BAC Information

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BAC

Clone NameB6Ng01-188C11
Chromosome13 (Build37)
Map Location 22,166,908 - 22,168,061
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj
Downstream geneLOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C11.bB6Ng01-188C11.g
ACCGA012535GA012536
length1,1641,185
definitionB6Ng01-188C11.b B6Ng01-188C11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccctttacccacttaggatctttccactttcccccttagata
gctttcaaaggaaactttttacaatttggtaataaactctataatcactt
ctctaagtgtcttctcttcctgagacttccaactcgcatgctgaaagata
gagcccagtagttcctgctgagatagaacaaaggctgcattgcttaatcc
tcccctgttaggctgcagatgttaatcgcctaaaccagcagtcttttact
ctcagaaagaacaaaaaagtttttaggaccttttagaagttatcatcaac
atttcagtataattagagagctaggaagctccaagaccctcagactttaa
agccatcactagagtcctactctgtcactccaccactaccctggcccagg
ctgggagtctccctgcatttgaccttgaaagaaatctgtagagggctgac
ttgtgggagagaaggatgtgggctcctgtcactctgagcagggacagtgg
caggattcagggagaagatggtctatcatttcctaagtgcaatccagaat
tgtctcagtgtccacaaggacagtgtgtgtggtcactgtgcgtgatctgc
tccttacacaggacaagcaggggtaggagacagaggcacctgccgtgcag
cctggagtaggaagctcttgctccgactgcttctcttagctgtataactt
ctggcgacttcagtcttctgtgcatggagcactctttctttctttatggt
gatttcatttattgtaatttctccttttctagatcaaatgtaaaccatgg
aatatgagaattgcagataaaacagacatgaggctaaatactgatagtaa
catctgattttagaaaatggatttttagtgcgaagtaagaacttcacaag
gtactactattcctgtcagttcattgactccctaaattatacctgtatta
cataaaagcatactttacatgtgaaaagtacttttaaaggaagccaaata
agtatgctcaaggtgatgaacatatgaattggaaaagccagaatttaagt
cttaccattgggtggtcaccaaagatgttcttgtgaatactggagccttt
ctattttcctaaaccttggcaatcccacacgtccattgggattcccctca
tttacctggtgaac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccca
atgaaggagctagagaaagtaccaaagagctaaagggatctgcaacccta
taggtggaacacattatgaactaaccagtacccggagcttcttgactcta
gctgcataatgcatcaaagatgctagtcgccatcactggtaaaggagagt
ccaatgaaccgcaaactttattatgccctagttccgggacgccaggccat
aaaggacttgctgtggtatagcgaagaagctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22166908_22168061
seq2: B6Ng01-188C11.b_49_1212

seq1  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTTACCCACTTAGGATCTTTCCACTTTCCCCCTTAGATA  50

seq1  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGGAAACTTTTTACAATTTGGTAATAAACTCTATAATCACTT  100

seq1  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTGTCTTCTCTTCCTGAGACTTCCAACTCGCATGCTGAAAGATA  150

seq1  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGTAGTTCCTGCTGAGATAGAACAAAGGCTGCATTGCTTAATCC  200

seq1  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTAGGCTGCAGATGTTAATCGCCTAAACCAGCAGTCTTTTACT  250

seq1  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGAACAAAAAAGTTTTTAGGACCTTTTAGAAGTTATCATCAAC  300

seq1  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTATAATTAGAGAGCTAGGAAGCTCCAAGACCCTCAGACTTTAA  350

seq1  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACTAGAGTCCTACTCTGTCACTCCACCACTACCCTGGCCCAGG  400

seq1  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTCTCCCTGCATTTGACCTTGAAAGAAATCTGTAGAGGGCTGAC  450

seq1  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGAGAAGGATGTGGGCTCCTGTCACTCTGAGCAGGGACAGTGG  500

seq1  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCAGGGAGAAGATGGTCTATCATTTCCTAAGTGCAATCCAGAAT  550

seq1  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTGTCCACAAGGACAGTGTGTGTGGTCACTGTGCGTGATCTGC  600

seq1  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACACAGGACAAGCAGGGGTAGGAGACAGAGGCACCTGCCGTGCAG  650

seq1  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTATAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTAGGAAGCTCTTGCTCCGACTGCTTCTCTTAGCTGTATAACTT  700

seq1  CTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGACTTCAGTCTTCTGTGCATGGAGCACTCTTTCTTTCTTTATGGT  750

seq1  GATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTTATTGTAATTTCTCCTTTTCTAGATCAAATGTAAACCATGG  800

seq1  AATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGAATTGCAGATAAAACAGACATGAGGCTAAATACTGATAGTAA  850

seq1  CATCTGATTTTAGAAAATGGATTTTTAGTGCGAAGTAGGAACTTCACAAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATCTGATTTTAGAAAATGGATTTTTAGTGCGAAGTAAGAACTTCACAAG  900

seq1  GTACTACTATTCCTGTCAGTTCATTGACTCCCTAAATTATACCTGTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTATTCCTGTCAGTTCATTGACTCCCTAAATTATACCTGTATTA  950

seq1  CATAAAAGCATACTTTACATGTGAAAAGTACTTTTTAAAGAAGCCAAATA  1000
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  CATAAAAGCATACTTTACATGTGAAAAGTACTTTTAAAGGAAGCCAAATA  1000

seq1  AGTATGCTCAAGGTGATGAACATATGAATTGG-AAAGCCAGAATTTAAGT  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTATGCTCAAGGTGATGAACATATGAATTGGAAAAGCCAGAATTTAAGT  1050

seq1  CT--ACATTGGGTGGTCACAAAGGATGTTCTTGTGAATACT-GAG-CTTT  1095
      ||   |||||||||||||| || |||||||||||||||||| ||| ||||
seq2  CTTACCATTGGGTGGTCACCAAAGATGTTCTTGTGAATACTGGAGCCTTT  1100

seq1  CTA-TTTCTAAAACTTTGGCA--TCCACACGT-CATTTGAAT--CCCTCA  1139
      ||| ||||  |||| ||||||   |||||||| |||| | ||  ||||||
seq2  CTATTTTCCTAAACCTTGGCAATCCCACACGTCCATTGGGATTCCCCTCA  1150

seq1  TTTAACTGGTTGAAC  1154
      |||| |||| |||||
seq2  TTTACCTGG-TGAAC  1164