BAC Information

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BAC

Clone NameB6Ng01-186F17
Chromosome13 (Build37)15 (Build37)
Map Location 17,553,170 - 17,553,68648,975,538 - 48,976,135
singlet/doubletsingletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186F17.bB6Ng01-186F17.g
ACCGA011223GA011224
length967596
definitionB6Ng01-186F17.b B6Ng01-186F17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,553,170 - 17,553,686)(48,975,538 - 48,976,135)
sequence
gaattccagcctaggatactatacccagccaaacaagacacaacattttg
ctgcctacaggaaactcatctcagggaacaagacagacactacctcagag
taaaaggctggaaaacaattttccaagcaaatgctgtgaagaaacaagct
ggagtagccattctaatatctaacaaaatagacttccaacccaaagtaat
caaaaaagacaaggaggggcacttcatactcatcaaaggtaaaatctccc
aagaggaactctcaattctgaatatctatgctccaaatgcaagggcagcc
acattcattaaagaaactttagttaagctcaaagcacacattgcacctca
cacaataatagtgggagatttcaacacaccactttcaccaatggacagat
catggaaacagaaactaaaaagggacacagtgaaactaatagaagtattg
aaacaaatggacttaacagatatctacagaacattttatcctaaaacaaa
aggatataacttcttctcagcacctctgggtaccttctccaaaattgacc
atataattggtcacaaaacaagcctcaacatatacaaaaatattgaaatt
gtcccatgcatcctatcagatcaccatggtataaggctgatcttcaataa
caaaataaataatagaaagccaacattcacgtggaaactgaacaacactc
ttctcaatgataccttggtcaaggaaagaataaagaaagaaattaaagac
tttttagagttcaatgaaaatgaagccacaacatacacaaacttatggga
cacaatgaaagcatttctaagagggaaactcatagctctgagtgcctcca
agaagaaactagagagagcatacattagcaggttgacaacacacctaaaa
ggtctagaacaaaaggaagcaaattcacccaagaggagtagatggcagga
ataatcaaactcagcgg

gaattcattacatagggaagagacaacaggagaaacccagacaatataag
caattttcctcagaactgatccagttcctgagactccaccaaggaggacc
ttaatccttaaggatctattctctccttaaatgtcccaccacatctcagt
actattatgttggacactaaatttctgcatgacgagagagagagagagag
agagagagagagagagagagagagagagagagagagaccgtgaaaatacc
actcaaggtccatgtgtctgtagttttactatacaaggattggcaaatat
tgaactgatctataatatcttaaataatatgtacaaatcttttggcatat
gtaaagtgttttgaaggtactttatttccgttagtaatatataatacgaa
gtttgaatatatattcacattttcttctctttatcgatgattcttttctc
ttgcaagacaaaatagttacaaagagagtggatatatagatcgacccata
attgatagagagacagacagacagattgatgatagataaattacttatga
tagataggtagatagatgatagatagatagatagatagatagatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17553170_17553686
seq2: B6Ng01-186F17.b_53_257

seq1  AGGATACTATACCCAGCCAAACTTTCAATAACCTTAGATGGAGAAACAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTATTCCACGACAGAACCAAATTCACACAATATCTTTCCATGAATCCAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTTCAAAAAATAATAACAGAAAAAAACAACACAAGGATGGAAACCACG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTAGAAAAAGCAAGAAGGTAATCCCTCAACAAACCTAAAATAAGACAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCACAAGAACAGAATGCCAACTTTAACAACAAAAATAATAGGAAGCAACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTACTTTTTCTTAATATCTCTTAATATAAATGGACTCAACTCCCCAATA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAGACATAGACTAATAGACAGGCTACACAAACAGGACCCAACATTTTG  350
               ||  || || ||   | |  |||||| ||| ||||||||||
seq2  ---------AGGATACTATAC---CCAGCCAAACAAGACACAACATTTTG  38

seq1  CTGCTTACAGGAAACCAATCTCAGGGAAAAAGATAGACACTACCTCGAAA  400
      |||| ||||||||||  ||||||||||| |||| ||||||||||||  | 
seq2  CTGCCTACAGGAAACTCATCTCAGGGAACAAGACAGACACTACCTCAGAG  88

seq1  TAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCT  450
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  TAAAAGGCTGGAAAACAATTTTCCAAGCAAATGCTGTGAAGAAACAAGCT  138

seq1  GGAGTAGCCATTCTAATAGCTAATAAAATAGACTTCCAACCCAAGGTCAT  500
      |||||||||||||||||| |||| |||||||||||||||||||| || ||
seq2  GGAGTAGCCATTCTAATATCTAACAAAATAGACTTCCAACCCAAAGTAAT  188

seq1  CAAAAAAGACAAGGAGG  517
      |||||||||||||||||
seq2  CAAAAAAGACAAGGAGG  205


seq1: chr15_48975538_48976135
seq2: B6Ng01-186F17.g_65_660

seq1  GAATTCATTACATAGGGAAGAGACAACAGGAGAAACCCAGACAATATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATAGGGAAGAGACAACAGGAGAAACCCAGACAATATAAG  50

seq1  CAATTTTCCTCAGAACTGATCCAGTTCCTGAGACTCCACCAAGGAGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCTCAGAACTGATCCAGTTCCTGAGACTCCACCAAGGAGGACC  100

seq1  TTAATCCTTAAGGATCTATTCTCTCCTTAAATGTCCCACCACATCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTTAAGGATCTATTCTCTCCTTAAATGTCCCACCACATCTCAGT  150

seq1  ACTATTATGTTGGACACTAAATTTCTGCATGACGAGAGAGAGAGAGAGAG  200
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  ACTATTATGTTGGACACTAAATTTCTGCATGAC--GAGAGAGAGAGAGAG  198

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTGAAAATA  248

seq1  CCACTCAAGGTCCATGTGTCTGTAGTTTTACTATACAAGGATTGGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAAGGTCCATGTGTCTGTAGTTTTACTATACAAGGATTGGCAAAT  298

seq1  ATTGAACTGATCTATAATATCTTAAATAATATGTACAAATCTTTTGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTGATCTATAATATCTTAAATAATATGTACAAATCTTTTGGCAT  348

seq1  ATGTAAAGTGTTTTGAAGGTACTTTATTTCCGTTAGTAATATATAATACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGTGTTTTGAAGGTACTTTATTTCCGTTAGTAATATATAATACG  398

seq1  AAGTTTGAATATATATTCACATTTTCTTCTCTTTATCGATGATTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAATATATATTCACATTTTCTTCTCTTTATCGATGATTCTTTTC  448

seq1  TCTTGCAAGACAAAATAGTTACAAAGAGAGTGGATATATAGATCGACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAGACAAAATAGTTACAAAGAGAGTGGATATATAGATCGACCCA  498

seq1  TAATTGATAGAGAGACAGACAGACAGATTGATGATAGATAAATTACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAGAGAGACAGACAGACAGATTGATGATAGATAAATTACTTAT  548

seq1  GATAGATAGGTAGATAGATGATAGATAGATAGATAGATAGATAGATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGGTAGATAGATGATAGATAGATAGATAGATAGATAGATAG  596


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