BAC Information

Click to search

BAC

Clone NameB6Ng01-186C21
Chromosome13 (Build37)
Map Location 11,751,779 - 11,895,159
singlet/doubletdoublet
Overlap geneRyr2
Upstream geneLOC100039648, Zp4
Downstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186C21.bB6Ng01-186C21.g
ACCGA011093GA011094
length269895
definitionB6Ng01-186C21.b B6Ng01-186C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,894,891 - 11,895,159)(11,751,779 - 11,752,662)
sequence
cactcgagacataagagcttttctatgggattttaaaagcttcttcccag
ttctgtgctgtccttacacacagagaaacagacagacagacagacagaca
gcactctgcatgccatggctacaaacaattggcaccatcattattggcag
agatgagtaacaatgggtgaatagtttatgtattattgttgaaattacat
ttgattgtgtttatgtgtatacatgtgtgcacgtgtgtgtgtgtgtgtgt
atgtgtgtgtgtgtgtgtg
gaattcataggtttcacagtatggctagaacattaaaaaacttgtaaaca
ttgtaactgtccaacagcttttcaatagaagaaattaaaaataaaagagt
ttaagttttattttgaaaaatatctgttttttaattcacacccacatttt
ttatatatgatgtatatgttttgtatgtgtacacatattatttatatagt
atatatttgtacatatatatgtatgcctatacatatatatgtatatatat
atatatatatatatatatatatatatatatatatatgtatatatatatat
gcatatatatatatatatacatatatgtatactcgagtatatatatatat
acataaacaaaaaaagaataaatatgttacttggagagcatatagggctt
cagcaaacaacatccagttgtaagctgaagatgcccaatgagaatcaatg
aatgcattaatattttgttatgttataaccatgagaaagctcatggctca
cgagtcagagaactatgtggtctttatgaggagatgagcccagcagatct
tgaaggacttaggggagtgagccgcttctgcacagtgtacctgttatagt
ccacaaatcgagatcaggagtgggttgaaggcatagagatccctgggcca
gtgtggtgaactcatctagaatgagcagctcggcctcagacatgtcccct
ctggcttcggcttttcaggtggtcttccctcagacactaccatagcagcc
tttttctttagcttctccatcaaagggtaagaaatgagttttcaagagct
tgaggtttcacctttgttgatgacaggctggtgaaaacactggaaacaga
acattaatcattatttactgttgaattaatttaatttgtccatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11894891_11895159
seq2: B6Ng01-186C21.b_46_314 (reverse)

seq1  CACACACACACACACACATACACACACACACACACACGTGCACACATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATACACACACACACACACACGTGCACACATGTA  50

seq1  TACACATAAACACAATCAAATGTAATTTCAACAATAATACATAAACTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAACACAATCAAATGTAATTTCAACAATAATACATAAACTATT  100

seq1  CACCCATTGTTACTCATCTCTGCCAATAATGATGGTGCCAATTGTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTGTTACTCATCTCTGCCAATAATGATGGTGCCAATTGTTTGTA  150

seq1  GCCATGGCATGCAGAGTGCTGTCTGTCTGTCTGTCTGTCTGTTTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCATGCAGAGTGCTGTCTGTCTGTCTGTCTGTCTGTTTCTCTGT  200

seq1  GTGTAAGGACAGCACAGAACTGGGAAGAAGCTTTTAAAATCCCATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGACAGCACAGAACTGGGAAGAAGCTTTTAAAATCCCATAGAAA  250

seq1  AGCTCTTATGTCTCGAGTG  269
      |||||||||||||||||||
seq2  AGCTCTTATGTCTCGAGTG  269

seq1: chr13_11751779_11752662
seq2: B6Ng01-186C21.g_61_955

seq1  GAATTCATAGGTTTCACAGTATGGCTAGAACATTAAAAAACTTGTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTTTCACAGTATGGCTAGAACATTAAAAAACTTGTAAACA  50

seq1  TTGTAACTGTCCAACAGCTTTTCAATAGAAGAAATTAAAAATAAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTGTCCAACAGCTTTTCAATAGAAGAAATTAAAAATAAAAGAGT  100

seq1  TTAAGTTTTATTTTGAAAAATATCTGTTTTTTAATTCACACCCACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTATTTTGAAAAATATCTGTTTTTTAATTCACACCCACATTTT  150

seq1  TTATATATGATGTATATGTTTTGTATGTGTACACATATTATTTATATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGATGTATATGTTTTGTATGTGTACACATATTATTTATATAGT  200

seq1  ATATATTTGTACATATATATGTATGCCTATACATATATATGTATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGTACATATATATGTATGCCTATACATATATATGTATATATAT  250

seq1  ATATATATATATATATATATATATATATATATATATGACACAATTTAAAT  300
      |||||||||||||||||||||||||||||||||||||     || || ||
seq2  ATATATATATATATATATATATATATATATATATATGTATATATATATAT  300

seq1  GCATTTCTTTCTGTAT-TATCTGGAGAGTATACTCTAGTCT-CCTGTAGA  348
      |||| | | | | ||| ||  |  |  |||||||| ||| |   | || |
seq2  GCATATATATATATATATACATATA-TGTATACTCGAGTATATATATATA  349

seq1  CACTGGAACAATATAAGAATAGATATGTTACTTGCAAAGCATAGAGGGCT  398
       ||   ||||| | ||||||| |||||||||||| | |||||| ||||||
seq2  TACATAAACAAAAAAAGAATAAATATGTTACTTGGAGAGCATATAGGGCT  399

seq1  TCAGCAAACAACATCCAGTTGTAAGCTGAAGATGCCCAATGAGAATCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACAACATCCAGTTGTAAGCTGAAGATGCCCAATGAGAATCAAT  449

seq1  GAATGCATTAATATTTTGTTATGTTATAACCATGAGAAAGCTCATGGCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATTAATATTTTGTTATGTTATAACCATGAGAAAGCTCATGGCTC  499

seq1  ACGAGTCAGAGAACTATGTGGTCTTTATGAGGAGATGAGCCCAGCAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCAGAGAACTATGTGGTCTTTATGAGGAGATGAGCCCAGCAGATC  549

seq1  TTGAAGGACTTAGGGGAGTGAGCCGCTTCTGCACAGTGTACCTGTTATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACTTAGGGGAGTGAGCCGCTTCTGCACAGTGTACCTGTTATAG  599

seq1  TCCACAAATCG-GATCAGGAGTGGGTAGAAGGCATAGAGATCCCT-GGCC  646
      ||||||||||| |||||||||||||| |||||||||||||||||| ||||
seq2  TCCACAAATCGAGATCAGGAGTGGGTTGAAGGCATAGAGATCCCTGGGCC  649

seq1  AGTGTGGTGAACTCATCTAGAATGAGCAGCTCGGCCTCAGACATGTCCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTGAACTCATCTAGAATGAGCAGCTCGGCCTCAGACATGTCCCC  699

seq1  TCTGGCTTCGGC-TTTCAGGTGGTCTT-CCTCAGACACTACCATAGCAGC  744
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TCTGGCTTCGGCTTTTCAGGTGGTCTTCCCTCAGACACTACCATAGCAGC  749

seq1  CTTTTTCTTTAGCTTCTCCATC-AAGGGTAAGAAATGAGTTTTCAAGAGC  793
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTTTCTTTAGCTTCTCCATCAAAGGGTAAGAAATGAGTTTTCAAGAGC  799

seq1  -TGAGGTTTCA-CTTTGTTGATGATAGGCT-GTGAAAACACTGGAAACAG  840
       |||||||||| |||||||||||| ||||| |||||||||||||||||||
seq2  TTGAGGTTTCACCTTTGTTGATGACAGGCTGGTGAAAACACTGGAAACAG  849

seq1  -ACATTAATTAATA-TTAATGCTGAATTAATTTAATTTGTCCATTA  884
       |||||||| | || ||| || ||||||||||||||||||||||||
seq2  AACATTAATCATTATTTACTGTTGAATTAATTTAATTTGTCCATTA  895