BAC Information

Click to search

BAC

Clone NameB6Ng01-187E07
Chromosome13 (Build37)
Map Location 37,104,717 - 37,105,795
singlet/doubletsinglet
Overlap geneF13a1
Upstream geneLyrm4, Fars2, LOC100041590, LOC666758, Nrn1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187E07.bB6Ng01-187E07.g
ACCGA011889GA011890
length1,0971,078
definitionB6Ng01-187E07.b B6Ng01-187E07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtattagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggtttatcta
tcttgttaattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggtttatttcaccccttgagtttgatta
ttttcctgccgtctactcctcttgggtgaatttgcttcctttttttctag
agcttttagatgtgttgtcaagctgctagtatgttgctctctcccgtttc
ttcttggaggtactcagagctatgagttttccctcttagaatgctttcat
tgtgtcccaaagttgggtacgttggtgccttccattttcatttaacctca
taaaggcctttaatttctttctttaattccttcccttgaccaaggtt
gaattcataagcgtggctcattcgtacccacagaattgaaactgtacttg
gttaggaagttgtaatctgaactgaggtgtgatgtggtgcaggcaccact
ggatgttccctataattctaaagcatcttgccaatatgaagtgagggctg
agaaaagtgggaaaagatacctaatgaaaactaatgttccaaccatcaca
ccttggtcttatggctcccatctgaaaggaggcgtcatgtaagtggatag
aaaactcactaaagcaaggcactaagtggactaattattcatcacccttg
ccctctggttcctccctgagtgtgctgcaaggattgatggaggataacct
gaagctctttcaaccgcttagtgatagttgcttgctaataagatgaccca
attaccagccttattctgagcattgcaagttcataggcagctgcatctcc
atggtgtttcttacaggaggacaacccacataaagtgccactatagcagc
agccagactgcctgctcgagatgagctataaatagctgggcatgtctttg
gctagcttcacctctcaggatatcagccccctttcttgtctttcctcctc
tttctgtaatgggtcactttccatctctgactccccactctttcctgtcc
tcactctcatgcgcatagacatgtgtgccaggcataaatggttatgaatt
tttctactgaatgagggaggaatgagtcgctgcttgatgatgggttgaac
tagcctatctgtttaaaaggatttctttagccttccaggcatccaggatc
agggctctggacctgcttccctgactaaggctaaacattctcttggccac
tgctctttatttaccatcctaaaggttaaacacagggctttgtgtagacc
agacaagcactcttctgggagttccatccccagcccttgattggctcttt
gaaagtttcttagctaaactacaggagaagcttgtggtgttcctccagtc
tcacaatttacttctgtctactgctatttaccagccttcataagatcaca
gctaatggcattgttcaggtgaatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37104717_37105795
seq2: B6Ng01-187E07.g_67_1144 (reverse)

seq1  CACCAATTCA-CTGAACAATG-CATTAGCTGTGATCTTATGAAGGCTGGT  48
      |||| ||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CACC-ATTCACCTGAACAATGCCATTAGCTGTGATCTTATGAAGGCTGGT  49

seq1  AAATAGCAGTAGACAGAAAGTAAATTGTGAGACTGGAGGAACCACCACAA  98
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  AAATAGCAGTAGACAG-AAGTAAATTGTGAGACTGGAGGAA-CACCACAA  97

seq1  GC-TCTCCTGTAGTTTAGCTAAGAAACTTTCAAAGAGCCAATCAAGGGCT  147
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTGTAGTTTAGCTAAGAAACTTTCAAAGAGCCAATCAAGGGCT  147

seq1  GGGGATGGAACTCCCAGAAGAGTGCTTGTCTGGTCTACACAAAGCCCTGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGAACTCCCAGAAGAGTGCTTGTCTGGTCTACACAAAGCCCTGT  197

seq1  GTTTAACCTTTAGGATGGTAAATAAAAGAGCAGTGGCCAAGAGAATGTTT  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTAACCTTTAGGATGGTAAAT-AAAGAGCAGTGGCCAAGAGAATGTTT  246

seq1  AGCCTTAGTCAGGGAAGCAGGTCCAGAGCCCTGATCCTGGATGCCTGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGTCAGGGAAGCAGGTCCAGAGCCCTGATCCTGGATGCCTGGAA  296

seq1  GGCTAAAGAAATCCTTTTAAACAGATAGGCTAGTTCAACCCATCATCAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGAAATCCTTTTAAACAGATAGGCTAGTTCAACCCATCATCAAG  346

seq1  CAGCGACTCATTCCTCCCTCATTCAGTAGAAAAATTCATAACCATTTATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACTCATTCCTCCCTCATTCAGTAGAAAAATTCATAACCATTTATG  396

seq1  CCTGGCACACATGTCTATGCGCATGAGAGTGAGGACAGGAAAGAGTGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACACATGTCTATGCGCATGAGAGTGAGGACAGGAAAGAGTGGGG  446

seq1  AGTCAGAGATGGAAAGTGACCCATTACAGAAAGAGGAGGAAAGACAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGATGGAAAGTGACCCATTACAGAAAGAGGAGGAAAGACAAGAA  496

seq1  AGGGGGCTGATATCCTGAGAGGTGAAGCTAGCCAAAGACATGCCCAGCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTGATATCCTGAGAGGTGAAGCTAGCCAAAGACATGCCCAGCTA  546

seq1  TTTATAGCTCATCTCGAGCAGGCAGTCTGGCTGCTGCTATAGTGGCACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTCATCTCGAGCAGGCAGTCTGGCTGCTGCTATAGTGGCACTT  596

seq1  TATGTGGGTTGTCCTCCTGTAAGAAACACCATGGAGATGCAGCTGCCTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGTTGTCCTCCTGTAAGAAACACCATGGAGATGCAGCTGCCTAT  646

seq1  GAACTTGCAATGCTCAGAATAAGGCTGGTAATTGGGTCATCTTATTAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCAATGCTCAGAATAAGGCTGGTAATTGGGTCATCTTATTAGCA  696

seq1  AGCAACTATCACTAAGCGGTTGAAAGAGCTTCAGGTTATCCTCCATCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTATCACTAAGCGGTTGAAAGAGCTTCAGGTTATCCTCCATCAAT  746

seq1  CCTTGCAGCACACTCAGGGAGGAACCAGAGGGCAAGGGTGATGAATAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGCACACTCAGGGAGGAACCAGAGGGCAAGGGTGATGAATAATT  796

seq1  AGTCCACTTAGTGCCTTGCTTTAGTGAGTTTTCTATCCACTTACATGACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTTAGTGCCTTGCTTTAGTGAGTTTTCTATCCACTTACATGACG  846

seq1  CCTCCTTTCAGATGGGAGCCATAAGACCAAGGTGTGATGGTTGGAACATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCAGATGGGAGCCATAAGACCAAGGTGTGATGGTTGGAACATT  896

seq1  AGTTTTCATTAGGTATCTTTTCCCACTTTTCTCAGCCCTCACTTCATATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATTAGGTATCTTTTCCCACTTTTCTCAGCCCTCACTTCATATT  946

seq1  GGCAAGATGCTTTAGAATTATAGGGAACATCCAGTGGTGCCTGCACCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATGCTTTAGAATTATAGGGAACATCCAGTGGTGCCTGCACCACA  996

seq1  TCACACCTCAGTTCAGATTACAACTTCCTAACCAAGTACAGTTTCAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTCAGTTCAGATTACAACTTCCTAACCAAGTACAGTTTCAATTC  1046

seq1  TGTGGGTACGAATGAGCCACGCTTATGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  TGTGGGTACGAATGAGCCACGCTTATGAATTC  1078