BAC Information

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BAC

Clone NameB6Ng01-187O10
Chromosome13 (Build37)
Map Location 23,538,524 - 23,698,705
singlet/doubletdoublet
Overlap geneBtn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be
Upstream geneLOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1
Downstream geneHist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O10.bB6Ng01-187O10.g
ACCGA012350GA012351
length1,2001,094
definitionB6Ng01-187O10.b B6Ng01-187O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,697,525 - 23,698,705)(23,538,524 - 23,539,615)
sequence
gaattcacacacaccaaggccctgagtcctgcaatactgctgacccagtc
attttgatgacagctagagtgacatggaacacgggacaaacaagccattt
gccatatgctcatggagttttcttcctgtaaagtgaagtacaaagtacta
ttataacatagaatgtgcagggcccacatgaaggtgacaggttagtggaa
gctgtcaccatcacagtattaggggtcccctctccatgtgggttgcaggt
gcatctactgtaggtctgttgtgttaaataaatcctggggccagactttt
ctggtgtggtttagtattcccgtgtacttatgtgtgcccagcctactgtg
ctaggtttatggataaaggctgttgactcttgggagtaagctgattctta
gtcctgattctgattcctcctgggtgctgctggacagatggtactgttcg
tttctttacaaacccaataagatgcagtcatccggtctctgtattttcac
tctaactggaatcgcccagcacaaagcatggcccaaaagcccctctttta
cacaaaacacaaaaccagacactgtctgacaggaacaagagcccatatca
gttaggcacaggagatatggcaaaattttttttacattcataaaagtgtt
ataattccttgtaaaataaaagggaacaggatagagagatgactcagagg
tcaaaagcaactattgctcttacaaaggacctaggttctgtctccagaac
ctacatagttggtaccagctctctgtacctccacttgcagaggatctgac
atcgtgttctggcctttgtaagcagcagacacatacaaggtacatgtaca
tacatataagcaaaatatccatgagtgtgaaatgaaaaattaatttaaaa
ataagagaaaatttaaaattgaggtcaaagaaaatattctaatagctgta
ctcatcttcctttaatttctgataccactatattttttatagatgaaggg
acacacaaaggcagaaggtgcataggatccacagtacataatgtaggcgg
tggaggtggcggcacaagcagaacaacatttccaggatcctctttttttg
ctttgtcaattttcagtatccaataagagagtaaagcgccagccgaggct
gtgctggatcaagccgagattagctcggagatcttggttgtaatcattac

acagactggttacagaatgaaaaagtctcaaaacacaacgacagtaagag
tgatctttttgttccagacaaactcagacatgaatggattttcttcattg
aatttccaggaagtcaaacaaaaagacctgtacattccgagccagccagg
agtcgaacctggaatcttctgatccgtagtcagacgcgttatccattgcg
ccactggccctgtacacgtaagcccttgggtggggcaactacttacatta
tttcgaggcttaaaattgtactgccctcctggcttaggtttggtttagga
taatagattttagatattcttttatttctattccttttaggtttgttttt
gatcctctccccccctcaaaaacaaaacaaaacaaacaaacaaacaaaca
aacaaaaaaacggtggtaagagatgtccctatgtcacctttctattcacg
ctctcattcattcaaccaatattgatgaatgctcaaggaataaaatagta
aagaaaacagagttccccgtgccctctagaaaataatatggtagttctga
tacaaacactaaaactctaaataacactttgatggatttagaagaaaaat
aatgctaaaaggaaaggaaagaggaacatggtcatggcatcctttgatat
tttttattgtctccctgtaggttgtttaacctccgaccccaaatatttcc
caaacaagattgcaacaggaggtctcactgtgtgtctctgcatgttgcct
ttatgagaatatgtcaattctggtacttatttggttactttctaggcaaa
gatggttttcatatgtgtgtttcagtcttttctatgtttttgaaaaggca
tctctattctcgtgcactgtaaataaatcaagggctgttgaacagaattt
aattgcttgatttaagactgtacatgatgagattagaaagctagtttttg
gtgcatatagtttcaaacaacccttaatgtgcatgcacgggtgtctgttt
ttttacatctaagctttatggagcctacttacacttcttcctcaaaaata
gggctcctttgtcatcagaattttgtaaccagactcagaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23697525_23698705
seq2: B6Ng01-187O10.b_45_1244 (reverse)

seq1  GTAATGATTACAA-CAAGGACTCCGAGCTAATC-CGGCTGGAT-CAGCAC  47
      ||||||||||||| ||||  ||||||||||||| ||||| ||| ||||||
seq2  GTAATGATTACAACCAAGATCTCCGAGCTAATCTCGGCTTGATCCAGCAC  50

seq1  --GCTC-GCTGGCGC-TTACTCTC-TATTGGATACTGGAAAATGAACAAG  92
         ||| |||||||| |||||||| |||||||||||| ||| |||  |||
seq2  AGCCTCGGCTGGCGCTTTACTCTCTTATTGGATACTGAAAATTGACAAAG  100

seq1  C-AAAAAAGAGGAT-CTGG-AATGTTG-TCTGC-TGTG-CGC--ACTC--  132
      | |||||||||||| |||| ||||||| ||||| |||| |||   |||  
seq2  CAAAAAAAGAGGATCCTGGAAATGTTGTTCTGCTTGTGCCGCCACCTCCA  150

seq1  ACGCCTACATTATGTACTGTGGATCCTATGCA-CTTCTGCCTTTGTGTGT  181
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCGCCTACATTATGTACTGTGGATCCTATGCACCTTCTGCCTTTGTGTGT  200

seq1  CCCTTCATCTATTAAAAATAATAGTGGTATCAG-AATTAAAGGAAGATGA  230
      |||||||||||| |||||| ||||||||||||| ||||||||||||||||
seq2  CCCTTCATCTATAAAAAAT-ATAGTGGTATCAGAAATTAAAGGAAGATGA  249

seq1  GTACAGCTATTAGAATATTTTCTTTGACCTCAATTTTAAATTTTCTCTTA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTATTAGAATATTTTCTTTGACCTCAATTTTAAATTTTCTCTTA  299

seq1  TTTTTAAATTAATTTTTCATTTCACACTCATGGATATTTTGCTTATATGT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTAATTTTTCATTTCACACTCATGGATATTTTGCTTATATGT  349

seq1  ATGTACATGTACCTTGTATGTGTCTGCTGCTTACAAAGGCCAGAACACGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGTACCTTGTATGTGTCTGCTGCTTACAAAGGCCAGAACACGA  399

seq1  TGTCAGATCCTCTGCAAGTGGAGGTACAGAGAGCTGGTACCAACTATGTA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATCCTCTGCAAGTGGAGGTACAGAGAGCTGGTACCAACTATGTA  449

seq1  GGTTCTGGAGACAGAACCTAGGTCCTTTGTAAGAGCAATAGTTGCTTTTG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGAGACAGAACCTAGGTCCTTTGTAAGAGCAATAGTTGCTTTTG  499

seq1  ACCTCTGAGTCATCTCTCTATCCTGTTCCCTTTTATTTTACAAGGAATTA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGTCATCTCTCTATCCTGTTCCCTTTTATTTTACAAGGAATTA  549

seq1  TAACACTTTTATGAATGTAAAAAAAATTTTGCCATATCTCCTGTGCCTAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTTATGAATGTAAAAAAAATTTTGCCATATCTCCTGTGCCTAA  599

seq1  CTGATATGGGCTCTTGTTCCTGTCAGACAGTGTCTGGTTTTGTGTTTTGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGGGCTCTTGTTCCTGTCAGACAGTGTCTGGTTTTGTGTTTTGT  649

seq1  GTAAAAGAGGGGCTTTTGGGCCATGCTTTGTGCTGGGCGATTCCAGTTAG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAGGGGCTTTTGGGCCATGCTTTGTGCTGGGCGATTCCAGTTAG  699

seq1  AGTGAAAATACAGAGACCGGATGACTGCATCTTATTGGGTTTGTAAAGAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATACAGAGACCGGATGACTGCATCTTATTGGGTTTGTAAAGAA  749

seq1  ACGAACAGTACCATCTGTCCAGCAGCACCCAGGAGGAATCAGAATCAGGA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACAGTACCATCTGTCCAGCAGCACCCAGGAGGAATCAGAATCAGGA  799

seq1  CTAAGAATCAGCTTACTCCCAAGAGTCAACAGCCTTTATCCATAAACCTA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATCAGCTTACTCCCAAGAGTCAACAGCCTTTATCCATAAACCTA  849

seq1  GCACAGTAGGCTGGGCACACATAAGTACACGGGAATACTAAACCACACCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAGGCTGGGCACACATAAGTACACGGGAATACTAAACCACACCA  899

seq1  GAAAAGTCTGGCCCCAGGATTTATTTAACACAACAGACCTACAGTAGATG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTGGCCCCAGGATTTATTTAACACAACAGACCTACAGTAGATG  949

seq1  CACCTGCAACCCACATGGAGAGGGGACCCCTAATACTGTGATGGTGACAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCAACCCACATGGAGAGGGGACCCCTAATACTGTGATGGTGACAG  999

seq1  CTTCCACTAACCTGTCACCTTCATGTGGGCCCTGCACATTCTATGTTATA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAACCTGTCACCTTCATGTGGGCCCTGCACATTCTATGTTATA  1049

seq1  ATAGTACTTTGTACTTCACTTTACAGGAAGAAAACTCCATGAGCATATGG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTTTGTACTTCACTTTACAGGAAGAAAACTCCATGAGCATATGG  1099

seq1  CAAATGGCTTGTTTGTCCCGTGTTCCATGTCACTCTAGCTGTCATCAAAA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTTGTTTGTCCCGTGTTCCATGTCACTCTAGCTGTCATCAAAA  1149

seq1  TGACTGGGTCAGCAGTATTGCAGGACTCAGGGCCTTGGTGTGTGTGAATT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTCAGCAGTATTGCAGGACTCAGGGCCTTGGTGTGTGTGAATT  1199

seq1  C  1181
      |
seq2  C  1200

seq1: chr13_23538524_23539615
seq2: B6Ng01-187O10.g_72_1165

seq1  ACAGACTGGTTACAGAATGAAAAAGTCTCAAAACACAACGACAGTAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGGTTACAGAATGAAAAAGTCTCAAAACACAACGACAGTAAGAG  50

seq1  TGATCTTTTTGTTCCAGACAAACTCAGACATGAATGGATTTTCTTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTTGTTCCAGACAAACTCAGACATGAATGGATTTTCTTCATTG  100

seq1  AATTTCCAGGAAGTCAAACAAAAAGACCTGTACATTCCGAGCCAGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGGAAGTCAAACAAAAAGACCTGTACATTCCGAGCCAGCCAGG  150

seq1  AGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCG  200

seq1  CCACTGGCCCTGTACACGTAAGCCCTTGGGTGGGGCAACTACTTACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCCTGTACACGTAAGCCCTTGGGTGGGGCAACTACTTACATTA  250

seq1  TTTCGAGGCTTAAAATTGTACTGCCCTCCTGGCTTAGGTTTGGTTTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGGCTTAAAATTGTACTGCCCTCCTGGCTTAGGTTTGGTTTAGGA  300

seq1  TAATAGATTTTAGATATTCTTTTATTTCTATTCCTTTTAGGTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTTTAGATATTCTTTTATTTCTATTCCTTTTAGGTTTGTTTTT  350

seq1  GATCCTCTCCCCCCCTCAAAAACAAAACAAAACAAACAAACAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCCCCCCCTCAAAAACAAAACAAAACAAACAAACAAACAAACA  400

seq1  AACAAAAAAACGGTGGTAAGAGATGTCCCTATGTCACCTTTCTATTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACGGTGGTAAGAGATGTCCCTATGTCACCTTTCTATTCACG  450

seq1  CTCTCATTCATTCAACCAATATTGATGAATGCTCAAGGAATAAAATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTCATTCAACCAATATTGATGAATGCTCAAGGAATAAAATAGTA  500

seq1  AAGAAAACAGAGTTCCCCGTGCCCTCTAGAAAATAATATGGTAGTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGAGTTCCCCGTGCCCTCTAGAAAATAATATGGTAGTTCTGA  550

seq1  TACAAACACTAAAACTCTAAATAACACTTTGATGGATTTAGAAGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACTAAAACTCTAAATAACACTTTGATGGATTTAGAAGAAAAAT  600

seq1  AATGCTAAAAGGAAAGGAAAGAGGAACATGGTCATGGCATCCTTTGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAAAGGAAAGGAAAGAGGAACATGGTCATGGCATCCTTTGATAT  650

seq1  TTTTTATTGTCTCCCTGTAGGTTGTTTAACCTCCGACCCCAAATATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGTCTCCCTGTAGGTTGTTTAACCTCCGACCCCAAATATTTCC  700

seq1  CAAACAAGATTGCAACAGGAGGTCTCACTGTGTGTCTCTGCATGTTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGATTGCAACAGGAGGTCTCACTGTGTGTCTCTGCATGTTGCCT  750

seq1  TTATGAGAATATGTCAATTCTGGTACTTATTTGGTTACTTTCTAGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAATATGTCAATTCTGGTACTTATTTGGTTACTTTCTAGGCAAA  800

seq1  GATGGTTTTCATATGTGTGTTTCAGTC-TTTCTATGTTTTTGAAAAGGCA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATGGTTTTCATATGTGTGTTTCAGTCTTTTCTATGTTTTTGAAAAGGCA  850

seq1  TCTCTATTCTCGTGCACTGTAAATAAATCAAGGGCTGTTGAACAGAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCTCGTGCACTGTAAATAAATCAAGGGCTGTTGAACAGAATTT  900

seq1  AATTGCTTGATTTAAGACTGTACATGATGAGATTAGAAAGCTAG-TTTTG  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTGCTTGATTTAAGACTGTACATGATGAGATTAGAAAGCTAGTTTTTG  950

seq1  GTGCATATAGTTTC-AACAACCCTTAATGTGCATGCACGGGTGTCTGTTT  997
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGCATATAGTTTCAAACAACCCTTAATGTGCATGCACGGGTGTCTGTTT  1000

seq1  TTTTACATCTAAGCTTTAATGGAAGCCTACTTAACACTTCCTCCTCAAAA  1047
      ||||||||||||||||| |||| ||||||||| ||||||| |||||||||
seq2  TTTTACATCTAAGCTTT-ATGG-AGCCTACTT-ACACTTCTTCCTCAAAA  1047

seq1  ATAGGGCT-CTTTGTCATCAG-ATTTTGTACACAGACTCAGAAGGTA  1092
      |||||||| |||||||||||| ||||||||  |||||||||||||||
seq2  ATAGGGCTCCTTTGTCATCAGAATTTTGTAACCAGACTCAGAAGGTA  1094