAAACCATCCACTGTTGGAATTACTTGTGCTCTCTAAACATTTTTAAT  200
      |||||||||||||||| ||||||||||||||||||  || | ||||||||
seq2  CTGAAACCATCCACTGCTGGAATTACTTGTGCTCTGGAACCCTTTTTAAT  199

seq1  TAGGGAACTACAAAATAACTATGGTCACTAAAATGTGTTTGATCATTTGG  250
      ||||||||||||||  | |||||||||||||||||||||| ||| |||||
seq2  TAGGGAACTACAAACCAGCTATGGTCACTAAAATGTGTTTAATCTTTTGG  249

seq1  TCAAGTGCAGATATTGTTTGTGTAGATGATATAATACGTACATAGATGAA  300
      |||| |||| |||||||||||||||||||||| | ||    |||||||||
seq2  TCAAATGCAAATATTGTTTGTGTAGATGATATGAAACTGGAATAGATGAA  299

seq1  TACATATGGTGAATGTAGACTTCTAAAGGTTGAATGTGAGACTGACATAA  350
      | |||||||||||||||||||||||||||||||||| |||||||||||  
seq2  TTCATATGGTGAATGTAGACTTCTAAAGGTTGAATGAGAGACTGACATGT  349

seq1  CCTTTGCATATAAATGGGCAGTTTATAAG-CAGAATATGACTCATGTGGG  399
      |||||||||    |||||||||||||||| | ||||||||||  ||||||
seq2  CCTTTGCAT-GGCATGGGCAGTTTATAAGTCTGAATATGACTTGTGTGGG  398

seq1  ATCCTATGTCAAAGACGCTTGAACAAATCAATATCTAAGTGTCCTTGGCC  449
      |||||| ||||||||| || |||| |||||||||||   ||||||||| |
seq2  ATCCTAGGTCAAAGACACTGGAACCAATCAATATCTTGCTGTCCTTGGTC  448

seq1  TTCCTGGTTCTACTGCACCTCATTAGGATGTCATTGCCCTTTGCTCAGGC  499
       ||| ||| || ||||||||||||| ||||||||||| ||||||||||||
seq2  ATCCGGGTGCTGCTGCACCTCATTATGATGTCATTGCTCTTTGCTCAGGC  498

seq1  TGGGTTAGAAGAGTTGGTCCTGGCTGTAG--AAGTATGAGCTGCCTCTCA  547
      |||| || || | || ||||||  |||||  || ||| | |||| || ||
seq2  TGGGATATAATACTTTGTCCTG--TGTAGCCAATTATAAACTGCATCACA  546

seq1  CAGTGACGCTCTGAGCAGTAGCTTCAACTCTAGGTTCTCGGTGGAGATGT  597
      |   ||| | ||||| | ||||||||  |||||| || ||| ||||||||
seq2  CTACGACACACTGAGGATTAGCTTCAGGTCTAGGGTCGCGGGGGAGATGT  596

seq1  TCATAAGGTCCATGTCTATTCTTTGAATGTTGTTTTAGATACAGCTAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGTCCATGTCTATTCTTTGAATGTTGTTTTAGATACAGCTAGAA  646

seq1  ACGTGACCTGCAAAGCTAAGCACACATAAATTGCAATTGCTCCAACATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACCTGCAAAGCTAAGCACACATAAATTGCAATTGCTCCAACATGC  696

seq1  TCGACAAACAAATAAGGTGCTCCAGTCAAGCATGCCAGGTAATGGAATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAACAAATAAGGTGCTCCAGTCAAGCATGCCAGGTAATGGAATTC  746

seq1  TCTCTCTTTTCGAAGCCTATGACCAAACTCAGCATGTGACCATCCGATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTCGAAGCCTATGACCAAACTCAGCATGTGACCATCCGATAT  796

seq1  AAAGAGTAAGCTGGGTCAGCTCATAATTTAAATATTGATATTTTTAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAAGCTGGGTCAGCTCATAATTTAAATATTGATATTTTTAAATA  846

seq1  CATGTTCACTTCCTTTGCATTTAAATGAGAATTTTTTTTGGAAAAACTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCACTTCCTTTGCATTTAAATGAGAATTTTTTTTGGAAAAACTGA  896

seq1  ATACCTAGACTTTGTCATTATAATAATTTCTTTCCATTTTCCTAAGAGTC  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATACCTAGACTTTGTCATTAT-ATAATTTCTTTCCATTTTCCTAAGAGTC  945

seq1  ATCTTGTTTACTTTTGGATCCAAATTACTCACTTTGAGGATCACTGATCT  997
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATCTTGTTTACTTTTGGATCCAAATTACTCCACTTGAGGATCACTGATCT  995

seq1  AAAGAATAAAACAC--AAACTTGAA-CTTTTCCTGAAGGTCTTCT--ATC  1042
       || ||||||||||  ||||||||| |||||||||| | ||||||   ||
seq2  TAA-AATAAAACACCAAAACTTGAACCTTTTCCTGAGGTTCTTCTTATTC  1044

seq1  CCAATCCAGTTTG-ACCT-CATTTCTTTTT---CCCCCTCTTGTA-TTCT  1086
      ||||||||||||| |||| |||||||||||   ||| |||||||| ||||
seq2  CCAATCCAGTTTGAACCTCCATTTCTTTTTTCCCCCTCTCTTGTATTTCT  1094

seq1  TACAGATATTTTCAGTA-TCCACA-GTGAATCTGCTATATCAAGCAATCC  1134
      ||||||||||||||||| |||||| |||||||||||||||||  ||||||
seq2  TACAGATATTTTCAGTATTCCACAGGTGAATCTGCTATATCAGCCAATCC  1144

seq1  AATTG  1139
      |||||
seq2  AATTG  1149

seq1: chr13_81584101_81584510
seq2: B6Ng01-182E21.g_62_471 (reverse)

seq1  CTCCCTCCAATTACACACACACACACATGCACACACACATGCACACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCAATTACACACACACACACATGCACACACACATGCACACTTAT  50

seq1  ACCCACATATGTGCACATACACACACACACAAGGGATAACAGAAGGCAGC  100
      ||||||||||| |||||| |||||||||||||||||||||||||||||| 
seq2  ACCCACATATGCGCACATCCACACACACACAAGGGATAACAGAAGGCAGG  100

seq1  TGCACTGGTACCTGAATAACTACTGTGGCAGCAGTCTGTCCATCCAGCAT  150
      ||||| ||| ||||||||| |   | ||||||||| ||||||||||||||
seq2  TGCACCGGTCCCTGAATAAGTGGCGCGGCAGCAGTTTGTCCATCCAGCAT  150

seq1  CGTCAGTTGTCCTGATGTCTCCACAAACTCCCCCCTGGAAGGAGGCAATA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTAGTCCTGATGTCTCCACAAACTCCCCCCTGGAAGGAGGCAATA  200

seq1  TCTTCCAGTTCACTGTGATCTCCCCTGAAACCCCTGGGCCACGAACAAGG  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTCCAGTTCACTGTGATGTCCCCTGAAACCCCTGGGCCACGAACAAGG  250

seq1  CTACAAAAGTACATGGACATGTATTCAGTATATTTTTAATTAATCATCTT  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTACAAAAGTACATGGACATGTATTCAGTAAATTTTTAATTAATCATCTT  300

seq1  TTTCTAATAATTTACTGTGCCTTTAAGCCAATTTTCACTTATTTCAAGGA  350
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCGAATAATTTTCTGTGCCTTTAAGCCAATTTTCACTTATTTCAAGGA  350

seq1  TATTACGACTTTAAATAGCCTTACCCATCAATTGTAAATCAAGCAGAAAT  400
      || |  |||  ||||||||||| ||| |||||||||||||||||||||||
seq2  TACTCGGACGATAAATAGCCTTCCCCCTCAATTGTAAATCAAGCAGAAAT  400

seq1  CTTAGAATTC  410
         |||||||
seq2  AGGAGAATTC  410